These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 818 fasta sequence [AGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCGTAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTTTAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGAGAGAATTTAGGACAGTTTCAGTGTACCAAAATGAGGATCTAAGAAGGAAAGTTATAAATTTAGAAATATCATCCACTTGTCTATCATTAGCAAATCTGGCAAACAAACGGACGAAAATGAATCAGAAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT-AGCCAGAGTAGCGAACACTCGAGGGTCAACTT-CACCAGTGTTCTCATTT-ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT] [+] EMBL AI976426 [AGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCGTAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTTTAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGAGAGAATTTAGGACAGTTTCAGTGTACCAAAATGAGGATCTAAGAAGGAAAGTTATAAATTTAGAAATATCATCCACTTGTCTATCATTAGCAAATCTGGCAAACAAACGGACGAAAATGAATCAGAAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGT ] [-] EMBL BG930437 [ tgatggcGGATCTAAAAAGGAAAGTTATAAATTTAGAAATTTCATCCCCTTGTCTATCATTAGCAAATCTGGCAAACAAACGGACGAAAATGAATCAGAAAGTGGAGTTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGAa ] [+] EMBL CD178542 [ GGAAAGTTATAAATTTAGAAATATCATCCACTTGTCTATCATTAGCAAATCTGGCAAACAAACGGACGAAAATGAATCAGAAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGTACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCA ] [-] EMBL CD084149 [ AATCAGAAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTGCGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCC TCGTCTCG TATTTGGCGCTGCCATc ] [-] EMBL CD135635 [ ACATCCAGTAGCACATGACGTATGCAATATCCACGAGTCCAGTT AGCCTGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCACACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT] [+] EMBL BE519434 [ GTAGCACATGACGTATGCAATATCCACGAGTCCAGTTAAGCMAGAGTASCGAMCACTCGAGGGTCAACTTGGACCAGTGTYCTCATTTCACTCMATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAATAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCC ] [-] EMBL CD193027 [ ATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT] [+] EMBL CD157326 [ ATGACGTATGCAATATCCACGAGTCCAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAGCTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAGCCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGGAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGACATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGATCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATTAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTG ] [+] EMBL CD093715 [ CAGTT AGCCAGAGTAGCGAACACTCGAGGGTCAACTT CACCAGTGTTCTCATTT ACTCCATGCATACGTATTTTAGTGACGAACCTAACCGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGC ] [-] EMBL CD135479 [ TTCGATCCGCAAATCATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGGTGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCTTTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTCCCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT] consensusID : consensus_9852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [GTGAGACATATATGGGTCAAAAAACGTTATCTTGTTGCTTATCATAAAAAAATCAAAGCACAACAAAAAGACGTAAATCAAACAGCTGGCCTTGTGAATACAAAACTATTAAAGTCTAGATGGAAAACCAGAAAATCGCACAATCCGTAGATGATCCATCTTAAGTTGGTGGATAGCTGCAAAAAGCAATAACTGAAAACAAGATTTTCACCATATAAGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCGTAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTATAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGATCCTCATTTA] [+] EMBL CD077131 [GTGAGACATATATGGGTCAAAAAACGTTATCTTGTTGCTTATCATAAAAAAATCAAAGCACAACAAAAAGACGTAAATCAAACAGCTGGCCTTGTGAATACAAAACTATTAAAGTCTAGATGGAAAACCAGAAAATCGCACAATCCGTAGATGATCCATCTTAAGTTGGTGGATAGCTGCAAAAAGCAATAACTGAAAACAAGATTTTCACCATATAAGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCGTAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTATAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGATCCTCATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9852#0 AGAGAAAAGTATAACTTTCATATGCATTGCATAAATACATTGAATGCCTTGACTAAGTTT 60 consensus_9852#1 ------------------------------------------------------------ consensus_9852#0 ATGATTAATTCGGGACACGAAAAAAACAAACTGTCTACTCGTATAAAAATATTGCAACCG 120 consensus_9852#1 ------------------------------------------------------------ consensus_9852#0 TAGTTATCCAACAATACAGATTAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAA 180 consensus_9852#1 ------------------------------------------------------------ consensus_9852#0 GTTTAGATACATAAAGACCGCTGAGGGAAAAACCAATACAGGGGTCTCGATAGAGAGAAT 240 consensus_9852#1 ------------------------------------------------------------ consensus_9852#0 TTAGGACAGTTTCAGTGTACCAAAATGAGGATCTAAGAAGGAAAGTTATAAATTTAGAAA 300 consensus_9852#1 ------------------------------------GTGAGACATATATGGGTCAAAAAA 24 * ** * *** * * *** consensus_9852#0 TATCATCCACTTGTCTATCATTAGCAAATCTGGCAAACA-AACGGACGAAAATGAATCAG 359 consensus_9852#1 CGTTATCTTGTTGCTTATCATAAAAAAATCA---AAGCACAACAAAAAGACGTAAATCAA 81 * *** *** ****** * ***** ** ** *** * * * ***** consensus_9852#0 AAAGTGGAATTTTCTGGTGGCTGAGCAAGTCTTGAATTTTCAGATGCAGACATTTTCTTG 419 consensus_9852#1 ACAGCTGGCCTT----GTGAATACAAAACTATTAAAGTCT-AGATGGAAAACCAGAAAAT 136 * ** * ** *** * ** * ** ** * * ***** * * consensus_9852#0 CGGACATCCAGTAGCACATGACGTATGCAATATCCACGAGTC-CAGTTAGCCAGAGTAGC 478 consensus_9852#1 CGCACAATCCGTAG---ATGATCCATCTTAAGTTGGTGGATAGCTGCAAAAAGCAATAAC 193 ** *** * **** **** ** * * * * * * * * ** * consensus_9852#0 GAACACTCGAGGGTCAACTTCACCAGTGTTCTCATTTACTCCATGCATACGTATTTTAGT 538 consensus_9852#1 TGAAAACAAGATTTTCACCATATAAGAGAA---AAGTATAACTTTCATATGCATTGCATA 250 * * * ** * ** * * ** * * **** * *** * consensus_9852#0 GACGAACCTAAC-CGTTGGAGGGATATCTGGATACTTTGGTCCACATTCGATCCGCAAAT 597 consensus_9852#1 AATACATTGAATGCCTTGACTAAGTTTATGATTAATTCGG---------GACACGAAAAA 301 * * ** * *** * * ** ** ** ** ** ** *** consensus_9852#0 CATAAATACGATTTTCAAAAGGAGTTCGAGTAGGACCTAGAATCATCCCGTTCCATTTGG 657 consensus_9852#1 AACAAACTGTCTACTCGTATAAAAAT---ATTGCAACCGTAGTTATCCAACAATACAGAT 358 * *** * ** * * * * * * * * * **** * consensus_9852#0 TGAGTGTTGCATCAGCCATATTTTCTAATCCCCAACTGATACTACCTTCCTGAGACCCCT 717 consensus_9852#1 TAAACTTCACAACAGATTTAGTATTTAAAAGCCAGACAAGTATAGATACATAAAGACCGC 418 * * * ** *** ** * * *** *** * ** * * * * ** consensus_9852#0 TTTGTCCTTGCTCAAGTTCATCAAGAAGATAAAAATTTCGTGGAACACAAACTTTTTCTC 777 consensus_9852#1 T------------GAGGGAAAAACCAATACAGGGGTCTCGATAGATCCTCATTTA----- 461 * ** * * ** * * * *** * * * ** consensus_9852#0 CCTTCGTCTCGTTATTTGGCGCTGCCATTCTATATGCCGCT 818 consensus_9852#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||