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Schistosoma mansoni
cluster # 9864 cluster # 9864       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9864#0 length = 964 sequences # 11  
consensus_9864#1 length = 215 sequences # 1  

consensusID : consensus_9864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 964
fasta sequence
                              [GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAATAACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAATTTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTTTTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTCCATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAAGACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATATGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTAGCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATATTTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGTATAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACGG]

[-] EMBL CD160228             [GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAATAACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAATTTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTTTTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTCCATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD160110             [                                                                                                     TGGATCCATAGTGAATAATTTGTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTTTTGGTCCCATTTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATCCGTTCCATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD155919             [                                                                                                                                                                                                                                                                                  CTTCTCGATGAATTTCTAAAGTTTGTTGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACACCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCATGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAAGACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATATGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTAGCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATATTTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGTATAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAA                                                                ]
[-] EMBL CD181205             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCATGGAACCGTGTAACTTTTCGACGTGAATATGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTAGCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATATTTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTtcntga                                                                                                                                                                                                                                                    ]
[+] EMBL CD199665             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199685             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199745             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199766             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199771             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[+] EMBL CD199655             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACG ]
[-] EMBL CD199672             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACTTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAAGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACTACGG]


>consensus_9864#0 GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAAT AACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAAT TTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTT TTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTC CATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGT TGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACA CCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCA TGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAA GACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATA TGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTA GCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATAT TTGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGTA TAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACAA TTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAACT TCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAAA GAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAACT ACGG



consensusID : consensus_9864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence
                              [CTATACCATTTGGCTCAATCGCCAATATGATACTAACAAGAAAAAATTGTCAAGTATGTATTATTGTGTTTAATGCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATTTAATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTTTCCCAAAAAATGTTGAAATGTACTGTTCATTTTATTCTTATGAATATCANAGC]

[+] EMBL CD183022             [CTATACCATTTGGCTCAATCGCCAATATGATACTAACAAGAAAAAATTGTCAAGTATGTATTATTGTGTTTAATGCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATTTAATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTTTCCCAAAAAATGTTGAAATGTACTGTTCATTTTATTCTTATGAATATCANAGC]


>consensus_9864#1 CTATACCATTTGGCTCAATCGCCAATATGATACTAACAAGAAAAAATTGTCAAGTATGTA TTATTGTGTTTAATGCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATT TAATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTTTCCCAAAAAATGTTGAAA TGTACTGTTCATTTTATTCTTATGAATATCANAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9864#0      GTTGCTTGTGCTCTCAATAAATTAGCTTGTGGACCAGATATACTTGAGGCTACTTTCAAT 60
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      AACGGTTTGATAAGTCGATTAGCCAAGACACTTAAAAATACTGGATCCATAGTTGATAAT 120
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      TTTTCTTCACTGAAGGCATCTAATTCACCTTTGACGGAAGGAAGAAAAGCGTGGAAATTT 180
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      TTGGTCCCATGTACTACACTTGGTAGTATGTGATTGTGATTTGACTCATCTGATTCGTTC 240
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      CATGGATTTTGAATAAAATCTCTACAACTATTATCTTCTCGATGAATTTCTAAAGTTTGT 300
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      TGCCTTGAAAATTCAGTACGAAGAATGTTAAAATTACTCTCCATAGGAAATAATGGTACA 360
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      CCATTCATTTGTAATTTAGCAACATGAGCTGATATAGCATTGCTGTATTCTAAAAATGCA 420
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      TGACGTGAGTCGTTTTTCTTGAATGATATCACACGTAGAATTTGTCCGAATGGTTTAAAA 480
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      GACATAAAAAATGGAAGATAACCGATTTCCATGGAACCGTGTAACTTTTCGACGTGAATA 540
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      TGCAAAACAGTTTTAGGAGAGTCTTCATTTTCGCATCGAAATGCTACAAATTGTTTATTA 600
consensus_9864#1      ----------------------------------------------------CTATACCA 8
                                                                           * **  *

consensus_9864#0      GCTTCTTCGACAGCAGATGTAGCAGCATTATTAGTCATTGAGTTAGTGAGAGAAGAATAT 660
consensus_9864#1      TTTGGCTCAATCGCCAATATGATACTAACAAGAAA----AAATTGTCAAGTATGTATTAT 64
                        *   ** *  **  ** *   *  *  *  *       * **    **     * ***

consensus_9864#0      T-TGCTAAATTGAACTTCTAGGGGATATTTTCCACGTAGAATCGGAGAACATATTACTGT 719
consensus_9864#1      TGTGTTTAAT--GCTTTTCATTAACTATCATTTCCTTTCAAACATATTAGTTGTCATTTA 122
                      * ** * ***     **  *     ***  *   * *  ** *  *  *  * * * *  

consensus_9864#0      ATAGTAGCCAAACATAGATTCTGCCGACTCCAAAGTATCCATTTCAATTAATGCTTGACA 779
consensus_9864#1      ATAAGAGTCAATCATAACACTTGTACATTCGTCTTTATTT-TCCCAAAAAATG-TTGAAA 180
                      ***  ** *** ****     **   * **     ***   *  ***  **** **** *

consensus_9864#0      ATTTTTTCTTGTTAGTATCATATTGGCGATTGAGCCAAATGGTATAGCTAACGTTGAAAC 839
consensus_9864#1      TGTACTGTTCATTTTATTCTTATGAATATCANAGC------------------------- 215
                        *  *  *  **    ** ***         ***                         

consensus_9864#0      TTCGAGCTCATTCACATCGGATGGTAAGCCACGGATGTGGAGAACACGGGATTCCGGCAA 899
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      AGAATTCGATGATGTACTATCTAACCTTGCCTTTTTTGATTCAAAACGACTGGAGTCAAC 959
consensus_9864#1      ------------------------------------------------------------
                                                                                  

consensus_9864#0      TACGG 964
consensus_9864#1      -----
                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)