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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 929 fasta sequence
[ATTTATTAATTTTATGTTATACAGTGAAATAAAGAGATTTATTAAAACAATTTAAAGTAATTGAATTATCTGTAGCCTGCCTACTACTACTGATACTAAAATGAGTGTGAAAGGATTTTTTAAAAGTGTATTAAATTCTGGAG-AACAAGAAGAAGAAACTGGAACCACCGGGGCCACATCAACAACAACTTCATTGTCTGGTTCAGCTACAGCTGGAGTAAATAATTTCCTATCTGGTACATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTT-GTCGAATAAACTAACGTCATTCAAAATGCCTGGCG-AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT-GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA-GAACGTCAAGTATCAGTTGAAAGTATAGACAG-TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAA-TGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATNTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTANCACGTGAACGGGCTGAGCGTCAAAAT]
[+] EMBL CD133832 [ATTTATTAATTTTATGTTATACAGTGAAATAAAGAGATTTATTAAAACAATTTAAAGTAATTGAATTATCTGTAGCCTGCCTACTACTACTGATACTAAAATGAGTGTGAAAGGATTTTTTAAAAGTGTATTAAATTCTGGAG AACAAGAAGAAGAAACTGGAACCACCGGGGCCACATCAACAACAACTTCATTGTCTGGTTCAGCTACAGCTGGAGTAAATGATTTCCTATCTGGTACATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTT GTCGAATAAACTAACGTCATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAACTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTANATCGGANATTCGTGCCTTAGTCTCTAATTTACTTCAACANAGC ]
[+] EMBL SM853 [ TAATTGAATTATCTGTAGCCTGCCTACTACTACTGATATTAAAATGAGTGTGAAAGGATTTTTTAAAAGTGTATNAAATTCTGGAGNAACAAGAAGAAGAAACTGGAACCACCGGGGCCACATCAACAACAACTTCATTGTCTGGTTCAGCTACAGCTGGAGTAAATAATTTCCTATCTGGTACATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTTGGTCGAATAAACTAACGTCATTCAAAATGCCTGGCGAAACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGNTCTGCCAGTGGAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTAGGAACGTCAAGTATCAGTTGGAAGTATAGACAG GNTGGCAGATGAAGATGCTGANCGACGTTAA ]
[+] EMBL CD113736 [ TTCAGCTACCGGTGGAATAAATAATTTCCTATCTGGTACATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTT GTCGAATAAACTAACGTCATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAGTTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCAT ]
[+] EMBL CD080079 [ CTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTT GTCGAATAAACTAACGTCATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAA TGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGC AAAATATCTTTATGTATTATTGAAAGATCAAGTGATNTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTANCACGTGAACGGGCTGAGCGTCAAAAT]
[+] EMBL CD063315 [ CGTTATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAA ]
[+] EMBL CD063520 [ CGTCATTCAAAATGCCTGGCG AACAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAA ]
[+] EMBL CD063473 [ CGTTTTTCAAAATGCCTGGCG AGCAGTCGACCAATGAGAGTGAAAAGAAAAAGAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGCTGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAA ]
[+] EMBL CD153708 [ gcttccTCTGCCAGT GAATATGGAGATGATGGTGATCGTCCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAA TGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATtt ]
[+] EMBL CD197773 [ CCAATGTATGCAGAAGTAGCTCCAGTA GAACGTCAAGTATCAGTTGAAAGTATAGACAG TTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAA TGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGGAAGATC ]
[+] EMBL AF155775 [ CGTCCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAATTGAAGATTATTCTCCANCTTATATCATTATGCATTTAAGNTTCTCATTATATCATGAAACTGTCTCCTCAAA ]
consensusID : consensus_9861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[AGTAGAACGTCAAGTATCAGTTGAAAGTATAGACAGTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATGCGTTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCA]
[-] EMBL CD197865 [AGTAGAACGTCAAGTATCAGTTGAAAGTATAGACAGTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAATTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGTGAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATGCGTTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCA]
consensusID : consensus_9861#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[CGTCACGTGGGTTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAATGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCATTGAAGGTGA]
