These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1330 fasta sequence [GATACACCCAACTGCTGGAATGCAGTTTGTTAATCCCCAAAAGTTTAGATCTGCGCAGATGATCGCTACCCCGTTGATAGCTAATCCGGCTGTTGCGAATCAGTCTCAACAGAATGAGGAGACGCCGAAGAGCAAAAATGGTCGCCGTCGGTCAAGATCACATTCCCACAAATATCCTAGGTCACACAGACGATCTCGTTCTAGAAGGTCTAGCGGAAACCGGCACTCACGACGTCGTCACTCATCTAGCTCATCGAGTTCGGTGCACCGCTCTAGCCGTGCTCGCCACAGATCGCGGTCATATCAAAATTCTAAAGAACGTCACCGCTCATCTACTGCTCATGGTCATCTTAAAGGTAGTAGGAAACGCAGTATTGATCATAAAAGAAAGTTAGAGGCCGCTGAAAGTATAGGAAAACGGGAATCAGACAGAAAAAAGTTTCCTACTTCCCAGAAAAAACTGGACCACAAAGATTCACACTTGGAAGAGACAAAGAGATCTTATCATCGCTCAGGCACTCCCGAAAAAAAAAGAAATTGTGCGACAAAATTGAACGTACATCATCTGTTAAAAAAAGCGAGACTAGCACAAAAAATGTCACTCGACCCGTCGTCAAAAGCCTTACAGAAAAAGATTCTGATGTTAAGCGAGGATCTGANTATGTGCAATACGTTCAGACGCAGAAATTAACTTCACGTATTACTGGTACACTCGAAGATGTTTACCGTAAGACCCAACCAAAAATGGGTTACAGACAGTCTTCGGAACAAACTGATAGTAATAATCCCTCGAATAGTAGCCCTAATTCATCATCAAACAGCGAAAATCAATCTCCTAGAAAGCTTATTTCACTTAAGCATGAACAGTCGAGTAATAGTAGCTCGACAGATTCTGACTCAAGTCAACATGAAACTAATCATTCAACCGGTGAGGTTAAACG-TCG-TCAC-AGTGAGGCTATCC-GAAATGAACGACAAG-TGAGTAATATGAAATCTC-AAAAACGG-ACGT-CACAGTCACTCCATCCATCCAAAAGTGTGAATATAGGTAAGGCTTAGTCCCTCCGTTGAGTTTTGGAACTACTAATGAAATTGTCACAGCTCC-CTCTAACAATTAAGTAAACTGCTATCCATACAAATCATTCAGTACTTTGTATCTACGCCCTTGAGGTTTCATGACAGATCAACTTTTTGTCTTCTTGAGTATTGATTTAATTACATCTGAACCTGTGTGTACACTTTCCGTTTAGGTCAAGTAACATCAGTCTACAAAGCGCTGAGTGTAATTTTCAGCTGTATTTTTAAACCTTGTACATTTTGGCAATAAATTGGGATC] [+] EMBL CD166988 [GATACACCCAACTGCTGGAATGCAGTTTGTTAATCCCCAAAAGTTTAGATCTGCGCAGATGATCCCTACCCCGTTGATAGCTAATCCGGCTGTTGCGAATCAATCTCAACAGAATGAGGAGACGCCGAAGAGCAAAAATGGTCGCCG ] [-] EMBL CD146419 [ tctcAATCCCCAAAAGTTTAGATCTGCGCAGATGATCGCTACCCCGTTGATAGCTAATCCGGCTGTTGCGAATCAGTCTCAACAGAATGAGGAGACGCCGAAGAGCAAAAATGGTCGCCGTCGGTCAAGATCACATTCCCACAAATATCCTAGGTCACACAGACGATCTCGTTCTAGAAGGTCTAGCGGAAACCGGCACTCACGACGTCGTCACTCATCTAGCTCATCGAGTTCGGTGCACCGCTCTAGCCGTGCTCACCACAGATCGCGGTCATATCAAAATTCTAAAGAACGTCACCGCTCATCTACTGCTCATGGTCATCTTAAAGGTAGTAGGAAACGCAGTATTGATCATAAAAGAAAGTT ] [+] EMBL CD095071 [ GCTACCCCGTTGATAGCTAATCCGGCTGTTGCGAATCAGTCTCAACAGAATGAGGAGACGCCGAAGAGCAAAAATGGTCGCCGTCGGTCAAGATCACATTCCCACAAATATCCTAGGTCACACAGACGATCTCGTTCTAGAAGGTCTAGCGGAAACCGGCACTCACGACGTCGTCACTCATCTAGCTCATCGAGTTCGGTGCACCGCTCTAGCCGTGCTCGCCACAGATCGCGGTCATATCAAAATTCTAAAGAACGTCACCGCTCATCTACTGCTCATGGTCATCTTAAAGGTAGTAGGAAACGCAGTATTGATCATAAAAGAAAGTTAGAAGCCGCTGAAAGTATAGGAAAACGGGAATCAGACAGAAAAAAGTTTCCTACTTCCCAGAAAAAACTGGACCACAAAGATTCACACTTGGAAGAGACAAAGAGATCTTATCATCGCTCAGGCACTCCCGAAAAAAAAAGAAATTGTGCGACAAAATTGAACGTACATCATCTGTTAAAAAAAGCGAGACTAGCACAAAAAATGTCACTCGACCCGTCGTCAAAAGCCTTACAGAAAAAGATTCTGATGTTAAGCGAGGATCTGANTATGTGCAATACGTTCAG ] [+] EMBL SMT14502 [ ACAGACGANCTCGTCCTAGAAGGTCTAGCGGAAACCGGCACTCACGACGTCGTCACTCANCTAGCTCATCGAGTTCGGTGCACCGCTCTAGCCGTGCTCGCCACAGANCGCGGTCATATCAAANTNCTAAAGANCGTCA ] [+] EMBL CD096537 [ TCGTTCTAGAAGGTCTAGCGGAAACCGGCACTCACGACGTCGTCACTCATCTAGCTCATCGAGTTCGGTGCACCGCTCTAGCCGTGCTCGCCACAGATCGCGGTCATATCAAAATTCTAAAGAACGTCACCGCTCATCTACTGCTCATGGTCATCTTAAAGGTAATAGGAAACGCAGTATTGATCATAAAAGAAAGTTAGAGGCCGC ] [+] EMBL CD096543 [ TCGTTCTAGAAGGTCTAGCGGAAACCGGCACTCACGACGTCGTCACTCATCTAGCTCATCGAGTTCGGTGCACCGCTCTAGCCGTGCTCGCCACAGATCGCGGTCATATCAAAATTCTAAAGAACGTCACCGCTCATCTACTGCTCATGGTCATCTTAAAGGTAATAGGAAACGCAGTATTGATCATAAAAGAAAGTTAGAGGCCGC ] [+] EMBL AI976266 [ GCACAAAAAATGTCACTCGACCCGTCGTCAAAAGCCTTACAGAAAAAGATTCTGATGTTAAGCGAGAATCTGATAATGTGCAATACGTTCAGACGCAGAAATTAACTTCACGTATTACTGGTACACTCGAAGATGTTTACCGTAAGACCCAACCAAAAATGGGTTACAGACAGTCTTCGGAACAAACTGATAGTAATAATCCCTCGAATAGTAGCCCTAATTCATCATCAAACAGCGAAAATCAATCTCCTAGAAAGCTTATTTCACTTAAGCATGAACAGTCGAGTAATAGTAGCTCGACAGATTCTGACTCAAGTCAACATGAAACTAATCATTCAACCGGTGAGGTTAAACG TCG TCAC AGTGAGGCTATCC GAAATGAACGACAAG TGAGTAATATGAAATCTC AAAAACGG ACGT CACAGTCACTCCATCCATCCAAAAGTGTGAATATAGGTAAGGCTTAGTCCCTCCGTTGAGTTTTGGAACTACTAATGAAATTGTCACAGCTCC CTCTAACAATTAAGTAAACTGCTATCCATACAAATCATTCAGTACTTTGTATCTACGCCCTTGAGGTTTCATGACAGATCAACTTTTTGTCTTCTTGAGTATTGATTTAATTACA ] [-] EMBL CD077095 [ gaAGTTTAAACGTTTGTTCACAATTAAGGTTATCCGGAAATGAACGACAAGTTGAGTAATATGAAATCTCAAAAAACGGTACGTGCATAGTCACTCCATCCATCCAAAAGTGTGAATATAGGTAAGGCTTAGTCCCTCCGTTGAGTTTTGGAACTACTAATGAAATTGTCACAGCTCC CTCTAACAATTAAGTAAACTGCTATCCATACAAATCATTCAGTACTTTGTATCTACGCCCTTGAGGTTTCATGACAGATCAACTTTTTGTCTTCTTGAGTATTGATTTAATTACATCTGAACCTGTGTGTACACTTTCCGTTTAGGTCAAGTAACATCAGTCTACAAAGCGCTGAGTGTAATTTTCAGCTGTATTTTTAAACCTTGTACATTTTGGCAATAAtt ] [-] EMBL CD062763 [ GAGTAATATGAAATCTC AAAAACGA GCGT CACAGTCACTCCATCCATCCAAAAGTGTGAATATAGGTAAGGCTTAGTCCCTCCGTTGAGTTTTGGAACTACTAATGAAATTGTCTCAGCTCCTCTATAACAATTAAGTAGCCTGCTATCCATGCAAATCATTCAGTACTTTGTATCTACGCCCTTGAGGTTTCATGACAGATCAACTTTTTGTCTTCTTGAGTATTGATTTAATTACATCTGAACCTGTGTGTACACTTTCCGTTTAGGTCAAGTAACATCAGTCTACAAAGCGCTGAGTGTAATTTTCAGCTGTATTTTTAAACCTTGTACATTTCGGCGTTGTTTGGGGATC] [-] EMBL SMW735 [ CTGCTANCCATACAAATCATTCAGTACTTTGTATCTACGCCCTTGAGGTTTCATGACAGNNCAACTTTTTGTCTTCTTGAGTATTGATTTAATTACATCTGAACCTGTGTGTACACTTTCCGTTTAGGTCAAGTAACATCAGTCTACAAAGCGCTGAGTGTAATTTTCAGCTGTATTTTTANACCTTGTACATTTTGGCAATAAATT ] [-] EMBL SMT14501 [ TACGCCCTTGNGGTTTCATGACAGNTCAACTTTTTGTCNTCTTGAGTATTGATTTAATTACATCTGAACCTGTGTGTACACTTTCCGTTTNGGTCAAGTNACATCAGTCTACAAAGCGCTGAGTGTNATTTTCAGCTGTATTTTTAAACCTTGTACATTTTGGCAATAAATT ] [-] EMBL SMT14610 [ TGACAGANCAACNTTNTGTCNTCTTGAGTATTGATTTAATTACATCTGAACCTGTGTGTACACTTTCCGTTTAGGTCAAGTAACATCAGTCTACAAAGCGCTGAGTGTNATTTTCAGCTGTATTTTTAAACCTTGTACATTTTGGCAATAAATT ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||