These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 874 fasta sequence [CCTCCAGGCCAANAATTCGGCACGAGGGCGAAAACGTACAGCGCCTCGTTTCTATGTAACTCCTCTTGCTTTGGATTTCGCTGGAGGTCATACTACTTTCTTGGAAAGTAAATCAGGTGGATGGGGTCCACAATCGGGGGTTATTCCTACTGGTGTCTCAAAATCAGATCCCACCGACAGCAATAAAATGTTTTCGCAGATTTCAGTATCGAATTCTTCCGATGTTGGTTACATTTTGCTCGAAACCAATTTTCGACTATACGCCTATACAGATTCACCGCTTCGTACTGCTCTTCTTAGCTTATTTAGCAAAATACGTGCACGTTTTCCTAATCTTGTTGTTGCTGATATAACCCGTGACTCAGTTCGGGAAGCATTAATTCGTGGAATAACTGCAAATCAGATCCTATCTTTCTTAACAGCCAATGCACATCCAGATATGTTACTACAGAATCCTATATTACCGCCTACTTTAACCGATCAAATACGACTATGGGAATTAGAGCGAGATAGATTTCTATTTCAAGAAGGCTGTCTGTATGAACAATTCTCTCGGAATACAGATTTTGAAATGGTTCGGGATTATGC-TAAAAGTATTGGTGTTTTACTCTGGGAAAATCCTGAACGAAGACT-TATGGTTGTGTCTAAAGCAGGTCATGAAGATGTACGGAAATTTTGGAAACACAAACGTCCGTCCTAAAACTTTGTCACCGTTCACTTTTCCTTTCCTACTCCAGATTATATGTACGTAAATAGTTACATTTTCACTTTTATTCAAACAGTATTTGTTGAAGAAAGATTTTACAGCAAAACTCCGTGATTTGTTATTTTTCATATTATATTAAAATAAAATTGCCTTAAGTATTTATCTTCC] [+] EMBL CD080185 [CCTCCAGGCCAANAATTCGGCACGAGGGCGAAAACGTACAGCGCCTCGTTTCTATGTAACTCCTCTTGCTTTGGATTTCGCTGGAGGTCATACTACTTTCTTGGAAAGTAAATCAGGTGGATGGGGTCCACAATCGGGGGTTATTCCTACTGGTGTCTCAAAATCAGATCCCACCGACAGCAATAAAATGTTTTCGCAGATTTCAGTATCGAATTCTTCCGATGTTGGTTACATTTTGCTCGAAACCAATTTTCGACTATACGCCTATACAGATTCACCGCTTCGTACTGCTCTTCTTAGCTTATTTAGCAAAATACGTGCACGTTTTCCTAATCTTGTTGTTGCTGATATAACCCGTGACTCAGTTCGGGAAGCATTAATTCGTGGAATAACTGCAAATCAGATCCTATCTTTCTTAACAGCCAATGCACATCCAGATATGTTACTACAGAATCCTATATTACCGCCTACTTTAACCGATCAAATACGACTATGGGAATTAGAGCGAGATAGATTTCTATTTCAAGAAGGCTGTCTGTATGAACAATTCTCTCGGAATACAGATTTTGAAATGGTTCGGGATTATGCNTAAAAGTATTGGTGTTTTACTCTGGGAAAATCCTGAACGAAGACTNNATGGTTGTGTCTAAAGCAGGTCATGAAGATGTACGGAAATTTTGGAAACACAAACGTCCGTCCTAAAACTNTGTCACCGTTCACTTTTCCTTTCCTACTCCAGATTATATGTACGTAAATAGTTACATTNTCACTTTTATTC AACAGTATTTGTTGAAGAAAGA TTTACAGC AAACTCCGGGATTTGTTA TTTTCATA TATATT AAATAAAATTGCCTT AGT TTTAT ] [+] EMBL AW587546 [ TGGTGTCTCAAAATCAGATCCCACCGACAGCAATAAAATGTTTTCGCAGATTTCAGTATCGAATTCTTCCGATGTTGGTTACATTTTGCTCGAAACCAATTTTCGACTATACGCCTATACAGATTCACCGCTTCGTACTGCTCTTCTTAGCTTATTTAGCAAAATACGTGCACGTTTTCCTAATCTTGTTGTTGCTGATATAACCCGTGACTCAGTTCGGGAAGCATTAATTCGGGGAATAACTGCAAATCAGATCCTATCTTTCTTAACAGCCAATGCACATCCAGATATGTTACTACAGAATCCTATATTACCGCCTACTTTAACCGATCAAATACGACTATGGGAATTA ] [-] EMBL CD181984 [ CAATAAAATGTTTTCGCAGA TTCAGTATCGAATTCTTCCGATGTTGGTTACATTTTGCTCGAAACCAATTTTCGACTATACGCCTATACAGATTCACCGCT ] [+] EMBL BG930646 [ TGGTTACATTTTGCTCGAAACCAATTTTCGACTATACGCCTATACAGATTCACCGCTTCGTACTGCTCTTCTTAGCTTATTTAGCAAAATACGTGCACGTTTTCCTAATCTTGTTGTTGCTGATATAACCCGTGACTCAGTTCGGGAAGCATTAATTCGTGGAATAACTGCAAATCAGAa ] [-] EMBL CD073409 [ GTTCGGGAAGCATTAATTCGTGGAATAACTGCAAATCAGATCCTATCTTTCTTAACAGCCAATGCACATCCAGATATGTTACTACAGAATCCTATATTACCGCCTACTTTAACCGATCAAATACGACTATGGGAATTAGAGCGAGATAGATTTCTATTTCAAGAAGGCTGTCTGTATGAACAATTCTCTCGGAATACAGATTTTGAAATGGTTCGGGATTATGC TAAAAGTATTGGTGTTTTACTCTGGGAAAATCCTGAACGAAGACT TATGGTTGTGTCTAAAGCAGGTCATGAAGATGTACGGAAATTTTGGAAACACAAACGTCCGTCCTAAAACTTTGTCACCGTTCACTTTTCCTTTCCTACTCCAGATTATATGTACGTAAATAGTTACATTTTCACTTTTATTCAAACAGTATTTGTTGAAGAAAGATTTTACAGCAAAACTCCGTGATTTGTTATTTTTCATATTATATTAAAATAAAATTGCCTTAAGTATTTATCTT ] [+] EMBL CD132795 [ TTCGTGGAATAACTGCAAATCAGATCCTATCTTTCTTAACAGCCAATGCACATCCAGATATGTTACTACAGAATCCTATATTACCGCCTACTTTAACCGATCAAATACGACTATGGGAATTAGAGCGAGATAGATTTCTATTTCAAGAAGGCTGTCTGTATGAACAATTCTCTCGGAATACAGATTTTGAAATGGTTCGGGATTATGC TAAAAGTATTGGTGTTTTACTCTGGGAAAATCCTGAACGAAGACT TATGGTTGTGTCTAAAGCAGGTCATGAAGATGTACGGAAATTTTGGAAACACAAACGTCCGTCCTAAAACTTTGTCACCGTTCACTTTTCCTTTCCTACTCCAGATTATATGTACGTAAATAGTTACATTTTCACTTTTATTCAAACAGTATTTGTTGAAGAAAGATTTTACAGCAAAACTCCGTGAATTGTTATTTTTCATATTATATTAAAATAAAATTGCCTTAAGTATTTATCTTCC] consensusID : consensus_9897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 675 fasta sequence [GTTTATATGTGAATTAATTTCCTTTCTCGCAGGCTATACTTCACTTTATGGTAGGTTCTGAATCAGCGGAAGTTGGAAGTGTTGTGAAGGATGTCCTTTTATTGTCCAATTTAATGAAATGGTATGTTCAAATTACTAACTGTAGATTTATTTTCACATATACTAACTATCAGTGAAGGTAATGATTGTCCAATCGGTATCACAAAGCACGGGTTCCATTTCTTGCTTATGAGTCGACAGTTCCAGGTGCTAGTTTTCATCTTGCACTACTTTGACTACTTGAAGGTAATTCAGCTACTAACTGTGATCTACTGTTGTTTTTTTATCTTAACAGGAAAATAGTAAAAATTTAGTTGGAGCCCTACAGTTCGTCTTCCAACTTAGTTTTTTGTGTCCGACAAAGGTGAGCTTAAGTGCATTTGTTTTATAAGGTTAAAATGCACTGGACCCAGTGACTGTGCACACTTTTCTGTCTTAGGTTGTAGGTCACACTTGTTATGGGTTCTCGTTATGTTCATGTACTAGGTTTATATTTCACAACTCCAACTTCAATACAGTGAATAAGACTACTGCTATCCTCTTCTTCCTTGCCCCTTAT-AGTAGAGTAAGAAACCTGGTTTTTAATAGAAGCTTTGTTGATAATGACCCCCATTGTAACTAAAAGTACGTGTAAGT] [+] EMBL