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Schistosoma mansoni
cluster # 9887 cluster # 9887       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9887#0 length = 1116 sequences # 9  
consensus_9887#1 length = 555 sequences # 3  

consensusID : consensus_9887#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1116
fasta sequence
                              [ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGTAGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAATCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGTTATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAATGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]

[-] EMBL CD069422             [ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTCCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD069493             [                                                        gTGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGTAGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD131045             [                                                         TGGTGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCACGAAATGAATCCTGACTACCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AI068194             [                                                                                                                                                                                                                                                                                                                                                ACCTCTACCTCCATTATTTAATTTGACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAACATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGTAGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAATCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGTTATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAATGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTANATGACAATCATCACAACACAGAATTATAGTAAA                                                                                                           ]
[-] EMBL CD195318             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAATGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAGATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCCGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]
[-] EMBL CD195383             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTTAGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]
[-] EMBL CD195144             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTCTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCGCATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]
[-] EMBL CD195122             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTCTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCGCATTCACAACTTAATAATCATTTCTCGTGTAATTTCC]
[-] EMBL CD195154             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAATTTATTCACCATATTTGTCNTACAGTGACATNTGTTAAATTTCAAAATTCAACATCACGAAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAAGTACTAATTATATACATGTACAAATGTTTATCAACAAAATAATATCTCTTAAGATTAATGTAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTG                                                     ]


>consensus_9887#0 ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGG TGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCA CGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTC AAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGA CTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGA GTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTT GACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAAC ATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGT AGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAA TCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGT TATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAA TGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTT AGAATCCAGGAATATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAAA TTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACGA AACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGACAA GTACTAATTATATACATGTACAAATGTTTAACAACAAAATAATATCTCTTAAGATTAATG TAGCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTAAAGTAAT TTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATACTCTCAC ATTCACAACTTAATAATCATTTCTCGTGTAATTTCC



consensusID : consensus_9887#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 555
fasta sequence
                              [GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTTCGAAGTTTGGCCTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTACTTTTAAATCCAGCTACAGCTGTTTTAAAATTATGCGATTTCGGAAGTGCGAAGGTTCTAGTTCGCGGCGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGGCTGTGTACTTGCTGAACTTTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTGTAGACCAGCTTGTTGAAATTATCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAA]

[+] EMBL CD195418             [GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTTCGAAGTTTGGCCTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTACTTTTAAATCCAGCTACAGCTGTTTTAAAATTATGCGATTTCGGAAGTGCGAAGGTTCTAGTTCGCGGCGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGG                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD129715             [                                                                                                                                                                                   GCGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGGCTGTGTACTTGCTGAACTTTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTGTAGACCAGCTTGTTGAAATTATCAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTTGACACCCTACGAAA]
[-] EMBL CD179642             [                                                                                                                                                                                                                                                                                                                                                                                                               AGTTGGTGTCACAGCTACTCGACTACACACCGTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGAGTTAAGACAAGAACCCACTAG                                                     ]


>consensus_9887#1 GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTTCGAAGTTTGGC CTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTACTTTTAAA TCCAGCTACAGCTGTTTTAAAATTATGCGATTTCGGAAGTGCGAAGGTTCTAGTTCGCGG CGAACCTAACGTTTCTTACATTTGTTCCCGTTATTACCGGGCTCCTGAATTGATATTTGG TGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAGCTGGCTGTGTACTTGCTGAACT TTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTGTAGACCAGCTTGTTGAAATTAT CAAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCG ACTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATG AGTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATT TGACACCCTACGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9887#0      ACCTGGCTGTGTACTTGCTGAACTTTTGTTAGCTCACCCAATTTTTCCTGGAGAAACTGG 60
consensus_9887#1      ------------------------------------------------------------
                                                                                  

consensus_9887#0      TGTAGACCAGCTTGTTGAAATTATCAAGGTTTTAGGTACTCCTTCCCGCGAACAAATTCA 120
consensus_9887#1      ------------------------------------------------------------
                                                                                  

consensus_9887#0      CGAAATGAATCCTGACTATCGAGAATTTAAATTTCCACAGATTAAACCCCATCTCTGGTC 180
consensus_9887#1      ------------------------------------------------------------
                                                                                  

consensus_9887#0      AAAAGTTTTTCGTCCTCGTGTTCCATCAGAAGCGATTCAGTTGGTGTCACAGCTACTCGA 240
consensus_9887#1      ------------------------------------------------------------
                                                                                  

consensus_9887#0      CTACACACCCTCAAAACGATTAGAACCGTTAGATGCTTGTTTACACTGCTTTTTTGATGA 300
consensus_9887#1      ------------------------------------------------------------
                                                                                  

