These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9876#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1169 fasta sequence [TGTTTATATCCAGATGATATCATAAGAATGATTTAATTCTATGCATTTATATCATTACAAAAGGTGACAATTATTCATTTATTGTCTGTTATTTGATAATACCCTCTATGTGGTTGATCTGCTGATGATGAAGAAAAAGAAGGATGCTGTACATTATAGTAGATACATTAGACATGTTGCTTGATGAATGTCATATATATATGAAGAATACAGATATATGAAAAAGAGGAGGAAAAGAACCAATCATCACAGATCCTTTTTTATTCCAACGAAATGAATTATTTCATTTTGATTGTAAATAGATAATACCAACAGAATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAACTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGTATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGTGTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCGTCAATGAACACTGATTTAAAAAATACCGATCCTTCCTCTCCTAATTCCACTTCAGCCACTGCTGATCCGTCTACTTCTAAATCGAATCCATCAGATTGTTTGAGGCCTGAAAATGACTCCTCACTATCGTCAATTTCTTCATCTACAGCTACTGCGTCTACGGCAACAGTCGGTGCATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATCTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTNTTCTTCATATATATATGACATTCATCAAGCAACATGTCTAATGTANTCTACTATATGTTCAGCCTCCTTCTTTTT] [+] EMBL CD147150 [TGTTTATATCCAGATGATATCATAAGAATGATTTAATTCTATGCATTTATATCATTACAAAAGGTGACAATTATTCATTTATTGTCTGTTATTTGATAATACCCTCTATGTGGTTGATCTGCTGATGATGAAGAAAAAGAAGGATGCTGTACATTATAGTAGATACATTAGACATGTTGCTTGATGAATGTCATATATATATGAAGAATACAGATATATGAAAAAGAGGAGGAAAAGAACCAATCATCACAGATCCTTTTTTATTCCAACGAAATGAATTATTTCATTTTGATTGTAAATAGATAATACCAACAGAATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAACTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGTATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGT ] [+] EMBL CD147192 [TGTTTATATCCAGATGATATCATAAGAATGATTTAATTCTATGCATTTATATCATTACAAAGGGTGACAATTATTCATTTATTGTCTGTTATTTGATAATACCCTCTATGTGGTTGATCTGCTGATGATGAAGAAAAAGAAGGATGCTGTACATTATAGTAGATACATTAGACATGTTGCTTGATGAATGTCATATATATATGAAGAATACAGATATATGAAAAAGAGGAGGAAAAGAACCAATCATCACAGATCCTTTTTTATTCCAACGAAATGAATTATTTCATTTTGATTGTAAATAGATAATACCAACAGTATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAACTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGTATGAC ] [+] EMBL CD066794 [ ccgcaaCAACAGAATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAACTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGTATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGTGTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCGTCAATGAACACTGATTTAAAAAATACCGATCCTT ] [-] EMBL CD066684 [ cgcaacacaAGAATTTGATTATAGACGCATGGGGAGTTGTTGAGTTACACCACCATCTGTCTAATGTTACACATGATAACCATCGTATCGGTCAGAATGTTACATTTAATATACTTAATCCAGATAATGTAACTTGTTATTATTTACCAAATCGGCATCATTTACCTAATATATGTATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGTGTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCGTCAATGAACACTGATTTAAAAAATACCGATCCTTCC ] [+] EMBL CD168836 [ cTGGAAAAAGACAAAACGCTAATATTATTGGAACTGATCCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGTGTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCGTCAATGAACACTGATTTAAAAAATACCGATCCTTCCTCTCCTAATTCCACTTCAGCCACTGCTGATCCGTCTACTTCTAAATCGAATCCATCAGATTGTTTGAGGCCTGAAAATGACTCCTCACTATCGTCAATTTCTTCATCTACAGCTACTGCGTCTACGGCAACAGTCGGTGCATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATCTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCAT ] [+] EMBL CD177960 [ ACTTCTAAATCGAATCCATCAGATTGTTTGAGGCCTGAAAATGACTCCTCACTATCGTCAATTTCTTCATCTACAGCTACTGCGTCTACGGCAACAGTCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATCTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTNTTCTTCATATATATATGACATTCATCAAGCAACATGTCTAATGTANTCTACTATATGTTCAGCCTCCTTCTTTTT] consensusID : consensus_9876#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 411 fasta sequence [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATATATATATGACA-TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTTCTCATCATCAGCAGATCACCCACATAGACGGAA] [+] EMBL CD119536 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAGTGAAATAATTCATTTCGTTGGAATAGAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATGTATCTGTATTCTTCATATATATATGACA TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCCCTTTTCTCATCATCAGCAGATC ] [+] EMBL CD119532 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATATATATATGACATTTCATC AGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTTCTCATCATCAGCAG ] [+] EMBL CD119592 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATATATATATGACA TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTCTTCATCATCAGCAG ] [+] EMBL CD119321 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGNATNCTTCATATATATATGACA TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTTCTCATCATCAGCA ] [+] EMBL CD119582 [TCGGTGTATCACAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCACACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCAGCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTTCTCATATATATATGACA TTCATCAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCTTTCTTTTTCTTCATCATCAGCA ] [-] EMBL CD119425 [ GCGNAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTTAAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAAAAAGGATCTGTGA AAAAGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATATATATATGACA TTCAACAAGCAACATGTCTAATGTATCTACTATAATGTACAGCATCCTTCTTTTTCTTCATCATCAGCAGATCACCCACATAGACGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9876#0 TGTTTATATCCAGATGATATCATAAGAATGATTTAATTCTATGCATTTATATCATTACAA 60 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 AAGGTGACAATTATTCATTTATTGTCTGTTATTTGATAATACCCTCTATGTGGTTGATCT 120 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 GCTGATGATGAAGAAAAAGAAGGATGCTGTACATTATAGTAGATACATTAGACATGTTGC 180 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 TTGATGAATGTCATATATATATGAAGAATACAGATATATGAAAAAGAGGAGGAAAAGAAC 240 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 CAATCATCACAGATCCTTTTTTATTCCAACGAAATGAATTATTTCATTTTGATTGTAAAT 300 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 AGATAATACCAACAGAATTTGATTATAGATGCATCTGCTGTTGTTGAGTTAGACAAACAA 360 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 CTGTCTAATGTTACACATGATAAACCTCGTTTCGGTCAGAATGTTACATTTAATATACTT 420 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 AATCCAGATAATGTAACTTGTTATTCTTTACCAAATCGGCATCATTTACCTAATCTATGT 480 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 ATGACCACTGATACTCCCTCAGATGAAAACAGACAAAACGCTAATATTATTGGAACTGAT 540 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 CCTAGTGTTAAGTATTGTAATTATGGTAAAAAGTCTTATGATTATTTTGCTACAGATAGT 600 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 GTTCTTTTAGTACGATCATCTAGACGACGTAGAATTAGACCTGATTTACAAGTGTTACCG 660 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 TCAATGAACACTGATTTAAAAAATACCGATCCTTCCTCTCCTAATTCCACTTCAGCCACT 720 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 GCTGATCCGTCTACTTCTAAATCGAATCCATCAGATTGTTTGAGGCCTGAAAATGACTCC 780 consensus_9876#1 ------------------------------------------------------------ consensus_9876#0 TCACTATCGTCAATTTCTTCATCTACAGCTACTGCGTCTACGGCAACAGTCGGTGCATCA 840 consensus_9876#1 -------------------------------------------------TCGGTGTATCA 11 ****** **** consensus_9876#0 CAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCA 900 consensus_9876#1 CAAATAATGTCTAAGAGTGGTATACCAATGGATTATTATTATTCATCAGGCTATCAGTCA 71 ************************************************************ consensus_9876#0 CACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCA 960 consensus_9876#1 CACTCGAGACAATCAAGTCTTGAATCACAACCTGTTGGTTCTAGTCCACCATCATTATCA 131 ************************************************************ consensus_9876#0 GCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTAT-------------------- 1000 consensus_9876#1 GCGGAAGTATGTACACAGACTCAGTAACTGTTGGTATTATGTAATTCAGAGAAAGTTCTT 191 **************************************** consensus_9876#0 -----------------CTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAA 1043 consensus_9876#1 AAAGTACTTAGACGACACTATTTACAATCAAAATGAAATAATTCATTTCGTTGGAATAAA 251 ******************************************* consensus_9876#0 AAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTNTTCTTCATA 1103 consensus_9876#1 AAAGGATCTGTGATGATTGGTTCTTTTCCTCCTCTTTTTCATATATCTGTATTCTTCATA 311 ************************************************** ********* consensus_9876#0 TATATATGACATTCATCAAGCAACATGTCTAATGTANTCTACTATA-TGTTCAGCCTCCT 1162 consensus_9876#1 TATATATGACATTCATCAAGCAACATGTCTAATGTAT-CTACTATAATGTACAGCATCCT 370 ************************************ ******** *** **** **** consensus_9876#0 TCTTTTT---------------------------------- 1169 consensus_9876#1 TCTTTTTTCTCATCATCAGCAGATCACCCACATAGACGGAA 411 ******* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||