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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9892#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 906 fasta sequence
[CANGCCAGAATTCTGCACGAGGCTGCAGAGTATCTTTTAAATCCTAACGAATTATCTGTCCTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGCGTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTA-TCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCCAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTAAAACAATTGATGCTAAAAATAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAA-CGTTCAGAATT-TAAAAGCTTAATTTTAATGTTAAACATTTT--TTGCGTTATTAATTAATTTTACCCTTCATGTACTATCATATTGACTA-CCTGAAGTAGAAACT-TTGTTCTCAATCTTCAATACTGAAATGTTTCTTCTTTTTAAACGAGGTTACGCATTTCTGATTTTCCATCTTCACTTAATCATTAACTCAGAA]
[+] EMBL CD079565 [CANGCCAGAATTCTGCACGAGGCTGCAGAGTATCTTTTAAATCCTAACGAATTATCTGTCCTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGCGTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTA TCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCCAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAAGTGACTTATGCAATGCATTAAAACAATTGATGCTAAAAATAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTNTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAANCG TCAGAATTNAAAAAGC TAATTNTAATGGTAANCATTNTNNTTGCG TATTAANTAANTNTACCCTNCATGTACTATCATATTGACTACCCTG AGTAGAAACTNNTG TCTCAATCTTCAATACTGAAATGnt ]
[-] EMBL CD073831 [ ACTATTCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCCAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTAAAACAATTGATGCTAAAAATAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAA CGTTCAGAATT TAAAAGCTTAATTTTAATGTTAAACATTTT TTGCGTTATTAATTAATTTTACCCTTCATGTACTATCATATTGACTA CCTGAAGTAGAAACT TTGTTCTCAATCTTCAAAAATGAAATGTTT ]
[-] EMBL CD076281 [ CAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTAAAACAATTGATGCTAAAAATAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAA CGTTCAGAATT TAAAAGCTTAATTTTAATGTTAAACATTTT TTGCGTTATTAATTAATTTTACCCTTCATGTACTATCATATTGACTA CCTGAAGTAGAAACT TTGTTCTCAATCTTCAATACTGAAATGTTTCTTCTTTTTAAACGAGGTTACGCATTTCTGATTTTCCATCTTCACTTAATCATTAACTCAGAA]
[-] EMBL CD177763 [ TTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACC ]
[-] EMBL CD171526 [ TTAGTTCTGATGACGATCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTATTGTTCCCTAGAGGGCGTTCACATACAGTCAACGAAATTATAGCAATGCATCAAGAAGCTTACGATATGCGAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACC ]
[+] EMBL AI764816 [ AGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCTTGATTCCAAA CGTTCAGAATT TAAAAGCTTAATTTTAATGTTAAACATTTT TTGCGTTATTAATTAATTTTACCCTTCATGTACTATCATATTGACTA CCTGAAGTAGAAACT TTGTTCTCAATCTTCAATACTGAAATGTTTCTTCTTTTTAAACGGGGTTACGCATTTCTGATTTGCCATC TCACTTAATCATTAACTCA ]
[+] EMBL BG932169 [ gcagtgTCCAAAACCATATAACAGTTTGAGCGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATCTCTTTCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCc ]
consensusID : consensus_9892#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 820 fasta sequence
[AAGCTGAATGATACATCTTTATATCAAACCGATATTTGTAGGTGTTGGTAGTCTGTATATGCGTCCTGTTTCGAATTATGTCTTGGGTATCTGGGATCGGAAAAGCAATCCATTTATAATCGTCAACTTGTGAGTCAGGTCTTATTTTAAGTGTTTATCAAGTCGGACTTACGTTGGAAACTTCTTGGTTCTGTACGCGAAGCTGACTCTAGCCATTTAAATAATACGGACTCTGTTAAATGGCTTTTAGCATAGCATACATAGACAATTCAATACACACTTAACTAAACACCAACTATTTAATGTGTAACCTCCACAAATACCAGCTAAAATGATTCTTAGTATGAATATATTTGTGGCATTTTCATTGTTATTAAAAATACTTGCTGTTTCTACACCATCGGCTTCAACAATAGTACCTTATTTGGGTTACTTTTATTGTTTAAATATGACACTGCCTAGTTTGTCGACATTTGCTTCCACAATTGTTGTCCATTTACACTTTCAACGAGTAAAATCAAAACACGTACCACCATGGCTTATAAAGGTGGTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGCGTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAATCCGCAGTCAAATTCAATCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGATTTCATCCCCTGAAGAGTATCTTTTAAATCCT]
