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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1142 fasta sequence
[AAAATTTATTGACAAAAAGAATAGGAGTGAATCAGTTTGAATAGCTCTATATACATATACACGAAAACAGAACTGAAAATATACATTAAAGACAAACACAGAAAACACTACCACTAAGCACAATCGGTAATTGAAAGTGTATTAAGTAAATATATAACTATCCACTTCTCCCATCAAATACAAAACGAAATGAAACTGAACAACATATGGAGAGAAAAACTGATATACACACAAATATTTATAACTGTTTAATTGCCTCTTCTATCGCATCATGCAAGTCTGGTACATTCTCATTGATAACCCAACTGGGTAAAGGTGCAGAATAGCACCAATCAGATCCACTATAACGATAAGCATGTAGTCGCAGTATTAAGTTATTCATTTCTGGATCTTTGAAAGTCAATTTACAATCAGGGCATAAGGGATCTTTACACAATTGCAGACGTTCTAATACATTTGGATCAAGAGAGCTTTTCAACTTTTCATTGGTCTCTTGGATTATATACTTTTCCCTGTTACGAGAATTACTCAGTCTTTGGATAACTTCTTCTATAGTTATTCCATAATTAGCGCCTTTCCCTTTCAACTCACCCCAATCAGCTGAATTGTATAGAGGATCATCAACTATTGGATAACCTAAGTACTGCACATGTATTCGGATTTGATGTGTACGCCCAGTGAATAGACGACATATGACTAGACTTGTATCCGTGACGGGATTGTAGCTTAAGCGCAAGAAATGTGTCCGCGCAAACTTCCCACCAGCTGATTCTGGTAAAACGCCATGTACACCCATTCTACGACTGATAGGCCCGACAGGTTGGCTACAAACCACTACTCCATTGTTTATTTCAAAGCCAGTACATTGATCGATTGGTTCGGTTGGGAAACAGCCTTCGACATGACATATATAATATTTTGCAACCTCCTTACTACTAATTTGTGATTGCAGGCGTACAGATGTATCGTAGTTCTTGGCGATTAGCAGTAATCCAGAAGTCATTTTAGTACAGGACACTCATGACGATGGACCTTCTGAGAAAGGAGATCACTATCATTTATGATATAGTCAGGGTCAACTTTTGCATTATTCACTAGGATTTCACCTGATTCACATTTCTGTGCGATTGCTCGGCACGAGG]
[+] EMBL CD073312 [AAAATTTATTGACAAAAAGAATAGGAGTGAATCAGTTTGAATAGCTCTATATACATATACACGAAAACAGAACTGAAAATATACATTAAAGACAAACACAGAAAACACTACCACTAAGCACAATCGGTAATTGAAAGTGTATTAAGTAAATATATAACTATCCACTTCTCCCATCAAATACAAAACGAAATGAAACTGAACAACATATGGAGAGAAAAACTGATATACACACAAATATTTATAACTGTTTAATTGCCTCTTCTATCGCATCATGCAAGTCTGGTACATTCTCATTGATAACCCAACTGGGTAAAGGTGCAGAATAGCACCAATCAGATCCACTATAACGATAAGCATGTAGTCGCAGTATTAAGTTATTCATTTCTGGATCTTTGAAAGTCAATTTACAATCAGGGCATAAGGGATCTTTACACAATTGCAGACGTTCTAATACATTTGGATCAAGAGAGCTTTTCAACTTTTCATTGGTCTCTTGGATTATATACTTTTCCCTGTTACGAGAATTACTCAGTCTTTGGATAACTTCTTCTATAGTTATTCCATAATTAGCGCCTTTCCCTTTCAACTCACCCCAATCAGCTGAATTGTATAGAGG ]
[+] EMBL CD073295 [AAAATTTATTGACAAAAAGAATAGGAGTGAATCAGTTTGAATAGCTCTATATACATATACACGAAAACAGAACTGAAAATATACATTAAAGACAAACACAGAAAACACTACCACTAAGCACAATCGGTAATTGAAAGTGTATTAAGTAAATATATAACTATCCACTTCTCCCATCAAATACAAAACGAAATGAAACTGAACAACATATGGAGAGAAAAACTGATATACACACAAATATTTATAACTGTTTAATTGCCTCTTCTATCGCATCATGCAAGTCTGGTACATTCTCATTGATAACCCAACTGGGTAAAGGTGCAGAATAGCACCAATCAGATCCACTATAACGATAAGCATGTAGTCGCAGTATTAAGTTATTCATTTCTGGATCTTTGAAAGTCAATTTACAATCAGGGCATAAGGGATCTTTACACAATTGCAGACGTTCTAATACATTTGGATCAAGAGAGCTTTTCAACTTTTCATTGGTCTCTTGGATTATATACTTTTCCCTGTTACGAGAATTACTCAGTCTTTGGATAACTTCTTCTATAGTTATTCCATAATTAGCGCCTTTCCCTTTCAACTCACCCCAAT ]
