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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 801 fasta sequence
[AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTTGACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGC-TGGTGGAAATCGCTCTCAGACATGAACCCCTCGGACGAATCTGGCGC]
[-] EMBL CD180749 [AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTTGACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATT ]
[+] EMBL CD124250 [ CATTATTAGTATTGCTGATATGTTTCGGTTTGACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTANGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCCAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTG ]
[-] EMBL CD124208 [ TGGTTCA TTTCAATTGGACCACGTTCATACATGTAT AAGAAGCAATAGCTAGTAATTTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGA ]
[-] EMBL CD093006 [ CAATTGGACCACGTTCATACATGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGC TGGTGGA ]
[-] EMBL CD134548 [ TGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGT ]
[-] EMBL CD093016 [ atgcCCATCTTCAGAAAATGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAATCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTGATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATGGCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGC TGGTGGA ]
[-] EMBL CD124211 [ CTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGCTATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTCGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGA ]
[-] EMBL CD078151 [ AATACATCGAGTTTGGTATCTGAGACTTGATTCACGTTGTTCTAAAGGTGCATGCATTTGACGGAGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCCCTCGGACGAATCTGGCGC]
consensusID : consensus_9853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 556 fasta sequence
[AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTTGGGAGAGAGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCATGCAACAAATCACAAGAGTAAA]
[-] EMBL CD114951 [AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTATACTGTCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAGTTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTA ]
[+] EMBL CD111285 [ AACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATGCAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCAGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTT ]
[-] EMBL CD110847 [ ACACTTTGTGCTCCACCTTTTGAATCAGTTGCATTGGATGATGCTACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCAACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCATCGTGCTAATCGCTCTCAGACATGAACCTAAAGTTTGATTCTGACTAGTGTTGCAGTCGAACAATTTTAATTCTCCATCTAGTGAACCGCTGACGACGTGTACAGTATCAGAAAAAGCGGTATCTAAAACGGGAGTACTATGTTGGTAAAACAAACGTTGACTTCCTGAAGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAGGAATTGCGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTTGGGAGAGAGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCATGCAACAAATCACAAGAGTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9853#0 AACAGTACCACCACCACCAGTAGCATTAACATTATTAGTATTGCTGATATGTTTCGGTTT 60
consensus_9853#1 ------------------------------------------------------------
consensus_9853#0 GACTTCATTTTCAGCAACACTTCTTATGTAAATAGTTGGTTCTGGTTCATTTTCAATTGG 120
consensus_9853#1 ------------------------------------------------------------
consensus_9853#0 ACCACGT-TCATACA--TGTATGAAGAAGCAATAGCTAGTAAATTGCCATCTTCAGAAAA 177
consensus_9853#1 AGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGCTCCGTAT-ACTGTCCATCGTATA 59
* *** * ** * ** **** * ** ** * * ** * ** * * *
consensus_9853#0 TGCTAAACTAGATATACTAGTTGGATACTTTGATAATTGAGCAAGTCTTTTACGATTAAA 237
consensus_9853#1 TACTGTACTAGGTTGACGA--TGAACACTTTG-TGCTCCA------CCTTTTGAATCAGT 110
* ** ***** * ** * ** * ****** * * * * *** ** *
consensus_9853#0 TCCATCCCATATATTTACAATACCATCACAACCGCCTGTAGCAAACGTATTGTATCCTTG 297
consensus_9853#1 TGCATTGGATGATGCTACAGAAGCA---CGTGGGTCCCAAATACGTACAGTACAATCCCA 167
* *** ** **** * ** * * * * * * * * *
consensus_9853#0 ATGAAAAGCAATGGCAATTACTGGATAAATTGTTTCTTTATCGCCTTCTTTAACACGATG 357
consensus_9853#1 ACTACCTGTGATACAAGC--CTGGAT--ATTTGAATTGTAATGCATCGTGCTAATCGCTC 223
* * * ** * ****** *** * ** ** * * * ** *
consensus_9853#0 GCATTTAAAAGCGTACTTTTTCTTTTGAACCTCCGGGCTAGGATCAAACATTTCGACAGC 417
consensus_9853#1 TCAGACATGAACCTAAAGTTTGATTCTGACT--AGTGTTGCAGTCGAACAATTT--TAAT 279
** * * * ** *** ** ** * * * ** **** ** *
consensus_9853#0 TATCCGACCTTCAATTGAACCTAATATATAACCTTGTCCATTTGGAAAACATTGAATACA 477
consensus_9853#1 TCTCCA----TCTAGTGAACCG-----------CTGACGACGTGTACAGTATCAGAAAAA 324
* *** ** * ****** ** * * ** * * ** * * *
consensus_9853#0 TCGAGTTTGGTATCTGAGACTTGATT--CACGTTGTTCTAAAGGTGCATGCATTTGACGG 535
consensus_9853#1 GCG------GTATCTAAAACGGGAGTACTATGTTGGTA-AAACAAACGTTGACTTCCTGA 377
** ****** * ** ** * * **** * *** * * * ** *
consensus_9853#0 AGATCCCATATTAGCACATGTCGTCCAGCTGTACCTACAACCAGTTGGTTCCGTATACTG 595
consensus_9853#1 AGCCACATCATAAATTCGCACCGTACAGTCCCAACTTGAAGCGACTAG------GAATTG 431
** * ** * * *** *** * ** ** * * * * **
consensus_9853#0 TCCATCGTATATACTGTACTAGGTTGACGATGAACACTTTGTGCTCCACCTTTTGAATCA 655
consensus_9853#1 -----CGGAGCTGCTTTCCCAGGTTGGAAACGAACAGTAGTAACACCATCAGTTGGGAGA 486
** * * ** * * ****** * ***** * * *** * *** *
consensus_9853#0 GTTGCATTGGATGATGC-TACAGAAGCACGTGGGTCCCAAATACGTACAGTACAATCCCA 714
consensus_9853#1 G------AGGATAATTTGTACTGATCCACAGTAGTAGTCAAAGGGGCCATTGCA--TGCA 538
* **** ** *** ** *** ** ** * ** * ** **
consensus_9853#0 ACTACCTGTGATACAAGCCTGGATATTTGAATTGTAATGCTGGTGGAAATCGCTCTCAGA 774
consensus_9853#1 ACAAATCACAAGAGTAAA------------------------------------------ 556
** * * * *
consensus_9853#0 CATGAACCCCTCGGACGAATCTGGCGC 801
consensus_9853#1 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||