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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1322 fasta sequence
[TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGCTGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGCTCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGATGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACAATCCAAGTCAAGAAGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGATAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCAATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATTAA]
[+] EMBL AI976320 [TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGCTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGCAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGct ]
[+] EMBL CD098136 [ AAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAGTTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAG ]
[+] EMBL CD097940 [ AAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTAATGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTAT ]
[-] EMBL CD097966 [ AGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTAATGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATA ]
[+] EMBL CD067588 [ TCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGG ]
[-] EMBL CD186907 [ GCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAA ]
[+] EMBL CD135726 [ GGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTGATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGT ]
[-] EMBL CD130762 [ GCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTGATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGCTGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGCTCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGATGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACA ]
[-] EMBL CD182305 [ AACTCCATATANTCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGAGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGCTGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAA ]
[-] EMBL CD141330 [ GCGTAATTGAATTACGTGCTCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGATGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGTACAATCCAAGTCAAGAAGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGATAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCAATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATTAA]
consensusID : consensus_9838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence
[TAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCATGGCTTC]
[+] EMBL CD192308 [TAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCATGGCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9838#0 TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAA 60
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 GTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCAT 120
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 GGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAA 180
consensus_9838#1 -----------------------------------------------TAGATACTCGTAA 13
*************
consensus_9838#0 AATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATT 240
consensus_9838#1 AATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATT 73
************************************************************
consensus_9838#0 TAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAAC 300
consensus_9838#1 TAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAAC 133
************************************************************
consensus_9838#0 ACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAAC 360
consensus_9838#1 ACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAAC 193
************************************************************
consensus_9838#0 TGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGG 420
consensus_9838#1 TGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGG 253
************************************************************
consensus_9838#0 TGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCA 480
consensus_9838#1 TGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCATGGCTTC------ 307
***** ***** *** * * * ** * ** * * **** *
consensus_9838#0 TCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGG 540
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 TCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACA 600
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 AGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACC 660
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 TGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATC 720
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 AAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGA 780
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 TGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCT 840
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 AATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACG 900
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 AACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGC 960
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 TGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGC 1020
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 TCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGA 1080
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 TGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACAATCCAAGTCAAGA 1140
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 AGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGA 1200
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 TAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCA 1260
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 ATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATT 1320
consensus_9838#1 ------------------------------------------------------------
consensus_9838#0 AA 1322
consensus_9838#1 --
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||