[+] EMBL CD077909 [CGTCACGTGGGTTACAAACAAAGGGCATGAAATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCAATGTAATGAAAATGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATTATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATTGAAAGATCAAGTGATTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTTTACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCATTGAAGGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9861#0 ATTTATTAATTTTATGTTATACAGTGAAATAAAGAGATTTATTAAAACAATTTAAAGTAA 60
consensus_9861#1 ------------------------------------------------------------
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 TTGAATTATCTGTAGCCTGCCTACTACTACTGATACTAAAATGAGTGTGAAAGGATTTTT 120
consensus_9861#1 ------------------------------------------------------------
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 TAAAAGTGTATTAAATTCTGGAGAACAAGAAGAAGAAACTGGAACCACCGGGGCCACATC 180
consensus_9861#1 ------------------------------------------------------------
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 AACAACAACTTCATTGTCTGGTTCAGCTACAGCTGGAGTAAATAATTTCCTATCTGGTAC 240
consensus_9861#1 ------------------------------------------------------------
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 ATCAAAATTTCTTGATTCTGTTCAAACAAAAAAGAATGGTTTAATTAGTGATTTGTCGAA 300
consensus_9861#1 ------------------------------------------------------------
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 TAAACTAACGTCATTCAAAATGCCTGGCGAACAGTCGACCAATGAGAGTGAAAAGAAAAA 360
consensus_9861#1 ------------------------------------------------------------
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 GAAATCTAATAGTAATGATGATGATGACAGTTCTGCCAGTGAATATGGAGATGATGGTGA 420
consensus_9861#1 ------------------------------------------------------------
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 TCGTCCAATGTATGCAGAAGTAGCTCCAGTAGAACGTCAAGTATCAGTTGAAAGTATAGA 480
consensus_9861#1 ---------------------------AGTAGAACGTCAAGTATCAGTTGAAAGTATAGA 33
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 CAGTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAA 540
consensus_9861#1 CAGTTTGCCAGATGAAGATGCTGAACGACGTAAATCGGAAATTCGTGCCTTAGTCTCTAA 93
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 TTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGT 600
consensus_9861#1 TTTACTTCAACAAAGCTTGATCGAAGAAAAGATGGTGAAGAATTTCAGAGATTTCATTGT 153
consensus_9861#2 ------------------------------------------------------------
consensus_9861#0 GAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAA 660
consensus_9861#1 GAGGCATAGTGGTCGTTCAAGATTTGCCAAGGAACTAAAATTACAAACAAAGGGCATGAA 213
consensus_9861#2 -----------------------------CGTCACGTGGGTTACAAACAAAGGGCATGAA 31
* ** ********************
consensus_9861#0 ATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCA 720
consensus_9861#1 ATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTAT------- 266
consensus_9861#2 ATGTATATCTAATCAACTTCTGGAACAATTGGCATTATTCATCGGTCCATTATTAAATCA 91
*****************************************************
consensus_9861#0 ATGTAATGAAAATGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATT 780
consensus_9861#1 ------------------------------------------GCGTTTAAGTTTCTCATT 284
consensus_9861#2 ATGTAATGAAAATGAAGATTATGCTCCAGCTTATATCATTATGCATTTAAGTTTCTCATT 151
** ***************
consensus_9861#0 ATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATT 840
consensus_9861#1 ATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATT 344
consensus_9861#2 ATATCATGAAACTGTCTCTTCAAATGGTACCGCTGAGCAAAAATATCTTTATGTATTATT 211
************************************************************
consensus_9861#0 GAAAGATCAAGTGATNTTGGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTT 900
consensus_9861#1 GAAAGATCAAGTGATTT-GGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTT 403
consensus_9861#2 GAAAGATCAAGTGATTT-GGCAGTCAATGAGGTTCTGGAATGCTGCCTTTTTCATTGCTT 270
*************** * ******************************************
consensus_9861#0 TANCACGTGAACGGGCTGAGCGTCAAAAT-------------------- 929
consensus_9861#1 TACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCA---------- 442
consensus_9861#2 TACAACGTGAACGGGCTGAGCGTCAAAGATATCCAGTCATTGAAGGTGA 319
** ***********************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||