[-] EMBL CD190516 [ ATGCAAGTCTGGTACATTCTCATTGATAACCCAACTGGGTAAAGGTGCAGAATAGCACCAATCAGATCCACTATAACGATAAGCATGTAGTCGCAGTATTAAGTTATTCATTTCTGGATCTTTGAAAGTCAATTTACAATCAGGGCATAAGGGATCTTTACACAATTGCAGACGTTCTAATACATTTGGATCAAGAGAGCTTTTCAACTTTTCATTGGTCTCTTGGATTATATACTTTTCCCTGTTACGAGAATTACTCAGTCTTTGGATAACTTCTTCTATAGTTATTCCATAATTAGCGCCTTTCCCTTTCAACTCACCCCAATCAGCTGAATTGTATAGAGGATCATCAACTATTGGATAACCTAAGTACTGCACATGTATTCGGATTTGATG ]
[-] EMBL CD115027 [ CTGGTACATTCTCATTGATAACCCAACTGGGTAAAGGTGCAGAATAGCACCAATCAGATCCACTATAACGATAAGCATGTAGTCGCAGTATTAAGTTATTCATTTCTGGATCTTTGAAAGTCAATTTACAATCAGGGCATAAGGGATCTTTACACAATTGCAGACGTTCTAATACATTTGGATCAAGAGAGCTTTTCAACTTTTCATTGGTCTCTTGGATTATATACTTTTCCCTGTTACGAGAATTACTCAGTCTTTGGATAACTTCTTCTATAGTTATTCCATAATTAGCGCCTTTCCCTTTCAACTCACCCCAATCAGCTGAATTGTATAGAGGATCATCAACTATTGGATAACCTAAGTACTGCACATGTATTCGGATTTGATGTGTACGCCCAGTGAATAGACGACATATGACTAGACTTGTATCCGTGACGGGATTGTAGCTTAAGCGCAAGAAATGTGTCCGCGCAAACTTCCCACCAGCTGATTCTGGTAAAACGCCATGTACACCCATTCTACGACTGATAGGCCCGACAGGTTGGCTACAAACCACTACTCCATTGTTTATTTCAAAGCCAGTACATTGA ]
[-] EMBL CD114966 [ CCACTATAACGATAAGCATGTAGTCGCAGTATTAAGTTATTCATTTCTGGATCTTTGAAAGTCAATTTACAATCAGGGCATAAGGGATCTTTACACAATTGCAGACGTTCTAATACATTTGGATCAAGAGAGCTTTTCAACTTTTCATTGGTCTCTTGGATTATATACTTTTCCCTGTTACGAGAATTACTCAGTCTTTGGATAACTTCTTCTATAGTTATTCCATAATTAGCGCCTTTCCCTTTCAACTCACCCCAATCAGCTGAATTGTATAGAGGATCATCAACTATTGGATAACCTAAGTACTGCACATGTATTCGGATTTGATGTGTACGCCCAGTGAATAGACGACATATGACTAGGCTTGTATCCGTGACGGGATTGTAGCTTAAGCGCAAGAAATGTGTCCGCGCAAACTTCCCACCAGCTGATTCTGGTAAAACGCCATGTACACCCATTCTACGACTGATAGGGCCGACAGGTTGGCTACAAACCACTACTCCATTGTTTATTTCAAAGCCAGTACATTGA ]
[-] EMBL CD078851 [ TTGGATAACTTCTTCTATAGTTATTCCATAATTAGCGCCTTTCCCTTTCAACTCACNNCAATCAGCTGAATTGTATAGAGGATCATCAACTATTGGATAACCTAAGTACTGCACATGTATTCGGATTTGATGTGTACGCCCAGTGAATAGACGACATATGACTAGACTTGTATCCGTGACGGGATTGTAGCTTAAGCGCAAGAAATGTGTCCGCGCAAACTTCCCACCAGCTGATTCTGGTAAAACGCCATGTACACCCATTCTACGACTGATAGGCCCGACAGGTTGGCTACAAACCACTACTCCATTGTTTATTTCAAAGCCAGTACATTGATCGATTGGTTCGGTTGGGAAACAGCCTTCGACATGACATATATAATATTTTGCAACCTCCTTACTACTAATTTGTGATTGCAGGCGTACAGATGTATCGTAGTTCTTGGCGATTAGCAGTAATCCAGAAGTCATTTTAGTACAGGACACTCATGACGATGGACCTTCTGAGAAAGGAGATCACTATCATTTATGATATAGTCAGGGTCAACTTTTGCATTATTCACTAGGATTTCACCTGATTCACATTTCTGTGCGATTGCTCGGCACGAGG]
[-] EMBL CD078835 [ TTTCAACTCACCCCAATCAGNTGAATTGTATAGAGGATCATCAACTATTGGATAACCTAAGTACTGCACATGTATTCGGATATGATGTGTACGCCCAGTGAATAGACGACATATGACTAGACTTGTATCCGTGACGGGATTGTAGCTTAAGCGCAAGAAATGTGTCCGCGCAAACTTCCCACCAGCTGATTCTGGTAAAACGCCATGTACACCCATTCTACGACTGATAGGCCCGACAGGTTGGCTACAAACCACTACTCCATTGTTTATTTCAAAGCCAGTACATTGATCGATTGGTTCGGTTGGGAAACAGCCTTCGACATGACATATATAATATTTTGCAACCTCCTTACTACTAATTTGTGATTGCAGGCGTACAGATGTATCGTAGTTCTTGGCGATTAGCAGTAATCCAGAAGTCATTTTAGTACAGGACACTCATGACGATGGACCTTCTGAGAAAGGAGATCACTATCATTTATGATATAGTCAGGGTCAACTTTTGCATTATTCACTAGGATTTCACCTGATTCACATTTCTGTGCGATTGCTCGGCACGAGG]