[+] EMBL CD068252 [AAGCTGAATGATACATCTTTATATCAAACCGATATTTGTAGGTGTTGGTAGTCTGTATATGCGTCCTGTTTCGAATTATGTCTTGGGTATCTGGGATCGGAAAAGCAATCCATTTATAATCGTCAACTTGTGAGTCAGGTCTTATTTTAAGTGTTTATCAAGTCGGACTTACGTTGGAAACTTCTTGGTTCTGTACGCGAAGCTGACTCTAGCCATTTAAATAATACGGACTCTGTTAAATGGCTTTTAGCATAGCATACATAGACAATTCAATACACACTTAACTAAACACCAACTATTTAATGTGTAACCTCCACAAATACCAGCTAAAATGATTCTTAGTATGAATATATTTGTGGCATTTTCATTGTTATTAAAAATACTTGCTGTT ]
[+] EMBL CD154414 [ TATTT TG GCTACCTCCACAAATACCAGCTAAAATGATTCTTAGTATGAATATATTTGTGGCATTTTCATTGTTATTAAAAATACTTGCTGTTTCTACACCATCGGCTTCAACAATAGTACCTTATTTGGGTTACTTTTATTGTTTAAATATGACACTGCCTAGTTTGTCGACATTTGCTTCCACAATTGTTGTCCATTTACACTTTCAACGAGTAAAATCAAAACACGTACCACCATGGCTTATAAAGGTGGTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGCGTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAATCCGCAGTCAAATTCAATCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGATTTCATCCCCTGAAGAGTATCTTTTAAATCCT]
[-] EMBL CD158916 [ TCATTGTTATTAAAAATACTTGCTGTTTCTACACCATCGGCTTCAACAATAGTACCTTATTTGGGTTACTTTTATTGTTTAAATATGACACTGCTTAGTTTGTCGACATTTGCTTCCACAATTGTTGTCCATTTACACTTTCAACGAGTAAAATCAAAACACGTACCACCATGGCTTATAAAGGTGGTCAGA TTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAA ]
consensusID : consensus_9892#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCTCGAGCCAANAATTCGGCACGAGGACACGTACCACCATGGCTTATAAAGGTGGTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGCGTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAATCCGCAGTCAAATTTAATCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGATTTCATCCCCTGAAGAGTATCTTTTAAATCCTAACGAATTATCTGTCCTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGCGTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTATCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCAAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTANAACAATTGATGCTA]
[+] EMBL CD082690 [CCTCGAGCCAANAATTCGGCACGAGGACACGTACCACCATGGCTTATAAAGGTGGTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGATGCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGCGTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAATCCGCAGTCAAATTTAATCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGATTTCATCCCCTGAAGAGTATCTTTTAAATCCTAACGAATTATCTGTCCTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGCGTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTATCTACAACATAAAAGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATACATGATAAAATGCTTAAAAAATTCAAACAATCTAAACAACAATCAAGAGGATCTACAATTAAACTTGAGTTCAATTTAGGTGACTTATGCAATGCATTANAACAATTGATGCTA]
consensusID : consensus_9892#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence
[TTCGGGCGAGGCCGCTAAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCA]
[+] EMBL BE431271 [TTCGGGCGAGGCCGCTAAAATCAAGCTGTTGCAAAGCAATGTATGATGGGATACTCCAAAACCATATAACACTTTGAGTGGAACCTCAGCACTTAGCCTTCTCACTGAGACCATCTGATTTTTTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9892#0 CANGCCAGAATTCTGCACGAGGCTGCAGAGTATCTTTTAAATCCTAACGAATTATCTGTC 60
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 ------------------------------------------------------------
consensus_9892#2 ------------------------------------------------------------
consensus_9892#0 CTACAAAAGCAACAACTTTCAATGCTATCAGACGGTTCACGAATATCCTATTGCACTAGC 120
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 ------------------------------------------------AAGCTGAATGAT 12
consensus_9892#2 ------------------------------------------------------------
consensus_9892#0 GTGAATGGCTGCCAGTTTTCAAGTCATCACTATCCGAACCAAAACTATCTACAACATAAA 180
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 ACATCTTTATATCAAACCGATATTTGTAGGTGTTGGTAGTCTGTATATGCGTCCTGTTTC 72
consensus_9892#2 ------------------------------------------------------------
consensus_9892#0 AGTATTCCATGGGGTGATTATGCCATGAATCAGTCAAATGAATCTGGAACAGCTAAGATA 240
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 GAATTATGTCTTGGGTATCTGGGATCGGAAAAGCAATCCATTTATAATCGTCAACTTGTG 132
