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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9898#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 875 fasta sequence
[TTGGCACGAGGTTCGATTTCGACCATCCAAATTCGTTTGACTTCAATATTTGGCTGAGGTTTTGAGGAAAATAAAACATGGAGAACCTGTGGTCCTTCACAAATATGACTGCTCTGCTTATTCAAGCACCCCAGATGTTCAGGAGGTCCCGGATGATGTAGATGTTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCAACAATATATACCCCGTGCAAGAAATCAATCAGAATCTTGTGTAGGTTCTTTCAGACCGCATTAATCACCTAGTGATAATGGCATTAACTTTATTTGTATATATTATCTGGTTTATTTAATTAGAATGTTATTATTTTGATATTTCCAATCGAACTCCGTATTCCCTTCTTCTCCTTACTTTTTATCTGTTCATCCCTAATTATTTAAGAAACTCTGTAAGCTTCTAAAAAGTGATTTATTATTTAGAAAGTGCTTACATTTATCA-AA-TATTTTACTTGTTTACAGATGCATTGTTCCTAACAACTCATTTATCATTG-A-AGGACAGTATATGCCTGCATAGCATCCTGATAATTATTTTAATCTGA-TTGAA-AGAGCCTTTGAATAAA]
[+] EMBL CD079826 [TTGGCACGAGGTTCGATTTCGACCATCCAAATTCGTTTGACTTCAATATTTGGCTGAGGTTTTGAGGAAAATAAAACATGGAGAACCTGTGGTCCTTCACAAATATGACTGCTCTGCTTATTCAAGCACCCCAGATGTTCAGGAGGTCCCGGATGATGTAGATGTTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCAACAATATATACCCCGTGCAAGAAATCAATCAGAATCTTGTGTAGGTTCTTTCAGACCGCATTAATCACCTAGTGATAATGGCATTAACTTTATTTGTATATATTATCTGGTTTATTTAATTAGAATGTTATTATTTTGATATTTCCAATCGAACTCCGTATTCCCTTCTTCTCCTTACTTTTTATCTGTTCATCCCCTATTATTTAAGAAACTCTGTAAGCTTCT AANAGTGATTTATTATTTAG AAGTGCTTACATTTATCA AA TATTTTACTNGTTTACAGATGCATTGNTCCT ACAACTCA TTATCATTG A AGGACAG ATATGCCTGC TAGCAT CTGA AAATA TTTAATC GA TTGAA AGAGCC TTG ATAAA]
[-] EMBL CD126280 [ GGTTTTGAGGAAAATAAAACATGGAGAACCTGTGGTCCTTCACAAATATGACTGCTCTGCTTATTCAAGCACCCCAGATGTTCAGGAGGTCCCGGATGATGTAGATGTTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCAATAAAAAATATGCTGATGTCATCTTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCAACAATATATACCCCGTGCAAGAAATCAATCAGAATCTTGTGTAGGTTCTTTCAGACCGCATTAATCACCTAGTGATAATGGCATTAACTTTATTT ]
[+] EMBL CD078964 [ ATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCAACAATATATACCCCGTGCAAGAAATCAATCAGAATCTTGTGTAGGTTCTTTCAGACCGCATTAATCACCTAGTGATAATGGCATTAACTTTATTTGTATATATTATCTGGTTTATTTAATTAGAATGTTATTATTTTGATATTTCCAATCGAACTCCGTATTCCCTTCTTCTCCTTACTTTTTATCTGTTCATCCCTAATTATTTAAGAAACTCTGTAAGCTTCTAAAAAGTGATTTATTATTTAGAAAGTGCTTACATTTATCANAT TATTTTACTTGTTTACAGATGCATTGTTCCTAACAACTCATTTATCATTG ANAGGACAGTATATGCCTGCATAGCATCCTGATAATTATTTTAATCTGA TTTGA AGAGag ]
[-] EMBL CD074067 [ ATCAGATGCAGACACTAGACTTGNCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCAACAATATATACCCCGTGCAAGAAATCAATCAGAATCTTGTGTAGGTTCTTTCAGACCGCATTAATCACCTAGTGATAATGGCATTAACTTTATTTGTATATATTATCTGGTTTATTTAATTAGAATGTTATTATTTTGATATTTCCAATCGAACTCCGTATTCCCTTCTTCTCCTTACTTTTTATCTGTTCATCCCTAATTATTTAAGAAACTCTGTAAGCTTCTAAAAAGTGATTTATTATTTAGAAAGTGCTTACATTTATCA AATTATTTTACTTGTTTACAGATGCATTGTTCCTAACAACTCATTTATCATTGAA AGGACAGTATATGCCTGCATAGCATCCTGATAATTATTTTAATCTGATTTGAAGAGAGCCTTTGAATAA ]
[-] EMBL CD073400 [ TATGGTGATGTCATCCTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCAACAATATATACCCCGTGCAAGAAATCAATCAGAATCTTGTGTAGGTTCTTTCAGACCGCATTAATCACCTAGTGATAATGGCATTAACTTTATTTGTATATATTATCTGGTTTATTTAATTAGAATGTTATTATTTTGATATTTCCAATCGAACTCCGTATTCCCTTCTTCTCCTTACTTTTTATCTGTTCATCCCTAATTATTTAAGAAACTCTGTAAGCTTTTAAAAAGTGATTTATTATTTAGAAAGTGCTTACATTTATCA AATTATTTTACTTGTTTACAGATGCATTGTTCCTAACAACTCATTTATCATTGAA AGGACAGTATATGCCTGCATAGCATCCTGATAATTATTTTAATCTGATTTGAAGAGAGCCTTTGAATAA ]