CD168971 [GTTTATATGTGAATTAATTTCCTTTCTCGCAGGCTATACTTCACTTTATGGTAGGTTCTGAATCAGCGGAAGTTGGAAGTGTTGTGAAGGATGTCCTTTTATTGTCCAATTTAATGAAATGGTATGTTCAAATTACTAACTGTAGATTTATTTTCACATATACTAACTATCAGTGAAGGTAATGATTGTCCAATCGGTATCACAAAGCACGGGTTCCATTTCTTGCTTATGAGTCGACAGTTCCAGGTGCTAGTTTTCATCTTGCACTACTTTGACTACTTGAAGGTAATTCAGCTACTAACTGTGATCTACTGTTGTTTTTTTATCTTAACAGGAAAATAGTAAAAATTTAGTTGGAGCCCTACAGTTCGTCTTCCAACTTAGTTTTTTGTGTCCGACAAAGGTGAGCTTAAGTGCATTTGTTTTATAAGGTTAAAATGCACTGGACCCAGTGACTGTGCACACTTTTCTGTCTTAGGTTGTAGGTCACACTTGTTATGGGTTCTCGTTATGTTCATGTACTAGGTTTATATTTCACAACTCCAACTTCAATACAGTGAATAAGACTACTGCTATCCTCTTCTTCCTTGCCCCTTAT AGTAGAGTAAGAAACCTGGTTTTTAATAGAAGCTTTGTTGATAATGACCCCCATTGTAACTAAAAGTACGTGTAAGT] [+] EMBL CD169090 [GTTTATATGTGAATTAATTTCCTTTCTCGCAGGCTATACTTCACTTTATGGTAGGTTCTGAATCAGCGGAAGTTGGAAGTGTTGTGAAGGATGTCCTTTTATTGTCCAATTTAATGAAATGGTATGTTCAAATTACTAACCGTAGATTTATTTTCACATATACTAACTATCAGTGAAGGTAATGATTGTCCAATCGGTATCACAAAGCACGGGTTCCATTTCTTGCTTATGAGTCGACAGTTCCAGGTGCTAGTTTTCATCTTGCACTACTTTGACTACTTGAAGGTAATTCAGCTACTAACTGTGATCTACTGTTGTTTTTTTATCTTAACAGGAAAATAGTAAAAATTTAGTTGGAGCCCTACAGTTCGTCTTCCAACTTAGTTTTTTGTGTCCGACAAAGGTGAGCTTAAGTGCATTTGTTTTATAAGGTTAAAATGCACTGGACCCAGTGACTGTGCACACTTTTCTGTCTTAGGTTGTAGGTCACACTTGTTATGGGTTCTCGTTATGTTCATGTACTAGGTTTATATTTCACAACTCCAACTTCAATACAGTGAATAAGACTACTGCTATCCTCTTCTTCCTTG CCCTTATAAGTAGAGTAAGA ] [+] EMBL CD168980 [GTTTATATGTGAATTAATTTCCTTTCTCGCAGGCTATACTTCACTTTATGGTAGGTTCTGAATCAGCGGAAGTTGGAAGTGTTGTGAAGGATGTCCTTTTATTGTCCAATTTAATGAAATGGTATGTTCAAATTACTAACTGTAGATTTATTTTCACATATACTAACTATCAGTGAAGGTAATGATTGTCCAATCGGTATCACAAAGCACGGGTTCCATTTCTTGCTTATGAGTCGACAGTTCCAGGTGCTAGTTTTCATCTTGCACTACTTTGACTACTTGAAGGTAATTCAGCTACTAACTGTGATCTACTGTTGTTTTTTTATCTTAACAGGAAAATAGTAAGAATTTAGTTGGAGCCCTACAGTTCGTCTTCCAACTTAGTTTTTTGTGTCCGACAAAGGTGAGCTTAAGTGCATTTGTTTTATAAGGTTAAAATGCACTGGACCCAGTGACTGTGCACACTTTTCTGTCTTAGGTTGTAGGTCACACTTGTTATGGGTTCTCGTTATGTTCATGTACTAGGTTTATATTTCACAACTCCAACTTCAATACAGTGAATAAGACTACTGCTATCCTCTTCTTCCTTGC ] [+] EMBL CD169036 [GTTTATATGTGAATTAATTTCCTTTCTCGCAGGCTATACTTCACTTTATGGTAGGTTCTGAATCAGCGGAAGTTGGAAGTGTTGTGAAGGATGTCCTTTTATTGTCCAATTTAATGAAATGGTATGTTCAAATTACTAACTGTAGATTTATTTTCACATATACTAACTATCAGTGAAGGTAATGGTTGTCCAATCGGTATCACAAAGCACGGGTTCCATTTCTTGCTTATGAGTCGACAGTTCCAGGTGCTAGTTTTCATCTTGCACTACTTTGACTACTTGAAGGTAATTCAGCTACTAACTGTGATCTACTGTTGTTTTTTTATCTTAACAGGAAAATAGTAAAAATTTAGTTGGAGCCCTACAGTTCGTCTTCCAACTTAGTTTTTTGTGTCCGACAAAGGTGAGCTTAAGTGCATTTGTTTTATAAGGTTAAAATGCACTGGACCCAGTGACTGTGCACACTTTTCTGTCTTAGGTTGTAGGTCACACTTGTTATGGGTTCTCGTTATGTTCATGTACTAGGTTTATATTTCACAACTCCAACTTCAATACAGTGAATAAGACTACTGCT ] consensusID : consensus_9897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 609 fasta sequence [TCTATTCGGATATCACTATTCGGAGGTGGAAAACCCTTACTTGGAGATTTAGGCGTTGTGACAAACGATAAGTACTCAAAAAGCGTTGACTTTTTAAAATCTTATGCAGCTGAACGATGGGATGCTATACTTCACTTTATGGTAGGTTCTGAATCAGCGGAAGTTGGAAGTGTTGTGAAGGATGTCCTTTTATTGTCCAATTTAATGAAATGTGAAGGTAATGATTGTCCAATCGGTATCACAAAGCACGGGTTCCATTTCTTGCTTATGAGTCGACAGTTCCAGGTGCTAGTTTTCATCTTGCACTACTTTGACTACTTGAAGGAAAATAGTAAAAATTTAGTTGGAGCCCTACAGTTCGTCTTCCAACTTAGTTTTTTGTGTCCGACAAAGAGCTATCCAGTAGAGGCACTGAGTACTGCCCAACAGGAAGTATTACAACATATGCGCGAACTCGGTTTAGCTTATCAACGAAAACGTACAGCGCCTCGTTTCTATGTAACTCCTCTTGCTTTGGATTTCGCTGGAGGTCATACTACTTTCTTGGAAAGTAAATCAGGTGGATGGGGTCCACAATCGGGGGTTATTCCTACTGGTGTCTCAAATCAG] [+] EMBL CD192427 [TCTATTCGGATATCACTATTCGGAGGTGGAAAACCCTTACTTGGAGATTTAGGCGTTGTGACAAACGATAAGTACTCAAAAAGCGTTGACTTTTTAAAATCTTATGCAGCTGAACGATGGGATGCTATACTTCACTTTATGGTAGGTTCTGAATCAGCGGAAGTTGGAAG ] [+] EMBL CD078955 [ CGGATATCACTATTCGGAGGTGGAAAACCCTTACTTGGAGATTTAGGCGTTGTGACAAACGATAAGTACTCAAAAAGCGTTGACTTTTTAAAATCTTATGCAGCTGAACGATGGGATGCTATACTTCACTTTATGGTAGGTTCTGAATCAGCGGAAGTTGGAAGTGTTGTGAAGGATGTCCTTTTATTGTCCAATTTAATGAAATGTGAAGGTAATGATTGTCCAATCGGTATCACAAAGCACGGGTTCCATTTCTTGCTTATGAGTCGACAGTTCCAGGTGCTAGTTTTCATCTTGCACTACTTTGACTACTTGAAGGAAAATAGTAAAAATTTAGTTGGAGCCCTACAGTTCGTCTTCCAACTTAGTTTTTTGTGTCCGACAAAGAGCTATCCAGTAGAGGCACTGAGTACTGCCCAACAGGAAGTATTACAACATATGCGCGAACTCGGTTTAGCTTATCAACGAAAACGTACAGCGCCTCGTTTCTATGTAACTCCTCTTGCTTTGGATTTCGCTGGAGGTCATACTACTTTCTTGGAAAGTAAATCAGGTGGATGGGGTCCACAATCGGGGGTTATTCCTACTGGTGTCTCAAATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9897#1 ------------------------------------------------------------ consensus_9897#2 ------------------------------------------------------------ consensus_9897#0 CCTCCAGGCCAANAATTCGGCACGAGGGCGAAAACGTACAGCGCCTCGTTTCTATGTAAC 60 consensus_9897#1 ---------------------------------------GTTTATATGTGAATTAATTTC 21 consensus_9897#2 -----TCTATTCGGATATCACTATTCGGAGGTGGAAAACCCTTACTTGGAGATTTAGGCG 55 consensus_9897#0 TCCTCTTGCTTTGGATTTCGCTGGAGGTCATACTACTTTCTTGGAAAGTAAATCAGGTGG 120 * * ** consensus_9897#1 CTTTCTCGCAGGCTATAC-TTCACTTTATGGTAGGTTCT--GAATCAGCGGAAGTTGG-- 76 consensus_9897#2 TTGTGACAAACGATAAGTACTCAAAAAGCGTTGACTTTTTAAAATCTTATGCAGCTGA-- 113 consensus_9897#0 ATGGGGTCCACAATCGGGGGTTA-TTCCTACTGGTGTCTCAAAATCAGATCCCACCGACA 179 * * * * * * * * **** * consensus_9897#1 AAG-TGTTGTGAAGGATGTCCTTTTATTGTCCAATTTAATGAAATGGTATGTTCAAAT-- 133 consensus_9897#2 ACGATGGGATGCTATACTTCACTTTATGGTAGGTTCTGAATCAGCGGAAGTTGGAAGTG- 172 consensus_9897#0 GCAATAAAATGTTTTCGCAGATTTCAGTATCGAATTCT-TCCGATGTTGGTTACATTTTG 238 * ** ** * * * * * * * consensus_9897#1 -TACTAACTGTAGATTTATTTT-CACATATACTAACTATCAGTGAAGGTAATGATTGTCC 191 consensus_9897#2 -TTGTGAAGGATGTCCTTTTAT-TGTCCAATTTAATGAAATGTGAAGGTAATGATTGTCC 230 consensus_9897#0 CTCGAAACCAATTTTCGACTATACGCCTATACAGATTCACCGCTTCG-TACTGCTCTTCT 297 * * * * * * * * ** ** * ** consensus_9897#1 -AATCGGTATCACAAAGCACGGGTTCCATTTCTTGCTTATGA-GTCGACAGTTCCAGGTG 249 consensus_9897#2 -AATCGGTATCACAAAGCACGGGTTCCATTTCTTGCTTATGA-GTCGACAGTTCCAGGTG 288 consensus_9897#0 TAGCTTATTTAGCAAAATACGTGCACGTTTTCCTAATCTTGTTGTTGCTGATATAACCCG 357 * * * **** *** * * **** * * ** ** * * * * consensus_9897#1 CTAGTT--TTCATCTTGCACTACTTTG----ACTACTTGAAGGTAATTCAGCTACTAACT 303 consensus_9897#2 CTAGTT--TTCATCTTGCACTACTTTG----ACTACTTGAAGG----------------- 325 consensus_9897#0 TGACTCAGTTCGGGAAGCATTAATTCGTGGAATAACTGCAAATCAGATCCTATCTTTCTT 417 * * *** *** ** ** * * *** ** consensus_9897#1 