cluster # 9872

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Schistosoma mansoni
cluster # 9872 cluster # 9872 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9872#0 length = 375 sequences # 11

consensus_9872#1 length = 151 sequences # 1

consensusID : consensus_9872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 375
fasta sequence

                              [CTACTGAGATATTGATGTGCTGAAATCAATTTT-CATCAGACACCATCCTCA-TTTCACTCAGATGACTAGTAGTAATCGGGATTCGGAAAGT-CACCGTCAATTTCGGGAGGTGGAGGAATTAAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTAGGGTT-CTTTGA-TTTCTCGGTATCGGCAACTGACT-CAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAACATCTTGATATATCTCATTTTCAGACTGATCTCTCTCACGTAAGATGAAGGAATCAGTGACACTGTTCTCCGA]

[+] EMBL CD159822             [CTACTGAGATATTGATGTGCTGAAATCAATTTT CATCAGACACCATCCTCA TTTCACCCAGATGACTAGTAGTTATCGGGATTCGGAAAAT CACCGTCAATTTCGGGAGGTGGTGGAATTAAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCCAATCTGGTTCATCACCCAATTTGACTTCGGTGATAGTAGGGTT CTTTGA GTTCCCGGTATCGGCAACTGACT CAACGAACTGAATCATTGTAAGTTGCACTGCAAGCAGCATGATCAACATCTTGATATATCTCATTTTCAGACTGATCGCTCTCATGTCAGATGAGGGAATCAGTGACACTGTTCTCtg ]
[+] EMBL CD159934             [ TACTGAGATATTGATGTGCTGAAATCAATTTT CATCAGACACCATCCTCA TTTCACTCAGATGACTAGTAGTAATCGGGATTCGGAAAGT CACCGTCAATTTCGGGAGGTGGAGGAATTAAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTAGGGTT CTTTGA TTTCTCGGTATCGGCAACTGACT CAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAACATCTTGATATATCTCATTTTCAGACTGATCTCTCTCACGTAAGATGAAGGAATCAGTGACACTGTTCTCCG ]
[+] EMBL CD159874             [ TACTGAGATATTGATGTGCTGAAGTCAATTTT CATCAGACGCCATCCTCA TTTCACTCAGATGACTAGTAGTAATCGGGATTCGGAAAGT CACCGTCAATTTCGGGAGGTGGAGGAATTAAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTAGGGTT CTTTGA TTTCTCGGTATCGGCAACTGACT CAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAACATCTTGATATATCTCATTTTCAGACTGATCTCTCTCACGTAAGATGAAGGAATCAGTGACACTGTTCTCCG ]
[+] EMBL CD159862             [ TACTGAGATATTGATGTGCTGAAATCAATTTT CATCAGACACCATCCTCA TTTCACTCAGATGACTAGTAGTAATCGGGATTCGGAAAGT CACCGTCAATTTCGGGAGGTGGAGGAATTAAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTAGGGTT CTTTGA TTTCTCGGTATCGGCAACTGACT CAGCGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAACATCTTGATATATCTCATTTTCAGACTGATCTCTCTCACGTAAGATGAAGGAATCAGTGACACTGTTCTCCG ]
[+] EMBL CD121441             [ TACTGAGATATTGATGTGCTGAAATCAATTTT CATCAGACACCATCCTCA TTTCACTCAGATGACTAGTAGTAATCGGGATTCGGAAAGT CACCGTCAATTTCGGGAGGTGGAGGAATTAAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTAGGGTT CTTTGA TTTCTCGGTATCGGCAACTGACT CAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAACATC                                                                     ]
[-] EMBL CD159926             [  ACTGAGATATTGATGTGCTGAAATCAATTTT CATCAGACACCATCCTCA TTTCACTCAGATGACTAGTAGTAATCGGGATTCGGAAAGT CACCGTCAATTTCGGGAGGTGGAGGAATTANACAAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTAGGGTT CTTTGA TTTCTCGGTATCGGCAACTGACT CAACGAGCTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAACATCTTGATATATCACATTTTCAGACTGATCTCTCTCACGTAAGATGAAGGAATCAGTGACACTGTTCTCCGA]
[-] EMBL CD159940             [  ACTGAGATATTGATGTGCTGAAATCAATTTT CATCAGACACCATCCTCA TTTCACTCAGATGACTAGTAGTAATCGGGATTCGGAAAGT CACCGTCAATTTCGGGAGGTGGAGGAATTAAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCAAATCTGGTTCAGCACCCAATTTGACTTCGGCGACAGTAGGGTT CTTTGA TTTCTCGGTATCGGCAACTGACT CAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAACATCTTGATATATCTCATTT                                                     ]
[-] EMBL SM6541               [    TGAGATATTGATGTGCTGAAATCAATTTTCCATCAGACACCATCCTCA TTTCACCCAGATGACTAGTAGTTATCGGGATTCGGAAAATCCACCGTCAATTTCGGGAGGTGGAGGAATTAAACGAGGATCATCTGGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCCAATCTGGTTCATCACCCAATTTGACTTCGGTGACAGTAGGGTTNCTTTGA GTTCTCGGTATCGNCAACTGACTCCACCGAACTGAATGATTGTAAGGTGCACTNCAAACAGCATGATCAGCATCTTGATATATCTCATTTTCAGACTGATCGCTCTCACGTAAG                             ]
[-] EMBL SM757                [                                            CATCCTCATTTTCACCCAGATGACTAGTAGTTATCGGGATTCGGAAAAT CACCGTCAATTTCGGGAGGTGGAGGAATTAAACGAGGATCATCTGGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGGTTCCAATCTGGTTCATCACCCAATTTGACTTCGGTGACAGTAGGGTTCCTTTGAGTTNCTCGGTATCGGCAACTGACT CAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAGCATCTTGATATATCTCATTTTCAGACTGATCGCTCTCAC                                  ]
[-] EMBL CD159717             [                                             ATCCTCA TTTCTCTCAGATGACTAGTAGTAATCGGGATTCGGAAAGT CACCGTCAATTTCGGGAGGTGGAGGAATTAAACGAGGATCATATTGATTGGGGCGATGACCGTCAACTTCGACACCAATTGGAATTTGGTTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTAGGGTT CTTTGA TTTCTCGGTATCGGCAACTGACT CAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAACATCTTGATATATCTCATTTTCAGACTGATCTCTCTCACGTAAGATGAAGGAATCAGTGACACTGTTCTCCGA]
[+] EMBL BG931741             [                                                                                   TTCGGAAAGT CACCGTCAATTTCGGGAGGTGGAGGAATGAAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATGTGGTTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTACGGTT CTTTGA TTTCTCGGTATCGGCATCTGACT CAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATCAACATCTTGATATATCTCATTTTCAGACTGATCTCTCTCACGTAAGATG                          ]




