These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 850 fasta sequence [GGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGATTTTTCCCATGCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAGGCGAATCAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACAACATAATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGGCACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATCTATCTATCTGTGTGTGTGTCTATATCTTTCTCTCCGTCTA-TTATATTAACTGTTGCTTTACTTTATGCA] [+] EMBL CD168148 [GGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATGTTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGACTTTTCCCATGCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAGGCGAATCAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACAACATGATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGGCACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCANAAATAAAATTATCAAAATGT ] [+] EMBL CD066880 [ GGACAGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCATATATTAAATGAAAATTTCATACGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCATATTATCAACAAGGACTTTATGTTGTGCATACTTTTCCACCATGTGATTTTTCCCATGCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAAGCGAATCAATCTCATTTATTAGTAGTTATAACAACAGTTTATACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACA ] [+] EMBL CD066363 [ GCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAAATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGATTTTTCCCATGCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTG ] [-] EMBL CD086892 [ AAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGATTTTTCCCATACACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAGGCGAATCAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACAACATAATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGC ] [+] EMBL CD162580 [ CAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAATGTACTTTATTGGATAATATGTGTACTACTACATAATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGGCACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACGAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATCTATCTATCTGTGTGTGTGTCTATATCTTTCTCTCCGTCTA TTATATTAACTGTTGCTTTACTTTATGCA] [+] EMBL CD162605 [ CAATCTCATTTATTAGTAGTTATAACAACAGTTTAGACGAATGTCATCTAATCATCAAACGTACTTTATTGGATAATATGTGTACTACAACATAATTTCTATGAAATTAGTTTAGTCAATTATTGTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGGCACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATCTATCTATCTGGGTGTGTGTCTATATCTTTCTCTCCGGCTA TTATAT ] [-] EMBL CD110995 [ CATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATACGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATTTATCTATCTGTGCGTGTGTTTATATCTTTCTCTCCGTCTA TTATATTAACTGTTGCTTT ] [-] EMBL CD110925 [ CATTTTTTGCCGACTGACAAACAAAGAACTCTACTATTGGATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCATCCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAACATGTACTGCAACAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTTTTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTATACGTATTTCTTTCTATCTATCTATCTGTGTGTGTGTTTATATCTTTCTCTCCGTCTAGTTATATTAACTGTTGCTTTA ] consensusID : consensus_9851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 545 fasta sequence [CCAGCACAACTAGAAGGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGTTGATACCCTGTCTTTGTTTTGCCACTCGTAGCTTCCTTTTAACATAGTCCTTCGCTAATCAACCAATGTGCCACAAGTTAGTTCCTAGTAGGGTCAGACAGTAAAATACATCTTGACCACCTCACATGATGACCATACGATTTTTGTCTTACTTACCTAATAATCTCTATGTAACCTCTTAACATGCCCAAGCAACGCTTCAAAGACATTTGTGATCTAATGTTGCTAGTACTACACATATGTTCTCTAATTTTAAAGGACATGTTTAAAAAATCGTAAAGTGTGGTACACAGTCAACTTTTGTG] [+] EMBL CD120742 [CCAGCACAACTAGAAGGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGTCTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAATGAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGTTGATACCCT ] [-] EMBL