consensusID : consensus_9898#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 730 fasta sequence
[AGGCCAANAATTTGGCACGAGGGGCTTCCAAACCTTTCCTAATCGGTATTAGTGGTGGAGCAGCTTCAGGGAAGGCAGAAGCATGCAAAAAGATAAAGGATGTCTTATACAAAAAGGCGAAAGGGAAGAAAGTTGAAGTTCTTTCCCTGTCATCGTTTTATCGTGAACTTTCTGATGATGAACTCAAATTAGCCTTGAACAGTGAGTTTGATTTCGACCATCCAAATTCGTTTGACTTCAAATATTTGGCTGAGGTTTTGAGGAAAATAAAACATGGAGAACCTGTGGTCCTTCACAAATATGACTGCTCTGCTTATTCAAGCACCCCAGATGTTCAGGAGGTCCCGGATGATGTAGATGTTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCAAACATATATACCCCGTGCAAGAAATCAATCAGAATCTTGTGTAGG]
[+] EMBL CD079809 [AGGCCAANAATTTGGCACGAGGGGCTTCCAAACCTTTCCTAATCGGTATTAGTGGTGGAGCAGCTTCAGGGAAGGCAGAAGCATGCAAAAAGATAAAGGATGTCTTATACAAAAAGGCGAAAGGGAAGAAAGTTGAAGTTCTTTCCCTGTCATCGTTTTATCGTGAACTTTCTGATGATGAACTCAAATTAGCCTTGAACAGTGAGTTTGATTTCGACCATCCAAATTCGTTTGACTTCAAATATTTGGCTGAGGTTTTGAGGAAAATAAAACATGGAGAACCTGTGGTCCTTCACAAATATGACTGCTCTGCTTATTCAAGCACCCCAGATGTTCAGGAGGTCCCGGATGATGTAGATGTTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCAAACATATATACCCCGTGCAAGAAATCAATC ]
[+] EMBL CD192747 [ AGATAAAGGATGTCTTATACAAAAAGGCGAAAGGGAAGAAAGTTGAAGTTCTTTCCCTGTCATCGTTTTATCGTGAACTTTCTGATGATGAACTCAAATTAGCCTTGAACAGTGAGTTTGATTTCGACCATCCAAATTCGTTTGACTTCAAATATTTGGCTGAGGTTTTGAGGAAAATAAAACATGGAGAACCTGTGGTCCTTCACAAATATGACTGCTCTGCTTATTCAAGactaa ]
[+] EMBL CD078946 [ CAAAAAGGCGAAAGGGAAGAAAGTTGAAGTTCTTTCCCTGTCATCGTTTTATCGTGAACTTTCTGATGATGAACTCAAATTAGCCTTGAACAGTGAGTTTGATTTCGACCATCCAAATTCGTTTGACTTCAAATATTTGGCTGAGGTTTTGAGGAAAATAAAACATGGAGAACCTGTGGTCCTTCACAAATATGACTGCTCTGCTTATTCAAGCACCCCAGATGTTCAGGAGGTCCCGGATGATGTAGATGTTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCAACAATATATACCCCGTGCAAGAAATCAATCAGAATCTTGTGTAGG]
[+] EMBL CD192864 [ CAGATGTTCAGGAGGTCCCGGATGATGTAGATGTTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAA ]
[+] EMBL CD185882 [ GTTCAGGAGGTCCCGGATGATGTAGATGTTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTGCACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATGATTCACCTCTGATTCATAATGTTCA ]
[+] EMBL CD192606 [ TTCAGGAGGTCCCGGATGATGTAGATGTTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGTTTTGTCTTCCCACTAA ]
[+] EMBL CD192372 [ GAAGTCAGAGACATGTTTGATTTAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATGTTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAACCTGCATTTGAGGAGATGTGTCTTCCCACTAAAAAATATGCTGATGTCgcttnnnc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9898#0 ------------------------------------------------------------
consensus_9898#1 AGGCCAANAATTTGGCACGAGGGGCTTCCAAACCTTTCCTAATCGGTATTAGTGGTGGAG 60
consensus_9898#0 ------------------------------------------------------------
consensus_9898#1 CAGCTTCAGGGAAGGCAGAAGCATGCAAAAAGATAAAGGATGTCTTATACAAAAAGGCGA 120
consensus_9898#0 ------------------------------------------------------------
