These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 972 fasta sequence [GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCTGCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA-AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAA-AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGCAGTTTTGCGTNCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTCACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGAAACCTCGTCTTTACCAAAACAATTTTGTGGACCNTCACTCACATTGGGCTTCAATTTNCCNTATTATNCTGT] [+] EMBL CD161788 [GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTACGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTT ] [+] EMBL CD190366 [GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCGTCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGANAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTA ] [+] EMBL CD161954 [GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGT ] [+] EMBL CD160462 [ CTTTGTTGTCTTTGCTGGAAGAACGTAATTTAGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATACTTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAATGATTACCTTTCGAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCTGCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTA ] [+] EMBL CD126039 [ TTCA G TTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAG TTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCTGCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGATAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAA AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAAACATTTTACTGATATTGA ] [-] EMBL CD126138 [ TCATGCTTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTTGTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCATGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCTGCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAATAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGA ] [-] EMBL CD162635 [ GCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGACCATGCAA AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTAC ] [-] EMBL CD162651 [ AGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAA AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTAC ] [-] EMBL CD066702 [ GGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAACCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCTTGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGA AACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCATGCAA AAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGCA ] [-] EMBL CD130758 [ TTTTATCATGGAAAGAAGAAGTGAATCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTTAGANAACAGCAGAGGAAGAAGcc ] [-] EMBL SMT14572 [ GAAAACTCAGAAGCNTCTAAATCNCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAANTCAGCAGTTTTGCGTNCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTCACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGAAACCTCGTCTTTACCAAAACAATTTTGTGGACCNTCACTCACATTGGGCTTCAATTTNCCNTATTATNCTGT] consensusID : consensus_9883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [GAGGCGGCACGAGGCGTAAATCTGATGCGAATGAAGATCATGCAAAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGCAGTTTTGCGTTCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTCACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGAAACCTCGTCTTTACCAAAACAANTTTGTGGACCTTCACTCACATTGNGCTTCAAATTTCCTTATATACCTGTAT] [+] EMBL CD077670 [GAGGCGGCACGAGGCGTAAATCTGATGCGAATGAAGATCATGCAAAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCCCAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGCAGTTTTGCGTTCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTCACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGAAACCTCGTCTTTACCAAAACAANTTTGTGGACCTTCACTCACATTGNGCTTCAAATTTCCTTATATACCTGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9883#0 GGTCCCAGAAGGGAGTCAAACAAACAAAGCTTTGTTGTCTTTGCTGGAAGAACGTAATTT 60 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 AGATTTTCTCGTCCCAAGCTTACGATTGTCGACGGAACTATCTCATCTTATTATGGATAC 120 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 TTCATCTTTAGAAGGGAAGTGTCCAGAAGAGTCTGACAAAATCACAGCTTCTAAATTCAA 180 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 TGATTACCTTTCAAACCATCCAATTGATGCCAGGATACGAGCATCAGACTACATTCATGC 240 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 TTGCTTGCCGGTCATTTATGAATATATTTATAGAGTAGGAATTGTTGATCTTGGCAGTTT 300 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 GTCTTCTCCCCCCACTTTAATGGCTAGAGAAAAAGCTGCGTGGGAGTGCATAGTACCTCA 360 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 TGTACTTATCGAAGTTTTAAGAAGCTCAACAGACCGACAGTTGGATGCTCTTCATGACCT 420 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 GCAGTTCTTCTGGGTTGATAAAAATATGCCTAAAGGGTTTTTGTTTCGTTGTTTTATGAA 480 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 CCTTTATAATTGTGAGCTTATATGTGAAGATGCATTTTTATCATGGAAAGAAGAAGTGAA 540 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 TCCCAGTTATCCTGCTAAAGGTCAAGCATTATTTGAGGTCAATCGCTGGTTAACCTGGTT 600 consensus_9883#1 ------------------------------------------------------------ consensus_9883#0 AGAAACAGCAGAGGAAGAAGACGAAGAAGACCGACGTAAATCTGATGCGAATGAAGATCA 660 consensus_9883#1 -----------------GAGGCGGCACGA---GGCGTAAATCTGATGCGAATGAAGATCA 40 ** ** * ************************** consensus_9883#0 TGCAAAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCC 720 consensus_9883#1 TGCAAAAATAGTTCAAGAAAGTTCAGTGGATTCGGAAAACTCAGAAGCTTCTAAATCTCC 100 ************************************************************ consensus_9883#0 CAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGC 780 consensus_9883#1 CAACCATTTTACTGATATTGAGTCTCATATTATGCCGCCAGCCCTGCATCCCAATTCAGC 160 ************************************************************ consensus_9883#0 AGTTTTGCGTNCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTC 840 consensus_9883#1 AGTTTTGCGTTCCTGAATGACCTTTTCAGTTTCTGAACTTGACATCAGTTTTGTGTGTTC 220 ********** ************************************************* consensus_9883#0 ACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGA 900 consensus_9883#1 ACATGATAATGATGCCTGTAAATCCTAGATTGTATGTCTGGTATGGAAAATCGGTTTTGA 280 ************************************************************ consensus_9883#0 AACCTCGTCTTTACCAAAACAATTTTGTGGACCNTCACTCACATTGGGCTTCAATTTNCC 960 consensus_9883#1 AACCTCGTCTTTACCAAAACAANTTTGTGGACCTTCACTCACATTGNGCTTCAAATTTCC 340 ********************** ********** ************ ******* ** ** consensus_9883#0 NTATTATNCTGT-- 972 consensus_9883#1 TTATATACCTGTAT 354 *** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||