These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 521 fasta sequence [TCGAAATCTTCTGTTAAACGTTGAAGCATTGATAAAGGTTCACTGAAATTGACGGGCATAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTT----TCGG-AGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCATTCGATTTGTTACCTACCTATTGCTCTAT] [-] EMBL CD063202 [TCGAAATCTTCTGTTAAACGTTGAAGCATTGATAAAGGTTCACTGAAATTGACGGGCATAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTT TCGG AGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGGTCACGACT ] [+] EMBL CD181334 [ GAAATCTTCTGTTAAACGTTGAAGCATTGATAAAGGTTCACTGAAATTGACGGGCATAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTT TCGG AGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTT ] [+] EMBL CD187209 [ TTGACGGGCATAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTT TCGG AGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCATTCGATTTGTTA ] [+] EMBL CD127576 [ tgtgcaaATAGTAGGTTGAAATAGGTATGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCAT ] [-] EMBL CD127961 [ TAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGCGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTAACATTCGATTTGTTACCTACCTATTGCTCTAT] [+] EMBL CD127644 [ tGTTTTTTAATCACTTTCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCAT ] [-] EMBL CD127613 [ CACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATATTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAAGCCCGTTTGATTATCATT ] consensusID : consensus_9835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 354 fasta sequence [TCTTGCACAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTCTGTGCAAAA] [+] EMBL CD114615 [TCTTGCACAGGGATTTTTGTCAACTCTTTTCCAATGCAATTTTTCATGATGCTCCATAAATTCAGACTTATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCACATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTATGTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACCAGGCCGACTGCCACACTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTGTGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTCTGTGCAAAA] [+] EMBL CD114307 [ GAATGATCACGACTGTTACATTCCTCAGTTGTGGGTATGTCTTGTGTCATTTGACCGTGCCCACATGGAACTATAGTACCAGGCCGACTGCCTCACTGCCTACTACGAGGTTGTTTAACA ] consensusID : consensus_9835#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 345 fasta sequence [GACGAATATGCTGATCAGAATTCACAATCGAATCAATTTGGAAAGCTACGTGAAGCACGTGTTATACAACCTCGTAGTAGGCAGTGTGGCAGGTAACATGAAAATCTATTCTTTCATTGATTATATGACAGTTGTTTTAGATTAGAGAGTGTCCGAAAACTAAGCATGTCCATTGTATAGCCTTCATAGGATCTTATTAATTCTTCGTTATTTTGACAGAATATTTTCTTCTCTGTAGATTTATTCATGTATTTAGTGAGGTGTTACCAATTTGTCTTATTGCAACCCAGCTATTCCTCTTGCTTAGTGTTCTTGGACACCAATTCACTTGACAAGTCCCCAAAT] [+] EMBL CD181491 [GACGAATATGCTGATCAGAATTCACAATCGAATCAATTTGGAAAGCTACGTGAAGCACGTGTTATACAACCTCGTAGTAGGCAGTGTGGCAGGTAACATGAAAATCTATTCTTTCATTGATTATATGACAGTTGTTTTAGATTAGAGAGTGTCCGAAAACTAAGCATGTCCATTGTATAGCCTTCATAGGATCTTATTAATTCTTCGTTATTTTGACAGAATATTTTCTTCTCTGTAGATTTATTCATGTATTTAGTGAGGTGTTACCAATTTGTCTTATTGCA ] [+] EMBL CD059489 [ CGTAGTAGGCAGTGTGGCAGGTAACATGAAAATCTATTCTTTCATTGATTATATGACAGTTGTTTTAGATTAGAGAGTGTCCGAAAACTAAGCATGTCCATTGTATAGCCTTCATAGGATCTTATTAATTCTTCGTTATTTTGACAGAATATTTTCTTCTCTGTAGATTTATTCATGTATTTAGTGAGGTGTTACAAATTTGTCTTATTGCAACCCAGCTATTCCTCTTGCTTAGTGTTCTTGGACACCAATTCACTTGACAAGTCCCCAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9835#0 TCGAAATCTTCTGTTAAACGTTGAAGCATTGATAAAGGTTCACTGAAATTGACGGGCATA 60 consensus_9835#1 ---------------------------------------------------TCTTGCACA 9 consensus_9835#2 --------------------------------------------------------GACG 4 * consensus_9835#0 GGGATTTTTGTCAACTCTTTTCCAATGCAATTT-TTCATGATGCTCCATAAATTCAGACT 119 consensus_9835#1 GGGATTTTTGTCAACTCTTTTCCAATGCAATTT-TTCATGATGCTCCATAAATTCAGACT 68 consensus_9835#2 AATATGCTGATCAGA--ATTCACAATCGAATCAATTTGGAAAGCTACGTGAAGCACGTGT 62 ** * *** ** **** *** ** * *** * * ** * * consensus_9835#0 TATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCAC 179 consensus_9835#1 TATATTAGGTTTCGGAGGTATAGAAAGTCTTCTGACAATAGGTAGACGTTTTTTAATCAC 128 consensus_9835#2 TATACAA--CCTCGTAG---TAGGCAGTGT----------GGCAGGTAACATGAAAATCT 107 **** * *** ** *** *** * ** ** * ** consensus_9835#0 ATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTAT 239 consensus_9835#1 ATCCGGTTCTGAATCAGCTTGGGAATGATCACGACTGTTAGATTCCTCAGTTGTAGGTAT 188 consensus_9835#2 ATTCTTTCATTGATTATATGACAGTTGTTTTAGATTAGAGAGTGTCCGAAAACTAAGCAT 167 ** * * * ** * * ** * ** * * * * ** * ** consensus_9835#0 GTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACC---AGGCCGACTGCCACA 296 consensus_9835#1 GTCTTGTGTCATTTGACCGTCACCAGATGGAACTAAAGTACC---AGGCCGACTGCCACA 245 consensus_9835#2 GTCC---ATTGTATAGCCTTCATAGGATCTTATTAATTCTTCGTTATTTTGACAGA-ATA 223 *** * * * ** *** *** * *** * * *** * * * consensus_9835#0 CTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTG 356 consensus_9835#1 CTGCCTACTACGAGGTTGTATAACACGTGCTTCACGTAGCTTTCCAAATTGATTCGATTG 305 consensus_9835#2 TTTTCTTCTCTGTAGATTTATT-CATGTATTTAGTGAGGTGTTACCAATTTGTCTTATTG 282 * ** ** * * * *** ** ** ** * * ** * **** * **** consensus_9835#0 TGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTGAAACCCACATCAGATTCATA 416 consensus_9835#1 TGAATTCTGATCAGCATATTCATCTGCTTCATCGTCAGTCTGTGCAAAA----------- 354 consensus_9835#2 CAA------CCCAGC-TATTCCTCTTGCTTAGTGTTCTTGGACACCAATTCACTTGACAA 335 * **** ***** *** * * ** * * * consensus_9835#0 TTCGTCAGCAATATCAGAACCAGCAGGTATTACAGAGTCTTCATCTTGAGAATTGCTTAA 476 consensus_9835#1 ------------------------------------------------------------ consensus_9835#2 GTCCCCAAAT-------------------------------------------------- 345 consensus_9835#0 GCCCGTTTGATTATCATTCGATTTGTTACCTACCTATTGCTCTAT 521 consensus_9835#1 --------------------------------------------- consensus_9835#2 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||