consensus_9887#0      GTTAAGACAAGAAGGAACTAGACTTCCCAATGACAGACCTCTACCTCCATTATTTAATTT 360
consensus_9887#1      ------------------------------------------------------------
                                                                                  

consensus_9887#0      GACACCCTACGAAATGACTATGCGAGATGATATGTACAAATTTCTCCCACCTTCTCGAAC 420
consensus_9887#1      ------------------------------------------------------------
                                                                                  

consensus_9887#0      ATCCGGGGGAGGTGGGGTATCAGAGTCAAGTTTACCACCTACTTCAGATCTTTTAATGGT 480
consensus_9887#1      ------------------------------------------------------------
                                                                                  

consensus_9887#0      AGAACAACCACAACCGCATCATATAACAGATACTGTATGTATTGATCGCACAGGACAAAA 540
consensus_9887#1      --GGAAACAATCCCTCTTTTGTTTGTAAAGCTTTATATGTACCAACTTTTT----CGAAG 54
                           *** *   *    *  * *   *     * ******   *          * ** 

consensus_9887#0      TCACAATCCCTCTACATCAGAAGGGAGTAAATTATCGGATTCAGAAATTCGATTAGCGGT 600
consensus_9887#1      TT-TGGCCTACATACATCATAAAGGCATTTGTCATCGGGATATAAAACCCCAAAATTTAC 113
                      *      *    ******* ** **  *   * *****  *   ***  * *  *     

consensus_9887#0      TATTGCTCCATCTCATAGTTCGGATAACATACGTCTCACATCAAATAACAGTAACAACAA 660
consensus_9887#1      TTTTAAATCCAGCTACAGCTGTTTTAAAAT-TATGCGATTTCGGA----AGTGCGAAGGT 168
                      * **    *     * ** *    *** **   *   *  **  *    ***   **   

consensus_9887#0      TGATAATAGCAGCAATATTGATATACCTCAACAATTGAAAGATTCCTGCCATGAAGAGTT 720
consensus_9887#1      TCTAGTTCGCGGCGAACCTAACGTTTCTTA-CATTTG-----TTCCCGTTATTA----CC 218
                      *     * ** ** *   * *  *  ** * ** ***     **** *  ** *      

consensus_9887#0      AGAATCCAGGAAT-ATTCAAGGTGTCAATAGTTAAATATAATTATCTGTCCATCTATAAA 779
consensus_9887#1      GGGCTCCTGAATTGATATTTGGTGCTGTGGATTACACATGTCAGATTGATGTTTGGTCAG 278
                       *  *** * * * **    ****       *** * **       **    *   * * 

consensus_9887#0      ATTTATTCACCATATTTGTCCTACAGTGACATTTGTTAAATTTCAAAATTCAACATCACG 839
consensus_9887#1      CTGGCTGTGTACTTGCTGAACTTTTGTTAGGTCAGCCAATTTTTCCTGGAGAAAGTGGTG 338
                       *   *      *   **  **   ** *  *  *  ** ***        **  *   *

consensus_9887#0      -AAACAAGGATGAAAAACCATTCGACTCAGGTTTCTCGTCCTGTTTATTCCTCCTGAGAC 898
consensus_9887#1      TAGACCAGCTTGTTGAAATTATCAA---AAGTTTTTCGTCCT-CGTGTTCCATCAGAAGC 394
                       * ** **  **   **    ** *   * **** *******   * ****  * **  *

consensus_9887#0      AAGT--ACTAATTATATACATGTACAAATGTTTAACAACAAAATAAT--ATCTCTTAAGA 954
consensus_9887#1      GATTCAGTTGGTGTCACAGCTACTCGACTACACACCCTCAAAACGATTAGAACCGTTAGA 454
                       * *    *  *   * *  *   * * *    * *  *****  **      * * ***

consensus_9887#0      TTAATGTA-GCTCCTCCCTGTAGATGACAATCATCACAACACAGAATTATAGTAAAAGTA 1013
consensus_9887#1      TGCTTGTTTACACTGCTTTTTTGATGA--GTTAAGACAAGAAGGAACTAGACTTCCCAAT 512
                      *   ***   * *  *  * * *****   * *  **** *  *** ** * *       

consensus_9887#0      AAGTAATTTATTTTATTCCTATTTTAGGATTTCACTTATTTTCACTTTTGTACAAACATA 1073
consensus_9887#1      GACAGAC---CTCTACCTCCATTATTTAATTTGACACCCTACGAAA-------------- 555
                       *   *     * **   * *** *   **** **    *   *                

consensus_9887#0      CTCTCACATTCACAACTTAATAATCATTTCTCGTGTAATTTCC 1116
consensus_9887#1      -------------------------------------------
                                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)