consensus_9898#1 AAGGGAAGAAAGTTGAAGTTCTTTCCCTGTCATCGTTTTATCGTGAACTTTCTGATGATG 180
consensus_9898#0 ---------------TTGGCACGAGGTTCGATTTCGACCATCCAAATTCGTTTGACTTCA 45
consensus_9898#1 AACTCAAATTAGCCTTGAACAGTGAGTTTGATTTCGACCATCCAAATTCGTTTGACTTCA 240
* ** *** *******************************
consensus_9898#0 A-TATTTGGCTGAGGTTTTGAGGAAAATAAAACATGGAGAACCTGTGGTCCTTCACAAAT 104
consensus_9898#1 AATATTTGGCTGAGGTTTTGAGGAAAATAAAACATGGAGAACCTGTGGTCCTTCACAAAT 300
* **********************************************************
consensus_9898#0 ATGACTGCTCTGCTTATTCAAGCACCCCAGATGTTCAGGAGGTCCCGGATGATGTAGATG 164
consensus_9898#1 ATGACTGCTCTGCTTATTCAAGCACCCCAGATGTTCAGGAGGTCCCGGATGATGTAGATG 360
************************************************************
consensus_9898#0 TTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATT 224
consensus_9898#1 TTGTCATCGTAGAAGGAATACTAACGTTTTATCAAAAAGAAGTCAGAGACATGTTTGATT 420
************************************************************
consensus_9898#0 TAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATG 284
consensus_9898#1 TAAAAATCTTCATTGAATCAGATGCAGACACTAGACTTTGCAGAAAAGTCCTAAGAGATG 480
************************************************************
consensus_9898#0 TTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAAC 344
consensus_9898#1 TTTCTATGAAAGGTCGTTGCTTGGATTCCGTACTCGATAGTTACTTTAAATACGTTAAAC 540
************************************************************
consensus_9898#0 CTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTG 404
consensus_9898#1 CTGCATTTGAGGAGTTTTGTCTTCCCACTAAAAAATATGCTGATGTCATCCTACCACGTG 600
************************************************************
consensus_9898#0 CACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATG 464
consensus_9898#1 CACCAGACAATCATGTTGGTGTCGACTTAATCACCGAACACTTGTTACAACTTGTAAATG 660
************************************************************
consensus_9898#0 ATTCACCTCTGATTCATAATGTTCAACAATATATACCCCGTGCAAGAAATCAATCAGAAT 524
consensus_9898#1 ATTCACCTCTGATTCATAATGTTCAAACATATATACCCCGTGCAAGAAATCAATCAGAAT 720
************************** ********************************
consensus_9898#0 CTTGTGTAGGTTCTTTCAGACCGCATTAATCACCTAGTGATAATGGCATTAACTTTATTT 584
consensus_9898#1 CTTGTGTAGG-------------------------------------------------- 730
**********
consensus_9898#0 GTATATATTATCTGGTTTATTTAATTAGAATGTTATTATTTTGATATTTCCAATCGAACT 644
consensus_9898#1 ------------------------------------------------------------
consensus_9898#0 CCGTATTCCCTTCTTCTCCTTACTTTTTATCTGTTCATCCCTAATTATTTAAGAAACTCT 704
consensus_9898#1 ------------------------------------------------------------
consensus_9898#0 GTAAGCTTCTAAAAAGTGATTTATTATTTAGAAAGTGCTTACATTTATCAAATATTTTAC 764
consensus_9898#1 ------------------------------------------------------------
consensus_9898#0 TTGTTTACAGATGCATTGTTCCTAACAACTCATTTATCATTGAAGGACAGTATATGCCTG 824
consensus_9898#1 ------------------------------------------------------------
consensus_9898#0 CATAGCATCCTGATAATTATTTTAATCTGATTGAAAGAGCCTTTGAATAAA 875
consensus_9898#1 ---------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||