consensusID : consensus_9837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 577 fasta sequence
[TTCGACATGACATATATAATATTTTGCAACCTCCTTACTACTAATTTGTGATTGCAGGCGTACAGATGTATCGTAGTTCTTGGCGATTAGCAGTAATCCAGAAGTCATTCTATCAAGGCGGTGGGTAAATCGTAGAGGACGAAGACCATAATCCTTGGCCAATATGTGTGTGATGCTGTTAAGCGTGTACTGGCCACAAGGATGAATAGGTATGGAGGGAGGTTTATTGACCACTAAAATATCGTCTGAATCGTGTACAAACTCAATGGGAAGATTTAGTACAGGACACTCATGACGATGGACCTTCTGAGAAAGGAGATCACTATCATTTATGATATAGTCAGGGTCAACTTTTGCATTATTCACTAGGATTTCACCTGATTCACATTTCTGTGCGATTGCTTCATCAGAATTATTATTAAATTCAGACTGCATGACATCACGAAGCTTACGATTAATCCACCTTTCCTTTGCATAAGCTTTGAAGACGAAATGATAGGGGAAAACCTTTCTAAATATCCCATCAGTGTAGTAGTCACTGATGCTGGAATCCTCATAATGCACAAAGTCAGTCGCT]
[-] EMBL CD161370 [TTCGACATGACATATATAATATTTTGCAACCTCCTTACTACTAATTTGTGATTGCAGGCGTACAGATGTATCGTAGTTCTTGGCGATTAGCAGTAATCCAGAAGTCATTCTATCAAGGCGGTGGGTAAATCGTAGAGGACGAAGACCATAATCCTTGGCCAATATGTGTGTGATGCTGTTAAGCGTGTACTGGCCACAAGGATGAATAGGTATGGAGGGAGGTTTATTGACCACTAAAATATCGTCTGAATCGTGTACAAACTCAATGGGAAGATTTAGTACAGGACACTCATGACGATGGACCTTCTGAGAAAGGAGATCACTATC ]
[-] EMBL CD083699 [ TTGCAACCTCCTTACTACTAATTTGTGATTGCAGGCGTACAGATGTATCGTAGTTCTTGGCGATTAGCAGTAATCCAGAAGTCATTCTATCAAGGCGGTGGGTAAATCGTAGAGGACGAAGACCATAATCCTTGGCCAATATGTGTGTGATGCTGTTAAGCGTGTACTGGCCACAAGGATGAATAGGTATGGAGGGAGGTTTATTGACCACTAAAATATCGTCTGAATCGTGTACAAACTCAATGGGAAGATTTAGTACAGGACACTCATGACGATGGACCTTCTGAGAAAGGAGATCACTATCATTTATGATATAGTCAGGGTCAACTTTTGCATTATTCACTAGGATTTCACCTGATTCACATTTCTGTGCGATTGCTTCATCAGAATTATTATTAAATTCAGACTGCATGACATCACGAAGCTTACGATTAATCCACCTTTCCTTTGCATAAGCTTTGAAGACGAAATGATAGGGGAAAACCTTTCTAAATATCCCATCAGTGTAGTAGTCACTGATGCTGGAATC ]
[-] EMBL CD095855 [ AATCCTTGGCCAATATGTGTGTGATGCTGTTAAGCGTGTACTGGCCACAAGGATGAATAGGTATGGAGGGAGGTTTATTGACCACTAAAATATCGTCTGAAACGTGTACAAACTCAATGGGAAGATTTAGTACAGGACACTCATGACGATGGACCTTCTGAGAAAGGAGATCACTATCATTTATGATATAGTCAGGGTCAACTTTTGCATTATTCACTAGGATTTCACCTGATTCACATTTCTGTGCGATTGCTTCATCAGAATTATTATTAAATTCAGACTGCATGACATCACGAAGCTTACGATTAATCCACCTTTCCTTTGCATAAGCTTTGAAGACGAAATGATAGGGGAAAACCTTTCTAAATATCCCATCAGTGTAGTAGTCACTGATGCTGGAATTCTCATAATGCACAAAGTCAGTCGCT]
consensusID : consensus_9837#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[TTTTTTTTTTTTTTTTTCGGTAATTGAAAGTGTATTAAGTAAATATATAACTATCCACTTCTCCCATCAAATACAAAACGAAATGAAACTGAACAACATATGGAGAGAAAAACTGATATACACACAAATATTTATAACTGTTTAATTGCCTCTTCTATCGCATCATGCAAGTCTGGTACATTCTCATTGATAACCCAACTGGGTAAAGGTGCAGAATAGCACCAATCAGATCCACTATAACGATAAGCATGTAGTCGCAGTATTAAGTTATCAATTCTGGATCTTTGAAAGTCAATTTACAATCAGGGATAAGGATCTTTACACAATGCAGACGTTC]
