These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1177 fasta sequence [TCGAGCCAANAATTCGGCACGAGGTATAAATTGATAAATTGGGATTAGTACATTGAATGAATAGGAATGATAAGTCATCAAACTGGACCAAGTATTACATTTCCTGATCGTATTAGCGCTGAAAATGATGCAGAACAATTACATAATGCTTGTAAAGGATTATCTACTGATGAGGAAACAATCACTAAAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAATCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATGAGTTGAAGTTATATCGAAAAAATTCTCAGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGNTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAACCATTTATTGAAGCTGTACGAGAAGAACATCAGGAGATTTTCGCAGTTACTTTTGCATTATTGGAGATACTCTTTTTGGGATGATATAAAAATGTCTCTGGTATCATTGTAATGACAACTATTTCACTCACATGAGCTCATTTATTTATATCTATATATAAG] [+] EMBL CD082605 [TCGAGCCAANAATTCGGCACGAGGTATAAATTGATAAATTGGGATTAGTACATTGAATGAATAGGAATGATAAGTCATCAAACTGGACCAAGTATTACATTTCCTGATCGTATTAGCGCTGAAAATGATGCAGAACAATTACATAATGCTTGTAAAGGATTATCTACTGATGAGGAAACAATCACTAAAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAATCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAA ] [-] EMBL CD190363 [ ACATTGAATGAATAGGAATGATAAGTCATCAAACTGGACCAAGTANTACATTTCCTGATCGTATAAGCGCTGAAAATGATGCAGAACAATTACATAATGC TGTAAAGGATTATCTACTGATGAGGAAACAATCACT AAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAGGACGTGATGAAGATCCACCAG ] [+] EMBL CD185310 [ aAAACAATCACTAAAATTTTAGGACACAGAAATCTACAACAACGCTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGACTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAG ] [-] EMBL CD185123 [ AAACAATCACTAAAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTTCATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATT ] [+] EMBL CD080059 [ GTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAAGCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATGAGTTGAAGTTATATCGAAAAAATTCTCAGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGNTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAACCATTTATTGAAGCTGTACGAGAAGAACATCAGGAGATTTTCGCAGTTACTTTTGCATTATTGGAGATACTCTTTTTGGGATGATATAAAAATGTCTCTGGTATCATTGTAATGACAACTATTTCACTCACATGAGCTCATTTATTTATATCTATATATAAG] consensusID : consensus_9824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1001 fasta sequence [TCGGCTCGAGGACAAGAGAGACATTTCATAGACGATATAAAAAGGTTTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAAGCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA-TTCTC--AGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAAACCATTAATTGAAGCTGTACGAGAAGATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTATTGGGAGAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTCTGGGTTATCATTGGTAAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATTATTATAATGAATTACTT] [+] EMBL CD081422 [TCGGCTCGAGGACAAGAGAGACATTTCATAGACGATATAAAAAGGTTTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTATGAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATATAAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAAATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCTTCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTATTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAAGCTATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAAGATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA TTCTC AGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATNTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGA ] [-] EMBL CD076199 [ TTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA TTCTC AGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAAACCATTAATTGAAGCTGTACGAGAAGATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTATTGGGAGAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTCTGGGTTATCATTGGTAAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATTATTATAATGAATTAC ] [-] EMBL CD077054 [ TTTTAATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA TTTTC AGAACCATTTAGATCAGGGTTAAATACAATAATTATGGCATTGATGGATTTACGTCTGTTATTAATTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTTATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATAATTTGGTAAACCATTAATTGAAGCTGTACGAGAAAATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTATTGGGAAAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTTTGGGTTATCATTGGTAAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATTATTATAAGGGATTAC ] [-] EMBL CD075248 [ AAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATAATACAATAGTTGAAGTTATATCGAAAAAA TTCTC AGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAAACCATTAATTGAAGCTGTACGAGAAGATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTATTGGGAGAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTCTGGGTTATCATTGGTAAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATTATTATAATGAATTACTT] [+] EMBL AI168876 [ GTTATATCGAAAAAATTTCACGTAGAACCATTTAGATCAGGGTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAG TTGTCAATTGTATGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACGATGTGAGGTTGATATGAATACATTGAAATC ATGTATCGTGAATATTTTGGT AACCATTAATTG AGCTGTACGAG AGATAC TC GG GGTTTTCGC AGTTAC TTTGG ATTATTGGGAG ATAACTC TTTTGGGGTATGAATAAAAAAtg ] consensusID : consensus_9824#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [GCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATATACATAGTTGAAGTTATATCGAAAAAATCTCAGACCATTTAGATCAGGGTTAATACATGATATGCATGATGATTACGCGTGTAATAGTTGT] [+] EMBL SMAA69094 [GCAGGTAAAGGTGATTCTGATACATTCATAAAAATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAATACCATATACATAGTTGAAGTTATATCGAAAAAATCTCAGACCATTTAGATCAGGGTTAATACATGATATGCATGATGATTACGCGTGTAATAGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9824#1 ------------------------------------------------------------ consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 TCGAGCCAANAATTCGGCACGAGGTATAAATTGATAAATTGGGATTAGTACATTGAATGA 60 consensus_9824#1 ------------------------------------------------------------ consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 ATAGGAATGATAAGTCATCAAACTGGACCAAGTATTACATTTCCTGATCGTATTAGCGCT 120 consensus_9824#1 ------------------------------------------------------------ consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 GAAAATGATGCAGAACAATTACATAATGCTTGTAAAGGATTATCTACTGATGAGGAAACA 180 consensus_9824#1 ----------------------------------TCGGCTCGAGGACAAGAGAGACATTT 26 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 ATCACTAAAATTTTAGGACACAGAAATCTACAACAACGTTATCAAATAAGAGAGACATTT 240 consensus_9824#1 CATAGACGATATAAAAAGGTTTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTAT 86 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 CATAGACGATATAAAAAGGATTTAGTTCATGTATTATGTAGTTCAACAAAAGGTGATTAT 300 consensus_9824#1 GAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATAT 146 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 GAAAGTCTTATCAAAACTTTATTTCGTGGAAGCATACAAATATTAGCTCATGATTTATAT 360 consensus_9824#1 AAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAA 206 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 AAAGGATTAAAGAAACCAGATATTGTTAATGAGATTATATGTTGTTGTAATAATCATGAA 420 consensus_9824#1 ATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCT 266 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 ATTATGATGTTGAAAAAAGCATATCAAGAAGTGCTTCAAGAAGAAGAGCCAAAAAAAGCT 480 consensus_9824#1 TCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTA 326 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 TCACAGCGTACACTTGAAAGTGATATAATCAAAGAAACAAAACCTCCATATGAACAATTA 540 consensus_9824#1 TTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAAGCT 386 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 TTAGTAGCATTATTACAAGCAAGACGTGATGAAGATCCACCAGAATTAGTAGAAGAATCT 600 consensus_9824#1 ATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAA 446 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 ATAAGAACTAGAAGTACATCAAGATTAGTTAGTCGAAGTCAAGTTGATAAAGATGTTGAA 660 consensus_9824#1 GATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAA 506 consensus_9824#2 ---------------------------GCAGGTAAAGGTGATTCTGATACATTCATAAAA 33 consensus_9824#0 GATTTATATTATGCTGGAGAAAAACGTGCAGGTAAAGGTGATTCTGATACATTCATAAAA 720 ********************************* consensus_9824#1 ATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAA 566 consensus_9824#2 ATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAA 93 consensus_9824#0 ATTTTAACAAAACGAAGTAAATATCATGTAAAAGAAATATGGGATCTATATTTAGCGAAA 780 ************************************************************ consensus_9824#1 TACCATAATACAAT-AGTTGAAGTTATATCGAAAAAATTCTCAGAACCATTTAGATCAGG 625 consensus_9824#2 TACCATA-TACA-T-AGTTGAAGTTATATCGAAAAAAT-CTCAGA-CCATTTAGATCAGG 148 consensus_9824#0 TACCATAATACAATGAGTTGAAGTTATATCGAAAAAATTCTCAGAACCATTTAGATCAGG 840 ******* **** * *********************** ****** ************** consensus_9824#1 GTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTA 685 consensus_9824#2 GTTAA-TACA-TGAT-ATG-CAT-GATGATTACGCGTGTAATAGTTGT------------ 191 consensus_9824#0 GTTAAATACAATGATTATGGCATTGATGGATTTACGTCTGTTATTAGTTTGTCAATTGTA 900 ***** **** **** *** *** **** * *** * ** * ** consensus_9824#1 TGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACG 745 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 TGATAGTATGTATGGACTTGGAACACGAGAGGATACATTGATACGAATCACATGTTTACG 960 consensus_9824#1 ATGT-GAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAAACCAT 804 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 ATGNTGAGGTTGATATGAATACATTGAAATCAATGTATCGTGAATATTTTGGTAA-CCAT 1019 consensus_9824#1 TAATTGAAGCTGTACGAGAAGATACATCAGGAGATTTTCGCAAGTTACTTTTGGCATTAT 864 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 TTATTGAAGCTGTACGAGAAGA-ACATCAGGAGATTTTCGCA-GTTACTTTTG-CATTAT 1076 consensus_9824#1 TGGGAGAATAACTCTTTTTGGGGTATGAATATAAAAAAATGTCTCTGGGTTATCATTGGT 924 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 TGGAGATA---CTCTTTTTGGGATG-----ATATAAAAATGTCTCTGG--TATCATTG-- 1124 consensus_9824#1 AAATGACAAACTATTTTCCACTTCAACAATGAAGCTTCATTTTTATTTTATATCCTTATT 984 consensus_9824#2 ------------------------------------------------------------ consensus_9824#0 TAATGACAA-CTATTT--CACTC--ACA-TGAG--CTCATTT---ATTTATATCTATAT- 1172 consensus_9824#1 ATTATAATGAATTACTT 1001 consensus_9824#2 ----------------- consensus_9824#0 ATAAG------------ 1177 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||