CD091709 [ ATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGTTGATACCCTGTCTTTGTTTTGCCACTCGTAGCTTCCTTTTAACATAGTCCTTCGCTAATCAACCAATGTGCCACAAGTTAGTTCCTAGTAGGGTCAGACAGTAAAATACATCTTGACCACCTCACATGATGACCATACGATTTTTGTCTTACTTACCTAATAATCTCTATGTAACCTCTTAACATGCCCAAGCAACGCTTCAAAGACATTTGTGATCTAATGTTGCTAGTACTACACATATGTTCTCTAATTTTAAAGGACATGTTTAAAAAATCGTAAAGTGTGGTACACAGTCAACTTTTGTG] [-] EMBL CD091683 [ ATGGCTGCTGGTATTATCAACGTCGGGCATCCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGTTGATACCCTGTCTTTGTTTTGCCACTCGTAGCTTCCTTTTAACTTACTCCTTCACTGACCAACCATTGTGCCACAAGTTAGTTCCTAGTAGGGTCATACAGTAAAATACATCTTAACCACTTCACATGATGACCAAACGATTTTTTTCTTATTTACCTAATAATCTCTATCTAACCTCTTAACATGCACAAGCAACGCTTCAAAGACATTTGTGATCAAATGTTGCTAGTACTCTACATATGTTCTCTAATTTTAAAGGACATGTTTAAAAAATCGAAAAGTGTGGTACACAGTCAACTTCTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9851#0 ---------------GGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGT 45 consensus_9851#1 CCAGCACAACTAGAAGGTGTTCAACGCAAACTTAATCAGGAAGGTGCTTCATGTGCTTGT 60 ********************************************* consensus_9851#0 CTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAAT 105 consensus_9851#1 CTAGCGCTTCCTGCTGGTAGTAGTCCTGTTGAGTTAGCACAACAAACTCAAATATTAAAT 120 ************************************************************ consensus_9851#0 GAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCAT 165 consensus_9851#1 GAAAATTTCATTCGTTACATGCAAGAGAAAATGGCTGCTGGTATTATCAACGTCGGGCAT 180 ************************************************************ consensus_9851#0 CCAGATTATCAACAAGGACTTTATGTTGTGCATATTTTTCCACCATGTGATTTTTCCCAT 225 consensus_9851#1 CCAGATTATCAACAAGTGGGTTACGCTAGGTTTATTTCACTGGGCATTGATTTCACTGGT 240 **************** *** * * * ***** * ****** * * consensus_9851#0 GCACAACTTGGCCTAGCTGCTCCGGATCTTCATAGACGTGTTGTCCAGGCGAATCAATCT 285 consensus_9851#1 TGATACCCTGTCTTTGTTTTGCCA----CTCGTAGC--TTCCTTTTAACATAGTC--CTT 292 * * * ** * * * * ** ** *** * * * * ** * consensus_9851#0 CATTTATTAGTAGTTATAACAACAGTTTAGACG-AATGTCATCTAATCATCAAATGTACT 344 consensus_9851#1 CGCTAATCAACCAATGTGCCACAAGTTAGTTCCTAGTAGGGTCAGACAGTAAAATACATC 352 * * ** * * * ** **** * * * ** * * **** * consensus_9851#0 TT-ATTGGATAATATGTGTACTACAACATAATTTCTATGAAATTAGTTTAGTCAATTATT 403 consensus_9851#1 TTGACCACCTCACATG---ATGACCATACGATTTTTGT----CTTACTTACCTAATAATC 405 ** * * * *** * ** * * **** * * * *** *** ** consensus_9851#0 GTCAGCCCTGCACTCTCATACATATAAAACTAAATTGCACACATACACACACCGGTGAGG 463 consensus_9851#1 TCTA----TGTAACCTCTTA---ACATGCCCAAGCAACGCTT-CAAAGACATTTGTGATC 457 * ** * *** ** * * * ** * * * * *** **** consensus_9851#0 CACTCATGTTCATGCATAATCATTTTTTGCGAACTAACAAACAAAGAACTCTACTATTGG 523 consensus_9851#1 TAATGTTGCTAGTAC-TACACATATGTTCT---CTAATTT-TAAAGGACATGTTTAAAAA 512 * * ** * * * ** *** * ** **** **** ** ** consensus_9851#0 ATTCTGAAATTTCTTGATATGTGGAATTCCTGTCTGGTCCTAATTCGAAAGAAAACTCAT 583 consensus_9851#1 ATCGTAAAGTGTGGT-ACACAGTCAACTTTTGTG-------------------------- 545 ** * ** * * * * * ** * *** consensus_9851#0 CCATACATATGGGCAGCATCATCGTTCTTTACAATCTACATTCTTTTAAAGAAATACAAC 643 consensus_9851#1 ------------------------------------------------------------ consensus_9851#0 ATGAACTGCAAAAATAAAATTATCAAAATGTTTATTGTGTATCCTGTTCCGTCCTGTTTT 703 consensus_9851#1 ------------------------------------------------------------ consensus_9851#0 TTTTATTGATTCAGTTCATTTCCATTTTTAAATTATTCTACTGCACTGTACACTTGTGTA 763 consensus_9851#1 ------------------------------------------------------------ consensus_9851#0 TACGTATTTCTTTCTATCTATCTATCTGTGTGTGTGTCTATATCTTTCTCTCCGTCTATT 823 consensus_9851#1 ------------------------------------------------------------ consensus_9851#0 ATATTAACTGTTGCTTTACTTTATGCA 850 consensus_9851#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||