[+] EMBL AI395687 [TTTTTTTTTTTTTTTTTCGGTAATTGAAAGTGTATTAAGTAAATATATAACTATCCACTTCTCCCATCAAATACAAAACGAAATGAAACTGAACAACATATGGAGAGAAAAACTGATATACACACAAATATTTATAACTGTTTAATTGCCTCTTCTATCGCATCATGCAAGTCTGGTACATTCTCATTGATAACCCAACTGGGTAAAGGTGCAGAATAGCACCAATCAGATCCACTATAACGATAAGCATGTAGTCGCAGTATTAAGTTATCAATTCTGGATCTTTGAAAGTCAATTTACAATCAGGGATAAGGATCTTTACACAATGCAGACGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9837#0 AAAATTTATTGACAAAAAGAATAGGAGTGAATCAGTTTGAATAGCTCTATATACATATAC 60
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 ------------------------------------------------------------
consensus_9837#0 ACGAAAACAGAACTGAAAATATACATTAAAGACAAACACAGAAAACACTACCACTAAGCA 120
consensus_9837#2 -----------------------------------------------TTTTTTTTTTTTT 13
consensus_9837#1 ------------------TTCGACATGACATATATA-ATATTTTGCAACCTCCTTACTAC 41
*
consensus_9837#0 CAATCGGTAATTGAAAGTGTATTAAGTAAATATATAACTATCCACTTCTCCCATCAAATA 180
consensus_9837#2 TTTTCGGTAATTGAAAGTGTATTAAGTAAATATATAACTATCCACTTCTCCCATCAAATA 73
consensus_9837#1 TAATTTGTGATTGCAGGCGTAC-----AGATGTATCGTAGTTC---TTGGCGATTAGCAG 93
* ** **** * * *** * ** *** * * * * ** *
consensus_9837#0 CAAAACGAAATGAAACTGAACAACATATGGAGAGAAAAACTGATATACACACAAATATTT 240
consensus_9837#2 CAAAACGAAATGAAACTGAACAACATATGGAGAGAAAAACTGATATACACACAAATATTT 133
consensus_9837#1 TAATCCAGAAGTCATTCTATCAAGGC---GGTGGGTAAATCGTAGAGGACGAAGACCATA 150
** * ** * * *** * * *** * ** * * *
consensus_9837#0 ATAACTGTTTAATTGCCTCTTCTATCGCATCATGCAAGTCTGGTACATTCTCATTGATAA 300
consensus_9837#2 ATAACTGTTTAATTGCCTCTTCTATCGCATCATGCAAGTCTGGTACATTCTCATTGATAA 193
consensus_9837#1 ATCCTTGGCCAAT-ATGTGTGTGATGCTGTTAAGCGTGTACTGGCCACAAGGATGAATAG 209
** ** *** * * ** * * ** ** * ** ** ***
consensus_9837#0 CCCAACTGGGTAAAGGTGCAGAATAGCACCAATCAGATCCACTATAACGATAAGCATGTA 360
consensus_9837#2 CCCAACTGGGTAAAGGTGCAGAATAGCACCAATCAGATCCACTATAACGATAAGCATGTA 253
consensus_9837#1 GTA---TGGAGGGAGGTTTATTG-ACCACTAAA-ATATCGTCTGAATCG-----TGTACA 259
*** **** * * *** ** * *** ** * ** * *
consensus_9837#0 GTCGCAGTATTAAGTTATTCATTTCTGGATCTTTGAAAGTCAATTTACAATCAGGGCATA 420
consensus_9837#2 GTCGCAGTATTAAGTTAT-CAATTCTGGATCTTTGAAAGTCAATTTACAATCAGGG-ATA 311
consensus_9837#1 AACTCAATGGGAAG--ATTTAGTACAGGACACTC--ATGACGATGGACCTTCTGAG-AAA 314
* ** * *** ** * * * *** * * * * ** ** ** * * * *
consensus_9837#0 AGGGATCTTTACACAATTGCAGACGTTCTAATACATTTGGATCAAGAGAGCTTTTCAACT 480