consensus_9892#2 --------CCTCGAG--CCAANAATTCGGCACG-AGGACACGTACCACCAT-GGCTTATA 48
consensus_9892#0 CATGATAAAATGCTTAAAAAATTCCAACAATCTAAACAACAATCAAGAGGATCTACAATT 300
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 AGTCAGGTCTTATTTTAAGTGTTTATCAAGTCGGACTTACGTTGGAAACTTCTTGGTTCT 192
consensus_9892#2 AAGGTGGTCAGATTT------TTTGCTACATTGT-TACATGTTTCAAAAT---TGGAACC 98
consensus_9892#0 AAACTTGAGTTCAATTTAGGTGACTTATGCAAT--GCATTAAAACAATTGATGCTAAAAA 358
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 GTACGCGAAGCTGACTCTAGCCATTTAAATAATACGGACTCTGTTAAATGGCTTTTAGCA 252
consensus_9892#2 ACCTGTAGTGGCGGAT---GCCAATCAAAAATT--GAGTGCTGTTGAAGCACA---AATT 150
consensus_9892#0 TAGCTAAAAAAGATGAAATAGCTCAACGTGATCGTGAATGGAGGTTAGTTCTGATGACGA 418
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 TAGCATACATAGACAATTCAATACACACTTAAC-TAAACACCAACTATTTAATGTGTAAC 311
consensus_9892#2 AAAAATGCCAAAATGAAACAAAGCG--TCAAAT-CAGAAA--ACCTACTTGATACGTGGT 205
consensus_9892#0 TCGACCGTTTGTTTTGTTGGTTCTACTCCACTGTAGTCATTGTTGCAGGAGTTTACTTAT 478
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 CTCCACAAATACCAGCTAAAATGATTCTTAGTATGAATATATTTGTGGCATTTTCATTGT 371
consensus_9892#2 CATC-CAACCAACAATTACCACCATCAAATCCGCAGTCAAATTTAATCCATTCT-GTTGG 263
consensus_9892#0 TGTTCCCTAGAG--GGCGTTCACATACAGTCAACGA-AATTATAGCAATGCATCAAGAAG 535
consensus_9892#3 ----------------------------------------------------TTCGGGCG 8
consensus_9892#1 TATTAAAAATACTTGCTGTTTCTACACCATCGGCTTCAACAATAGTACCTTATTTGGGTT 431
consensus_9892#2 TGTAGAAA----------------CACAATGGGATT--ACAATAAGATTTCATCCCC-TG 304
*
consensus_9892#0 CTTACGATATGCGAAATCAAGC----TGTTGCAAAGCAATGTATGATGGGATACTCCAAA 591
consensus_9892#3 AGGCCGCTA----AAATCAAGC----TGTTGCAAAGCAATGTATGATGGGATACTCCAAA 60
consensus_9892#1 ACTTTTATTGTTTAAATATGACACTGCCTAGTTTGTCGACATTTGCTTCCACAATTGTTG 491
consensus_9892#2 AAGAGTATCTTTTAAAT---------CCTAACGAATTATC--TGTCCTACAAAAGCAACA 353
* **** * * *
consensus_9892#0 ACCATATAACACTTT----GAGTGGAACCTCAGCACTTAGCCTTCTCACTGA----GACC 643
consensus_9892#3 ACCATATAACACTTT----GAGTGGAACCTCAGCACTTAGCCTTCTCACTGA----GACC 112
consensus_9892#1 TCCAT-TTACACTTTCAACGAGTAAAATCAAAACACGTACCACCATGGCTTATAAAGGTG 550
consensus_9892#2 ACTTT-CAATGCTATCAGACGGTTCA--CGAATATCCTATTGCACTAGCGTG-AATGGCT 409
* * * ** * ** * * * * ** * * *
consensus_9892#0 ATCTGATTTTTT---TCACCTTGTTACGTCTTATTATTTCTAGTTCGTAATGACTCACCT 700
consensus_9892#3 ATCTGATTTTTT---TCA------------------------------------------ 127
consensus_9892#1 GTCAGATTTTTTGCTACATTGTTACATGTTTCAAAATTGGAACCACCTGTAGTGGCGGAT 610
consensus_9892#2 GCCAG--TTTTCAAGTCATCACTA------TCCGAACCAAAACTATCTACAACA-TAAAA 460
* * **** **
consensus_9892#0 TGATTCCAAACGTTCAGAATTTAAAAGCTTAATTTTAATGTTAAACATTTTTTGCGTTAT 760
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 GCCAATCAAAAATTGAGTGCTGTTGAAGCACAAATTAAAAATGCCAAAATGAAACAAAGC 670
consensus_9892#2 GTATTCCATGGGGTGATTA-TGCCATGAATCAGTCAAATGAATCTGGAAC--AGCTAAGA 517
consensus_9892#0 TAATTAATTTTACCCTTCATGTACTATCATATTGACTACCTGAAGTAGAAACTTTGTTCT 820
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 GTCAAATCAGAAAACCTACTTGATACGTGGTCATCCAACCAACAATTACCACCATCAAAT 730
consensus_9892#2 TACATGATAAAATGCTTAAAAAATTCA-AACAATCTAAACAACAATCA-----AGAGGAT 571
consensus_9892#0 CAATCTTCAATACTGAAATGTTTCTTCTTTTTAAACGAGGTTACGCATTTCTGATTTTCC 880
consensus_9892#3 ------------------------------------------------------------
consensus_9892#1 CCGCAGTCAAATTCAA-TCCATTCTGTTGGTGTAGAAACACAATGGGATTACAATAAGAT 789
consensus_9892#2 CTACAATTAAACTTGAGTTCAATTTA--GGTG-ACTTATGCAATGC-ATTANAACAA--- 624
consensus_9892#0 ATCTTCACTTAATCATTAACTCAGAA----- 906
consensus_9892#3 -------------------------------
consensus_9892#1 TTCATCCCCTGAAGAGTATCTTTTAAATCCT 820
consensus_9892#2 TTGATGCTA---------------------- 633
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||