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Schistosoma mansoni
cluster # 9853 cluster # 9853       Sequences # 11       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9853#0 length = 801 sequences # 8  
consensus_9853#1 length = 556 sequences # 3  

consensusID : consensus_9853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 801
fasta sequence
                              [AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTTGACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGC-TGGTGGAAATCGCTCTCAGACATGAACCCCTCGGACGAATCTGGCGC]

[-] EMBL CD180749             [AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTTGACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATT                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD124250             [                             CATTATTAGTATTGCTGATATGTTTCGGTTTGACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTANGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCCAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTG                                                           ]
[-] EMBL CD124208             [                                                                                                      TGGTTCA TTTCAATTGGACCACGTTCATACATGTAT AAGAAGCAATAGCTAGTAATTTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGA                                                          ]
[-] EMBL CD093006             [                                                                                                                 CAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGC TGGTGGA                                        ]
[-] EMBL CD134548             [                                                                                                                                          TGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD093016             [                                                                                                                                                               atgcCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGC TGGTGGA                                        ]
[-] EMBL CD124211             [                                                                                                                                                                                                                                                                                                                                                                                          CTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTCGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGA                                                          ]
[-] EMBL CD078151             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCCCTCGGACGAATCTGGCGC]


>consensus_9853#0 AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTT GACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGG ACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGC TAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCC ATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATG AAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCA TTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTAT CCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCG AGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATC CCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCAT CGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGC ATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACC TGTGATACAAGCCTGGATATTTGAATTGTAATGCTGGTGGAAATCGCTCTCAGACATGAA CCCCTCGGACGAATCTGGCGC



consensusID : consensus_9853#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 556
fasta sequence
                              [AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTTGGGAGAGAGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCATGCAACAAATCACAAGAGTAAA]

[-] EMBL CD114951             [AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAGTTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTA                                                                                           ]
[+] EMBL CD111285             [                                                                                AACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATGCAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCAGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTT                                                                                                                 ]
[-] EMBL CD110847             [                                                                                 ACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTTGGGAGAGAGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCATGCAACAAATCACAAGAGTAAA]


>consensus_9853#1 AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTATACTGTCCATCGTATAT ACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGAT GATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATA CAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAA GTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTG ACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAAC AAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCG ACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTT GGGAGAGAGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCATGCAAC AAATCACAAGAGTAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9853#0      AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTT 60
consensus_9853#1      ------------------------------------------------------------
                                                                                  

consensus_9853#0      GACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGG 120
consensus_9853#1      ------------------------------------------------------------
                                                                                  

consensus_9853#0      ACCACGT-TCATACA--TGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAA 177
consensus_9853#1      AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTAT-ACTGTCCATCGTATA 59
                      * *** * ** * **  ****   * ** ** * *       **  *  **    * * *

consensus_9853#0      TGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAA 237
consensus_9853#1      TACTGTACTAGGTTGACGA--TGAACACTTTG-TGCTCCA------CCTTTTGAATCAGT 110
                      * **  ***** *  ** *  ** * ****** *  *  *      * ***   ** *  

consensus_9853#0      TCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTG 297
consensus_9853#1      TGCATTGGATGATGCTACAGAAGCA---CGTGGGTCCCAAATACGTACAGTACAATCCCA 167
                      * ***   **     ****  * **   *    * *   *  *     * *  *  *   

consensus_9853#0      ATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATG 357
consensus_9853#1      ACTACCTGTGATACAAGC--CTGGAT--ATTTGAATTGTAATGCATCGTGCTAATCGCTC 223
                      *  *   *  **   *    ******  ***     * **  ** *  *   *  ** * 

consensus_9853#0      GCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGC 417
consensus_9853#1      TCAGACATGAACCTAAAGTTTGATTCTGACT--AGTGTTGCAGTCGAACAATTT--TAAT 279
                       **   *  * * **   ***  **   **    * * *    ** **** **    *  

consensus_9853#0      TATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACA 477
consensus_9853#1      TCTCCA----TCTAGTGAACCG-----------CTGACGACGTGTACAGTATCAGAAAAA 324
                      * ***     ** * ******             ** * *  ** * *  **   * * *

consensus_9853#0      TCGAGTTTGGTATCTGAGACTTGATT--CACGTTGTTCTAAAGGTGCATGCATTTGACGG 535
consensus_9853#1      GCG------GTATCTAAAACGGGAGTACTATGTTGGTA-AAACAAACGTTGACTTCCTGA 377
                       **      ****** * **  ** *   * **** *  ***    * *  * **   * 

consensus_9853#0      AGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTG 595
consensus_9853#1      AGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAG------GAATTG 431
                      **   *   ** *   *    *** ***    * **  ** *   * *        * **

consensus_9853#0      TCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCA 655
consensus_9853#1      -----CGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTTGGGAGA 486
                           ** *  * ** * * ******   * ***** *     * *** *  ***    *

consensus_9853#0      GTTGCATTGGATGATGC-TACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCA 714
consensus_9853#1      G------AGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCA--TGCA 538
                      *       **** **   *** **  ***    **    **   *  ** * **    **

consensus_9853#0      ACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCTGGTGGAAATCGCTCTCAGA 774
consensus_9853#1      ACAAATCACAAGAGTAAA------------------------------------------ 556
                      ** *      * *  *                                            

consensus_9853#0      CATGAACCCCTCGGACGAATCTGGCGC 801
consensus_9853#1      ---------------------------
                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)