These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9864#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 964 fasta sequence [GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAATAACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAATTTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTTTTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTCCATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAAGACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATATGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTAGCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATATTTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGTATAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACGG] [-] EMBL CD160228 [GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAATAACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAATTTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTTTTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTCCATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTT ] [-] EMBL CD160110 [ TGGATCCATAGTGAATAATTTGTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTTTTGGTCCCATTTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATCCGTTCCATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTT ] [+] EMBL CD155919 [ CTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAAGACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATATGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTAGCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATATTTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGTATAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAA ] [-] EMBL CD181205 [ CCATGGAACCGTGTAACTTTTCGACGTGAATATGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTAGCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATATTTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTtcntga ] [+] EMBL CD199665 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ] [+] EMBL CD199685 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ] [+] EMBL CD199745 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ] [+] EMBL CD199766 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ] [+] EMBL CD199771 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ] [+] EMBL CD199655 [ CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ] [-] EMBL CD199672 [ AAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACGG] consensusID : consensus_9864#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [CTATACCATTTGGCTCAATCGCCAATATGATACTAACAAGAAAAAATTGTCAAGTATGTATTATTGTGTTTAATGCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATTTAATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTTTCCCAAAAAATGTTGAAATGTACTGTTCATTTTATTCTTATGAATATCANAGC] [+] EMBL CD183022 [CTATACCATTTGGCTCAATCGCCAATATGATACTAACAAGAAAAAATTGTCAAGTATGTATTATTGTGTTTAATGCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATTTAATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTTTCCCAAAAAATGTTGAAATGTACTGTTCATTTTATTCTTATGAATATCANAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9864#0 GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAAT 60 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 AACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAAT 120 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 TTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTT 180 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 TTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTC 240 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 CATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGT 300 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 TGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACA 360 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 CCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCA 420 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 TGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAA 480 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 GACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATA 540 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 TGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTA 600 consensus_9864#1 ----------------------------------------------------CTATACCA 8 * ** * consensus_9864#0 GCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATAT 660 consensus_9864#1 TTTGGCTCAATCGCCAATATGATACTAACAAGAAA----AAATTGTCAAGTATGTATTAT 64 * ** * ** ** * * * * * * ** ** * *** consensus_9864#0 T-TGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGT 719 consensus_9864#1 TGTGTTTAAT--GCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATTTA 122 * ** * *** ** * *** * * * ** * * * * * * * consensus_9864#0 ATAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACA 779 consensus_9864#1 ATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTT-TCCCAAAAAATG-TTGAAA 180 *** ** *** **** ** * ** *** * *** **** **** * consensus_9864#0 ATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAAC 839 consensus_9864#1 TGTACTGTTCATTTTATTCTTATGAATATCANAGC------------------------- 215 * * * ** ** *** *** consensus_9864#0 TTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAA 899 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 AGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAAC 959 consensus_9864#1 ------------------------------------------------------------ consensus_9864#0 TACGG 964 consensus_9864#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||