These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1322 fasta sequence [TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGCTGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGCTCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGATGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACAATCCAAGTCAAGAAGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGATAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCAATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATTAA] [+] EMBL AI976320 [TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGCTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGCAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGct ] [+] EMBL CD098136 [ AAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAGTTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAG ] [+] EMBL CD097940 [ AAGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTAATGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTAT ] [-] EMBL CD097966 [ AGTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCATGGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTAATGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATA ] [+] EMBL CD067588 [ TCCTTGTCAGTGTTTGGCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGG ] [-] EMBL CD186907 [ GCAACTAAGCATCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAA ] [+] EMBL CD135726 [ GGTCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACAAGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTGATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGT ] [-] EMBL CD130762 [ GCAATAAACTGTCGCAAGCAGCGTGGGCACCTGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGTGGTGGAATAATCTCTGTTGATTCTGATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGCTGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGCTCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGATGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACA ] [-] EMBL CD182305 [ AACTCCATATANTCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATCAAGAGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGATGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCTAATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACGAACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGCTGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAA ] [-] EMBL CD141330 [ GCGTAATTGAATTACGTGCTCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGATGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGTACAATCCAAGTCAAGAAGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGATAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCAATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATTAA] consensusID : consensus_9838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [TAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCATGGCTTC] [+] EMBL CD192308 [TAGATACTCGTAAAATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATTTAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAACACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAACTGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGGTGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCATGGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9838#0 TGCATGTAACGATTTATATGGATGTGCACTAATTCCGCAGATCGTGATGGAAAAAGTAAA 60 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 GTCTATATTGACCAAGACATTGGGTGAAAAAGCTGCGATGGATTTTATAAAAGCTTGCAT 120 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 GGAAGTTGATGATACTCAAATAATAAAAAGACGTGTCTCTACTCTACTAGATACTCGTAA 180 consensus_9838#1 -----------------------------------------------TAGATACTCGTAA 13 ************* consensus_9838#0 AATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATT 240 consensus_9838#1 AATGGAGAATCGTCAGGTTTATGAAATTTTGATAAGAGAGAAGATACGAAGAAGTGGATT 73 ************************************************************ consensus_9838#0 TAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAAC 300 consensus_9838#1 TAGTGGAGAGGGTTATCGTAAATCTAATTGTATTGCAGGTGTTTTGAATAATACATTAAC 133 ************************************************************ consensus_9838#0 ACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAAC 360 consensus_9838#1 ACCTCCCGACAAGATTTCAGATTCAGAAAAGGTTGATGTAGAGCAGTTATCATCACAAAC 193 ************************************************************ consensus_9838#0 TGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGG 420 consensus_9838#1 TGCTAAAAAGGGAAGGCAAAAAACCAAGTTCTATCCATTATTTTGTGAAGGAGCTCAGGG 253 ************************************************************ consensus_9838#0 TGATCAACTTGTTTCGCTCTTACCTGGTCGGCATCCTTGTCAGTGTTTGGCAACTAAGCA 480 consensus_9838#1 TGATCTACTTGCATCGTTTTATGGAACTGGGTCTTCTAGCTGAAGCATGGCTTC------ 307 ***** ***** *** * * * ** * ** * * **** * consensus_9838#0 TCAGTTAGTCAACAACTGTTTAAATTGCGGTCGTATAGTCTGTGCACAGGAAGGTTCAGG 540 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 TCCATGCTATTATTGTGGAAATCTTGTTTGTACAATAGATGAGGAATACCAATTATCACA 600 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 AGGAATTGCTAAACATAGTCAGAAACTACGCAATAAACTGTCGCAAGCAGCGTGGGCACC 660 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 TGGCACTGAAACTCCATATTATCGACGTATTCGTCGAGCTCAGAAATCAAAACAAGAATC 720 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 AAGTGGTGGAATAATCTCTGTTGATTCTAATTCAAATGATGGACTAGAAAGTGATACCGA 780 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 TGACAATGACCTAATAAAAACGTCAGCCCAGGGAGCTCAAATTCGTTTGGAACAAGGTCT 840 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 AATAAATGCGTTATGTAAACGTGATAAACTTCTAGAGTTTGATACCACCTGTGCTAGACG 900 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 AACTAGAGTTATTGATGATGAATTAGATTATTTTGCAACAGAGGGTGGCGTTGGATCAGC 960 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 TGCTTGGTTAAGTCCTGAAGTTCGTGAGAGGATAGCTCGACGCGTAATTGAATTACGTGC 1020 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 TCAAAGGCATACACATCGTTTCCAGTCTGCACGTATGTGTATTGACCTAGACAAATGTGA 1080 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 TGTTATAAAAGAGGATACAAGAGATGAAGCAGCTGTGAAATTGCACAATCCAAGTCAAGA 1140 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 AGAAATGGATGANCTTCGTGAATCTCCAACTATTTCAAATGTTAATCAGTCTTTCAGAGA 1200 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 TAGTCAGAAGACCGTTAACTCAAATATTAGTGAAATAACCTTGCCTACTTTTATACCTCA 1260 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 ATCTATGGATAGCAAAAACTATACAGCAAATAATGATCAAAATCCTGTCGTTATGGCATT 1320 consensus_9838#1 ------------------------------------------------------------ consensus_9838#0 AA 1322 consensus_9838#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||