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Schistosoma mansoni
cluster # 9838 cluster # 9838       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9838#0 length = 1322 sequences # 10  
consensus_9838#1 length = 307 sequences # 1  

consensusID : consensus_9838#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1322
fasta sequence
                              [TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGCTGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGCTCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGATGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACAATCCAAGTCAAGAAGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGATAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCAATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATTAA]

[+] EMBL AI976320             [TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGCTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGCAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD098136             [                                                          AAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAGTTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD097940             [                                                          AAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTAATGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD097966             [                                                           AGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTAATGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD067588             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGG                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD186907             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD135726             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTGATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD130762             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTGATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGCTGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGCTCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGATGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACA                                                                                                                                                                                                   ]
[-] EMBL CD182305             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AACTCCATATANTCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGAGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGCTGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAA                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD141330             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCGTAATTGAATTACGTGCTCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGATGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGTACAATCCAAGTCAAGAAGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGATAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCAATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATTAA]


>consensus_9838#0 TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAA GTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCAT GGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAA AATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATT TAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAAC ACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAAC TGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGG TGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCA TCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGG TCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACA AGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACC TGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATC AAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGA TGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCT AATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACG AACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGC TGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGC TCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGA TGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACAATCCAAGTCAAGA AGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGA TAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCA ATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATT AA



consensusID : consensus_9838#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence
                              [TAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCATGGCTTC]

[+] EMBL CD192308             [TAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCATGGCTTC]


>consensus_9838#1 TAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATAC GAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGA ATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGT TATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTG AAGGAGCTCAGGGTGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCA TGGCTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9838#0      TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAA 60
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      GTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCAT 120
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      GGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAA 180
consensus_9838#1      -----------------------------------------------TAGATACTCGTAA 13
                                                                     *************

consensus_9838#0      AATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATT 240
consensus_9838#1      AATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATT 73
                      ************************************************************

consensus_9838#0      TAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAAC 300
consensus_9838#1      TAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAAC 133
                      ************************************************************

consensus_9838#0      ACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAAC 360
consensus_9838#1      ACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAAC 193
                      ************************************************************

consensus_9838#0      TGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGG 420
consensus_9838#1      TGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGG 253
                      ************************************************************

consensus_9838#0      TGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCA 480
consensus_9838#1      TGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCATGGCTTC------ 307
                      ***** *****  *** * *       * **  * ** *     *  ****  *      

consensus_9838#0      TCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGG 540
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      TCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACA 600
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      AGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACC 660
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      TGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATC 720
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      AAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGA 780
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      TGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCT 840
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      AATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACG 900
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      AACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGC 960
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      TGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGC 1020
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      TCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGA 1080
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      TGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACAATCCAAGTCAAGA 1140
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      AGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGA 1200
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      TAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCA 1260
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      ATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATT 1320
consensus_9838#1      ------------------------------------------------------------
                                                                                  

consensus_9838#0      AA 1322
consensus_9838#1      --
                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)