consensus_9837#2 AGG-ATCTTTACACAAT-GCAGACGTTC-------------------------------- 337
consensus_9837#1 GGAGATCACTATCATTTATGATATAGTCAGGGTCAACT---TTTGCATTATTCACTAGGA 371
* *** ** * * * **
consensus_9837#0 TTTCATTGGTCTCTTGGATTATATACTTTTCCCTGTTACGAGAATTACTCAGTCTTTGGA 540
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 TTTCACCTGATTCACATTTCTGTGCGATTGCTTCATCAGAATTATTATTAAATTCAGACT 431
consensus_9837#0 TAACTTCTTCTATAGTTATTCCATAATTAGCGCCTTTCCCTTTCAACTCACCCCAATCAG 600
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 GCATGACATCACGAAGCTTACGATTAATCCACCTTTCCTTTGCATAAGCTTTGAAGACGA 491
consensus_9837#0 CTGAATTGTATAGAGGATCATCAACTATTGGATAACCTAAGTACTGCACATGTATTCGGA 660
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 AATGATAGGGGAAAACCTTTCTAAATATCCCATCAGTGTAGTAGT-CACTGATGCTGGAA 550
consensus_9837#0 TTTGATGTGTACGCCCAGTGAATAGACGACATATGACTAGACTTGTATCCGTGACGGGAT 720
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 TCCTCATAATGCACAAAGTCAGTCGCT--------------------------------- 577
consensus_9837#0 TGTAGCTTAAGCGCAAGAAATGTGTCCGCGCAAACTTCCCACCAGCTGATTCTGGTAAAA 780
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 ------------------------------------------------------------
consensus_9837#0 CGCCATGTACACCCATTCTACGACTGATAGGCCCGACAGGTTGGCTACAAACCACTACTC 840
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 ------------------------------------------------------------
consensus_9837#0 CATTGTTTATTTCAAAGCCAGTACATTGATCGATTGGTTCGGTTGGGAAACAGCCTTCGA 900
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 ------------------------------------------------------------
consensus_9837#0 CATGACATATATAATATTTTGCAACCTCCTTACTACTAATTTGTGATTGCAGGCGTACAG 960
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 ------------------------------------------------------------
consensus_9837#0 ATGTATCGTAGTTCTTGGCGATTAGCAGTAATCCAGAAGTCATTTTAGTACAGGACACTC 1020
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 ------------------------------------------------------------
consensus_9837#0 ATGACGATGGACCTTCTGAGAAAGGAGATCACTATCATTTATGATATAGTCAGGGTCAAC 1080
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 ------------------------------------------------------------
consensus_9837#0 TTTTGCATTATTCACTAGGATTTCACCTGATTCACATTTCTGTGCGATTGCTCGGCACGA 1140
consensus_9837#2 ------------------------------------------------------------
consensus_9837#1 ------------------------------------------------------------
consensus_9837#0 GG 1142
consensus_9837#2 --
consensus_9837#1 --
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||