These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 886 fasta sequence [CGGTTTTACTCTTGTGATTTGTTGCATGACTTTCTGACTGTGACTATCATATTCCGGTTATAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATAGTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATACTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATCCACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT-GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA-GCAACCCAA-GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCAC-AGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGA-TAGATCGTATACTCAATATGTATTGGATATTTTCTTGCCTTCTTTCACTNTNNGTCTTNCTTTTAGNTNTCTGTTNGATTCAACTNTACTAAAATGGGNTGAC-AGCTTTTTAATGTCCCTTTATACAAAACCAAATCTACCTATTCCTTNNTGTNNCACT-AGAATTNANTNNNGT-ACAT-AACATTNTAGNTCACTTTAATGGTACCTTGAANCAGNNTG-ATAANACCATATTTATTACA] [+] EMBL CD079035 [CGGTTTTACTCTTGTGATTTGTTGCATGACTTTCTGACTGTGACTATCATATTCCGGTTATAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATAGTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATACTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATCCACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAAC CATAAATTTCCCAC AGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTT ] [+] EMBL CD081926 [ CATGACTTTCTGACTGTGACTATCATATTCCGGTTATAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATAGTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATACTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATCCACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCAC AGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGA TAGATCGTATACTCAATATGTATTGGATATTTTCTTGCCTTCTTTCACTNTNNGTCTTNCTTTTAGNTNTCTGTTNGATTCAACTNTACTAAAATGGGNTGAC AGCTTTTTAATGTCCCTTTATACAAAACCAAATCTACCTATTCCTTNNTGTNNCACT AGAATTNANTNNNGT ACAT AACATTNTAGNTCACTTTAATGGTACCTTGAANCAGNNTG ATAANAC ] [+] EMBL CD078039 [ TTTCTGACTGTGACTATCATATTCCGGTTATAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATAGTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATACTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGC ] [+] EMBL BF936441 [ GGACTCAACTTGACCACATTCAATCTACAATTCCGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATCCACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCACAAGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGATTAGATCGTATACTCAATATGTATTGTATATTTTCTTGCCTTCTTTCACTTTTGTTCTTTCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAAT GGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACCAAATCTACCTATTCCTT TTGT CCACTAAGAATTAATT GTAACATAAACATTTTAGTTCACTTTAATGTTACCTTGAAACAG TTGAATAAAAACATATTTATTACA] [+] EMBL SMRAP029 [ GATCCACGGCTTGCCCGTTTAAT AGTCTAGCTGGTCAAACATTTCTGACTGATATCCTTTCTGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTHCTACAACACCAGCAAGGCAACCCAAGGTCAGTCTATTTCACAGgtc ] [+] EMBL SMRAP037 [ GATCCACGGYTTGCCCGTTT ATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTGACGGTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACTGGGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA G GACCCAA GTCAGTCTTTTtcc ] [+] EMBL CD145808 [ TCTGACTGATATCCTTTCCGACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCAC AGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGA TAGATCGTATACTCAATATGTAT ] [+] EMBL CD120732 [ CAGCCTACT GGGTTGCTTAACCATTCTAGTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAACACCAGCAA GCAACCCAA GTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTGGAACAAATAAATTTCCCA ] consensusID : consensus_9827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence [GCATNTAATCCGTCTTATATGAATGGTAGTACAACACCAGCAAGCAACCCAAGTCAGTTTATTCCACAGTCTCCATCATTTAGTGGAAAACCTGGAACAAATAAATTTCCCACAGATTGTCGCGCCACTTTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGATAGATCGTATACTCAATATGTATTGTATATTTTCTTGCCTTCTTTCACTTTTGTTCTTTCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACCAAATCTACCTATTCCTTTTGTCCACTAAGAATTAATTGTAACATAAACATTTTAGTTCACTTTAATGTTACCTTGAAACAGTTGAATAAAAACATATTTATTACAACTAGTGAAAAAAAAAAAAAAAAAAA] [-] EMBL CD073487 [GCATNTAATCCGTCTTATATGAATGGTAGTACAACACCAGCAAGCAACCCAAGTCAGTTTATTCCACAGTCTCCATCATTTAGTGGAAAACCTGGAACAAATAAATTTCCCACAGATTGTCGCGCCACTTTTACACTGGAAGATTTAATTGCTTCATTGAATGATAGGGGTATTCATGTTGCCAAACCCCCTTATTATCGATAGATCGTATACTCAATATGTATTGTATATTTTCTTGCCTTCTTTCACTTTTGTTCTTTCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACCAAATCTACCTATTCCTTTTGTCCACTAAGAATTAATTGTAACATAAACATTTTAGTTCACTTTAATGTTACCTTGAAACAGTTGAATAAAAACATATTTATTA ] [-] EMBL AI395045 [ gGGAAGA TTAATTGCTTCATTGATTGTTAGGGTTA