GTGATCTACTGTTGTTTTTTTATCTTAACAGGAAAATAGTAAAA----ATTTAGTTGGAG 359 consensus_9897#2 --------------------------------AAAATAGTAAAA----ATTTAGTTGGAG 349 consensus_9897#0 AACAGCCAATGCACATCCAGATATGTTACTACAGAATCCTATATTACCGCCTACTTTAAC 477 * *** ** * ** ** * consensus_9897#1 CCCTACAGTTCGTCTTC-----------CAACTTAGTTTTTTGTGTCCGACAAAGGTGAG 408 consensus_9897#2 CCCTACAGTTCGTCTTC-----------CAACTTAGTTTTTTGTGTCCGACAAAGA-GCT 397 consensus_9897#0 CGATCAAATACGACTATGGGAATTAGAGCGAGATAGATTTCTAT-TTCAAGAAGGCTGTC 536 * * * * ** ** * * *** *** * * * * * ** * * consensus_9897#1 CTTAAGTGCATTTGTTTTATAAGGTTAAAATGCACTGGACCCAGTGA-CTGTGCACACTT 467 consensus_9897#2 ATCCAGTAGAGGCACTGAGTACTGCCCAACAGGAAGTATTACAACAT-ATGCGCGAACTC 456 consensus_9897#0 TGTATGAACAATTCTCTCGGAATACAGATTTTGAAATGGTTCGGGATTATGCTAAAAGTA 596 * * * * * * ** * * consensus_9897#1 TTCTGTCTTAGGTTGTAGGTCACA-CTTGTTATGGGTTCTCGTTATGTTCATGTACTAGG 526 consensus_9897#2 ----GGTTTAGCTTATCAACGAAAACGTACAGCGCCTCGTTTCTATGTAACTCCTCTTGC 512 consensus_9897#0 TTGGTGTTTTACTCTGGGAAAATCCTGAACGAAGACTTATGGTTGTGTCTAAAGCAGGTC 656 ** * * * * * * *** consensus_9897#1 TTTATATTTCAC---AACTCCAACTTCAAT-----ACAGTGAATAAGACTACTGCTATCC 578 consensus_9897#2 TTTGGATTTCGCTGGAGGTCATACTACTTTCTTGGAAAGTAAATCAGGTGGATGGGGTCC 572 consensus_9897#0 ATGAAGATGTACGGAAATTTTGGAAACACAAACGTCCGTCCTAAAACTTTGTCACCGTTC 716 * * * * * * * * * * consensus_9897#1 TCTTCTTCCTTGCCCCTTATAGTAGAGTAAGAAACCTGGTTTTTAATAGAAGCTTTGTTG 638 consensus_9897#2 ACAA-TCGGGGGTTATTCCTACTGGTGTCTCAAATCAG---------------------- 609 consensus_9897#0 ACTTTTCCTTTCCTACTCCAGATTATATGT-ACGTAAATAGTTACATTTTCACTTTTATT 775 * * * * * * consensus_9897#1 ATAATGACCCCCATTGTAACTAAAAGTACGTGTAAGT----------------------- 675 consensus_9897#2 ------------------------------------------------------------ consensus_9897#0 CAAACAGTATTTGTTGAAGAAAGATTTTACAGCAAAACTCCGTGATTTGTTATTTTTCAT 835 consensus_9897#1 --------------------------------------- consensus_9897#2 --------------------------------------- consensus_9897#0 ATTATATTAAAATAAAATTGCCTTAAGTATTTATCTTCC 874 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||