These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 388 fasta sequence [CATCGTACACC-TCAGTCAAACCATCACAGATCCC-GGCAACGCCACGT-ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAA----TTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTG] [+] EMBL CD122606 [CATCGTACACC TCAGTCAAACCATCACAGATCCC GGCAACGCCACGT ACCAATCCACTTCGCTTCAATGATACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTTGCTTCAATGTTACGTACGAATCACTTAATCACCATCAATCAAACCATCACACATCCAGGCAACGCCACGAACCAATCCACTTTGCTTGAATGTTACGCACGAA TTAATCACTATCAGTCAAACCATCACTGATCCAGGCGACGCTACTGACTAATCCACTTG] [-] EMBL CD128758 [ ttaatCACCATCAGTCAAACCATCACAGATCCC GGCAACGCAACGT ACCAATCCACTTCGCTTCAATGTCACGAACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACC ] [+] EMBL CD122695 [ GTCAAACCATCACAGATCCC GGGAACGCCACGTGACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAA TTACTCACTATCAGTCAAACCATCACAGATCCCGGCAGCGCCACGTACCAATCC ] [+] EMBL CD159922 [ CACAGATCCC GGCAACGCCACGT ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCATAGATCCCGGCAATGCCACGTACCAGTCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAA ] [+] EMBL CD159834 [ CACAGATCCC GGCAACGCCACGT ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAGTCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCA ] [-] EMBL CD159848 [ ACAGATCCCGGGCAACGCCACGT ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGT ] [-] EMBL CD122626 [ ACAGATCCC CGCAACGCCACGT ACCAATCCACATCGCTTCAATGTTACGTACGAATCACTTAATCACCGTCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAA TTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCA ] [-] EMBL CD133007 [ TCCC GGCAACGCCACGT ACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACG ] consensusID : consensus_9907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [AAGAGTGAATGATTGAATAGGAAGCAGGAGTGTATGGATGGTGCTTTTGATTGTGTTTGTGTTGCTAATTCTTACTACTGATATTGTTGATAATAATAATGACAGTGACTGATTGTTGGTGTTCGGTATTGTTGTAAGTGTGATTGAATTAGTGTTATGATTGAAATGTAGTGACACTGTTTCGTAGTTGTGTGCTACCGTAGTAGTATTTGTTGTTGTTGTTGTTGTTGTTGATTATGATGATGACGGTGGTGTTGTTATTGTTGTTTCGTTGGTATTGTTTGGTGGTTGTGGCGCATAAGTTGAGTTGATGTTTATGTTGGTGGAAATGCGTGTATCGGAATGAAGGAGTGTGTACATGGTGAGTCAATTGAG] [+] EMBL CD146122 [AAGAGTGAATGATTGAATAGGAAGCAGGAGTGTATGGATGGTGCTTTTGATTGTGTTTGTGTTGCTAATTCTTACTACTGATATTGTTGATAATAATAATGACAGTGACTGATTGTTGGTGTTCGGTATTGTTGTAAGTGTGATTGAATTAGTGTTATGATTGAAATGTAGTGACACTGTTTCGTAGTTGTGTGCTACCGTAGTAGTATTTGTTGTTGTTGTTGTTGTTGTTGATTATGATGATGACGGTGGTGTTGTTATTGTTGTTTCGTTGGTATTGTTTGGTGGTTGTGGCGCATAAGTTGAGTTGATGTTTATGTTGGTGGAAATGCGTGTATCGGAATGAAGGAGTGTGTACATGGTGAGTCAATTGAG] consensusID : consensus_9907#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 351 fasta sequence [AGATCCCGGCAACGCCACGTACCGATGCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAAGAATATTCTGAGTCTCTGTAGTGTTTCTATGTCATGCTGTGTAGTAGTA] [-] EMBL CD098349 [AGATCCCGGCAACGCCACGTACCGATGCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAAGAATATTCTGAGTCTCTGTAGTGTTTCTATGTCAT ] [-] EMBL CD191360 [ CCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAAGAATATTCTGAGTCTCTGTAGTGTTTCTATGTCATGCTGTGTAGTAGTA] consensusID : consensus_9907#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [ACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAGCGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAACATGTACACACTCCTTCATTCCGATACACGCGTTTCCACCAACATAAACATCAACT] [+] EMBL CD187253 [ACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAGCGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTACGTACGAACATGTACACACTCCTTCATTCCGATACACGCGTTTCCACCAACATAAACATCAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9907#0 CATCGTACACCTCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTC 60 consensus_9907#3 --------------------------------------ACGCCACGTACCAATCCACTTC 22 consensus_9907#2 ---------------------------AGATCCCGGCAACGCCACGTACCGATGCACTTC 33 consensus_9907#1 ------------------AAGAGTGAATGATTGAATAGGAAGCAGGAGTGTATGGATGGT 42 ** * ** * consensus_9907#0 GCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGC 120 consensus_9907#3 GCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGC 82 consensus_9907#2 GCTTCAATGTTACGTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGC 93 consensus_9907#1 GCTTTTG-ATTGTGTTTGTGTTGCT-AATTCTTACTACTGA---TATTGTTGATAATAAT 97 **** ** ** * * ** *** * * * * ** *** consensus_9907#0 AACGCCACGTACCAATCCACTTCGCTTCAATGTTAC-GTACGAATCACTTAATCACCATC 179 consensus_9907#3 AGCGCCACGTACCAATCCACTTCGCTTCAATGTTAC-GTACGAATCACTTAATCACCATC 141 consensus_9907#2 AACGCCACGTACCAATCCACTTCGCTTCAATGTTAC-GTACGAATCACTTAATCACCATC 152 consensus_9907#1 AATGACAGTGACTGATT-GTTGGTGTTCGGTATTGTTGTAAGTGTGATTGAATTAGTGTT 156 * * ** ** ** * *** * ** *** * * * * *** * * consensus_9907#0 AGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTAC 239 consensus_9907#3 AGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTAC 201 consensus_9907#2 AGTCAAACCATCACAGATCCCGGCAACGCCACGTACCAATCCACTTCGCTTCAATGTTAC 212 consensus_9907#1 AT---GAT--TGAAATGTAGTGACACTGTTTCGTAGTTGTGTGCT--ACCGTAGTAGTAT 209 * * * * * * * ** * **** * ** * * * ** consensus_9907#0 GTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACC 299 consensus_9907#3 GTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACC 261 consensus_9907#2 GTACGAATCACTTAATCACCATCAGTCAAACCATCACAGATCCCGGCAACGCCACGTACC 272 consensus_9907#1 TTGTTGTTGTTGTTGTTGTTGTTGATTATGATGATGACGGTGGTGTTGTTATTGTTGTTT 269 * * * * * * * * * * consensus_9907#0 AATCCACTTCGCTTCAATGTTACGTACGAATTAAT-CACCATCAGTCAAACCATCACAGA 358 consensus_9907#3 AATCCACTTCGCTTCAATGTTACGTACGAACATGTACACACTCCTTCATTCCGATACACG 321 consensus_9907#2 AATCCACTTCGCTTCAATGTTACGTACGAAGAA---TATTCTGAGTC--TCTGTAGTGTT 327 consensus_9907#1 CGTTGGTATTGTTTGGTGGTTGTGGCGCATAAGTTGAGTTGATGTTTATGTTGGTGGAAA 329 * * * ** *** * * * consensus_9907#0 TCCCGGCAACGCCACGTACCAATCCACTTG---------------- 388 consensus_9907#3 CGTTTCCACCAACATAAAC--ATCAACT------------------ 347 consensus_9907#2 TCTATGTCATGCTGTGTAGTAGTA---------------------- 351 consensus_9907#1 TGCGTGTATCGGAATGAAGGAGTGTGTACATGGTGAGTCAATTGAG 375 * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||