TCATGTT CCAAACCCCCTT TTATCGATAGATCGTATACTCAATATGTATTGTATATTTTCTTGCCTTCTTTCACTTTTGTTCTTTCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACCAAATCTACCTATTCCTTTTGTCCACTAAGAATTAATTGTAACATAAACATTTTAGTTCACTTTAATGTTACCTTGAAACAGTTGAATAAAAACATATTTATTACAACTAGTGAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9827#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [CATTGAAWGGATAGGGGTATTCATGTTGCCAAACCCCCCTTATTACCGATAGYSGTATACVCAATATGTATTGTATATTGTCTTGCCTSTCTTTCACTTTTGTRCTRCCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACGAAATC] [-] EMBL SMRAP035 [CATTGAAWGGATAGGGGTATTCATGTTGCCAAACCCCCCTTATTACCGATAGYSGTATACVCAATATGTATTGTATATTGTCTTGCCTSTCTTTCACTTTTGTRCTRCCTTTTAGTTTTCTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAACGAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9827#1 ------------------------------------------------------------ consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 CGGTTTTACTCTTGTGATTTGTTGCATGACTTTCTGACTGTGACTATCATATTCCGGTTA 60 consensus_9827#1 ------------------------------------------------------------ consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 TAATCTTAATGATTATTGGAACTGTGACTCCAAAAACTTCTATAACATCTGTTGTGGATA 120 consensus_9827#1 ------------------------------------------------------------ consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 GTTGTCAGACAACTAGCGTAACGACATCGTCGGTTCCTGTATCTTCATCTTCTGAGAATA 180 consensus_9827#1 ------------------------------------------------------------ consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 CTAGCGGTGTGCTTCTTAGCAATTTATGGACTCAACTTGACCACATTCAATCTACAATTC 240 consensus_9827#1 ------------------------------------------------------------ consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 CGGACAGATTATCAATTGCTATGTTAGAGAGTGCTGGTGTGCAAATGGAGAACAGCGATC 300 consensus_9827#1 ------------------------------------------------------------ consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 CACGGCTTGCCCGTTTAATCAGTCTAGCTGGTCAAAAATTTCTGACTGATATCCTTTCTG 360 consensus_9827#1 ------------------------------------------------------------ consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 ACGCTATGCTTCATTGGCGCCTTGCAAATGGACAGCCTACTGGGTTGCTTAACCATTCTA 420 consensus_9827#1 --------------------------GCATNTAATCCGTCTTATATGAATGGTAGTACAA 34 consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 GTGTGTCTACATCTATACCAGGTCAAGCATCTAATCCGTCTTATATGAATGCTACTACAA 480 consensus_9827#1 CACCAGCAAGCAACCCAAGTCAGTTTATTCCACAGTCTCCATCATTTAGTGGAAAACCTG 94 consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 CACCAGCAAGCAACCCAAGTCAGTCTATTCCACAGTCTCCATCATCTAGTGGAAAACCTG 540 consensus_9827#1 GAACAAATAAATTTCCCACAGATTGTCGCGCCACTTTTACACTGGAAGATTTAATTGCTT 154 consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 GAACAAATAAATTTCCCACAGATCGTCGCGCCACTCTTACACTGGAAGATTTAATTGCTT 600 consensus_9827#1 CATTGAATG-ATAGGGGTATTCATGTTGCCAAACCCCC-TTATTATCGATAGATCGTATA 212 consensus_9827#2 CATTGAAWGGATAGGGGTATTCATGTTGCCAAACCCCCCTTATTACCGATAG-YSGTATA 59 consensus_9827#0 CATTGAATG-ATAGGGGTATTCATGTTGCCAAACCCCC-TTATTATCGATAGATCGTATA 658 ******* * **************************** ****** ****** ***** consensus_9827#1 CTCAATATGTATTGTATATTTTCTTGCCT-TCTTTCACTTTTGTTCTTTCTTTTAGTTTT 271 consensus_9827#2 CVCAATATGTATTGTATATTGTCTTGCCTSTCTTTCACTTTTGTRCTRCCTTTTAGTTTT 119 consensus_9827#0 CTCAATATGTATTGGATATTTTCTTGCCT-TCTTTCACTNTNNGTCTTNCTTTTAGNTNT 717 * ************ ***** ******** ********* * ** ******* * * consensus_9827#1 CTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAA 331 consensus_9827#2 CTGTTTGATTCAACTTTACTAAAATGGTTGACAAGCTTTTTAATGTCCTTTAATACAAAA 179 consensus_9827#0 CTGTTNGATTCAACTNTACTAAAATGGGNTGACAGCTTTTTAATGTCCCTTTATACAAAA 777 ***** ********* *********** *************** ** ******** consensus_9827#1 CCAAATCTACCTATTCCTTTT-GTCCACTAAGAATTAATTGTAACATA-AACATTTTAGT 389 consensus_9827#2 CGAAATC----------------------------------------------------- 186 consensus_9827#0 CCAAATCTACCTATTCCTTNNTGTNNCACTAGAATTNANTNNNGTACATAACATTNTAGN 837 * ***** consensus_9827#1 TCACTTTAATGTTACCTTGAAACAGTTGAATAAAAACATATTTATTACAACTAGTGAAAA 449 consensus_9827#2 ------------------------------------------------------------ consensus_9827#0 TCACTTTAATGGTACCTTGAANCAGNNTGATAANACCATATTTATTACA----------- 886 consensus_9827#1 AAAAAAAAAAAAAAA 464 consensus_9827#2 --------------- consensus_9827#0 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||