>consensus_9872#0
CTACTGAGATATTGATGTGCTGAAATCAATTTTCATCAGACACCATCCTCATTTCACTCA
GATGACTAGTAGTAATCGGGATTCGGAAAGTCACCGTCAATTTCGGGAGGTGGAGGAATT
AAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGG
TTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTAGGGTTCTTTGATTTCTCG
GTATCGGCAACTGACTCAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATC
AACATCTTGATATATCTCATTTTCAGACTGATCTCTCTCACGTAAGATGAAGGAATCAGT
GACACTGTTCTCCGA

consensusID : consensus_9872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 151
fasta sequence

                              [TGTTCCTGGATTCCCGGTATCAGCACCTGACTCAACGAACTGAATCATTGTAAGGTGTACTGCAAACAGCATGATGAGCATCATGATAAATCTCATTTTCAGACTGATCGCTCTCACGTAAGATGAAGCAATCGGTGACACTCTTCTCCGA]

[-] EMBL CD097985             [TGTTCCTGGATTCCCGGTATCAGCACCTGACTCAACGAACTGAATCATTGTAAGGTGTACTGCAAACAGCATGATGAGCATCATGATAAATCTCATTTTCAGACTGATCGCTCTCACGTAAGATGAAGCAATCGGTGACACTCTTCTCCGA]




>consensus_9872#1
TGTTCCTGGATTCCCGGTATCAGCACCTGACTCAACGAACTGAATCATTGTAAGGTGTAC
TGCAAACAGCATGATGAGCATCATGATAAATCTCATTTTCAGACTGATCGCTCTCACGTA
AGATGAAGCAATCGGTGACACTCTTCTCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9872#0      CTACTGAGATATTGATGTGCTGAAATCAATTTTCATCAGACACCATCCTCATTTCACTCA 60
consensus_9872#1      ------------------------------------------------------------
                                                                                  

consensus_9872#0      GATGACTAGTAGTAATCGGGATTCGGAAAGTCACCGTCAATTTCGGGAGGTGGAGGAATT 120
consensus_9872#1      ------------------------------------------------------------
                                                                                  

consensus_9872#0      AAACGAGGATCATATTGATTGGGGCGATGATCGTCAACTTCGACACCAATTGGAATTTGG 180
consensus_9872#1      ------------------------------------------------------------
                                                                                  

consensus_9872#0      TTCAAATCTGGTTCAACACCCAATTTGACTTCGGCGACAGTAGGGTTCTTTGATTTCTCG 240
consensus_9872#1      -------------------------------------------TGTTCCTGGATT-CCCG 16
                                                                  **** * **** * **

consensus_9872#0      GTATCGGCAACTGACTCAACGAACTGAATGATTGTAAGGTGCACTGCAAACAGCATGATC 300
consensus_9872#1      GTATCAGCACCTGACTCAACGAACTGAATCATTGTAAGGTGTACTGCAAACAGCATGATG 76
                      ***** *** ******************* *********** ***************** 

consensus_9872#0      AACATCTTGATATATCTCATTTTCAGACTGATCTCTCTCACGTAAGATGAAGGAATCAGT 360
consensus_9872#1      AGCATCATGATAAATCTCATTTTCAGACTGATCGCTCTCACGTAAGATGAAGCAATCGGT 136
                      * **** ***** ******************** ****************** **** **

consensus_9872#0      GACACTGTTCTCCGA 375
consensus_9872#1      GACACTCTTCTCCGA 151
                      ****** ********