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Schistosoma mansoni
cluster # 9911 cluster # 9911       Sequences # 12       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9911#0 length = 784 sequences # 2  
consensus_9911#1 length = 774 sequences # 5  
consensus_9911#2 length = 717 sequences # 1  
consensus_9911#3 length = 627 sequences # 3  
consensus_9911#4 length = 163 sequences # 1  

consensusID : consensus_9911#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 784
fasta sequence
                              [TCCGAGGCCANAATTCGGCACGAGGGCAATGGAGGGCATTTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTATGCTTTCGGCCGAAAGAATAGCGAAGTATTTAACGGGAAAGCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTATGTTATGTATTATAGTCATCTAACTGTTTCCTTTTTTAAGGGTTGTGTTGTCATTNTAAAACATANAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGGGAGTC-AAGATTTAC-AATGGNANNAGA-TAGATNTATACTGTAA--ACATACTNNG]

[+] EMBL CD082035             [TCCGAGGCCANAATTCGGCACGAGGGCAATGGAGGGCATTTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTATGCTTTCGGCCGAAAGAATAGCGAAGTATTTAACGGGAAAGCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTATGTTATGTATTATAGTCATCTAACTGTTTCCTTTTTTAAGGGTTGTGTTGTCATTNTAAAACATANAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGGGAGTC AAGATTTAC AATGGNANNAGA TAGATNTATACTGTAA  ACATACTNN ]
[-] EMBL CD077216             [                                                                                                                                                        GACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTATGTTATGTATTATAGTCATCTAACTGTTTCCTTTTTTAA GGTTGTGTTGTCATTTTAAAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAG TTCAAAGAATTACAAATGG AAAAGATTAGATTTATACTGTAAAGACATACTttg]


>consensus_9911#0 TCCGAGGCCANAATTCGGCACGAGGGCAATGGAGGGCATTTGCTAGAGAATGGCTTATTT ATGACGCCTTCATGCAGTGCCCTATGCTTTCGGCCGAAAGAATAGCGAAGTATTTAACGG GAAAGCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCGTGATCA ATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTA TACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTG ACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTA AATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACA TTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGG ATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATC ATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATG TTAATATTGTATTACTGCATATCTGTATGTTATGTATTATAGTCATCTAACTGTTTCCTT TTTTAAGGGTTGTGTTGTCATTNTAAAACATANAACTAACATTGATAGTCGTTTTTAGCT AATGAGTGTGGGGAGTCAAGATTTACAATGGNANNAGATAGATNTATACTGTAAACATAC TNNG



consensusID : consensus_9911#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 774
fasta sequence
                              [CACTCCGGGGAAATCAGTTTCTGCGCTACTCTAGTAGCTGA-TGTCACATTGGA-GGGTTTTGCAATGGAGGGCA-TTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTATGCTTTCGGCCGAAAGAATAGCGAAGTATTT--CGG---GA-AAGCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTTGTGTTGTCATTTTAAAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAGTTCAAAGAATTACAAATGGAAAAGATTAGATTTATACTGTAAAACATACTTTG]

[+] EMBL CD185975             [CACTCCGGGGAAATCAGTTTCTGCGCTACTCTAGTAGCTGA TGTCACATTGGA GGGTTTTGCAATGGAGGGCATTTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTATGCTTTCGGCCGAAAGAATAGCGAAGTATTTAACGG   GA AAGCATATTCGATACTATGACCCTAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD128267             [                             TCTAGTAGCTGACTGTCACATTGGACGGGTTTTGCAACGGAGGGCA TTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTATGCTTGCGGCCGAAAGAATAGCGAAGTATTTAACGG   GA AAGCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACC                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD083186             [                                                                                                                                               cAAGNATTT  CGGCACGAGGCGCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTTGTGTTGTCATTTTAAAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAGTTCAAAGAATTACAAATGGAAAAGATTAGATTTATACTGTANAACATACTTT ]
[-] EMBL CD076760             [                                                                                                                                                                                                 GACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTTGTGTTGTCATTTTAAAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAGTTCAAAGAATTACAAATGGAAAAGATTAGATTTATACTGTAAAACATACTTTG]
[-] EMBL CD076772             [                                                                                                                                                                                                                           CAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTTGTGTTGTCATTTTAAAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAGTTCAAAGAATTACAAATGGAAAAGATTAGATTTATACTGTAAAACATACTTTG]


>consensus_9911#1 CACTCCGGGGAAATCAGTTTCTGCGCTACTCTAGTAGCTGATGTCACATTGGAGGGTTTT GCAATGGAGGGCATTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTATG CTTTCGGCCGAAAGAATAGCGAAGTATTTCGGGAAAGCATATTCGATACTACGACCCTAG TGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAA TAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGT TGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAAC TAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATA CCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACC ACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATT TCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGAT GAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTTG TGTTGTCATTTTAAAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGA GTTCAAAGAATTACAAATGGAAAAGATTAGATTTATACTGTAAAACATACTTTG



consensusID : consensus_9911#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 717
fasta sequence
                              [CTCGCGGCCAANAATTCGGCACGAGGGTCACATTGGAGGGTTTTGCAATGGAGGGCATTTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTATGCTTTCGGCCGAAAGAATAGCGAAGTATTTAACGGGAAAGCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACNNNNNNNNNNNNNNNNTATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTATACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTATGTTATGTATTATAGTTATCTAACTGTTTCCTTTTTTAAGGTTGTGTTGTCATTTTAAAACATAAAACTAACATTGATTACAAATGGAAAGATTAGA]

[+] EMBL CD080874             [CTCGCGGCCAANAATTCGGCACGAGGGTCACATTGGAGGGTTTTGCAATGGAGGGCATTTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTATGCTTTCGGCCGAAAGAATAGCGAAGTATTTAACGGGAAAGCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACNNNNNNNNNNNNNNNNTATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTATACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTATGTTATGTATTATAGTTATCTAACTGTTTCCTTTTTTAAGGTTGTGTTGTCATTTTAAAACATAAAACTAACATTGATTACAAATGGAAAGATTAGA]


>consensus_9911#2 CTCGCGGCCAANAATTCGGCACGAGGGTCACATTGGAGGGTTTTGCAATGGAGGGCATTT GCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTATGCTTTCGGCCGAAAGA ATAGCGAAGTATTTAACGGGAAAGCATATTCGATACTACGACCCTAGTGCCGACTTTGGA AATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGACAATACACTATACATA CAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCA CTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACN NNNNNNNNNNNNNNNTATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGC CAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTC TACTGAAGAACTTAATGAATTTCCTATACTTTTCGATTGGCCCGAAGATTATCATGTTGC TCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATAT TGTATTACTGCATATCTGTATGTTATGTATTATAGTTATCTAACTGTTTCCTTTTTTAAG GTTGTGTTGTCATTTTAAAACATAAAACTAACATTGATTACAAATGGAAAGATTAGA



consensusID : consensus_9911#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 627
fasta sequence
                              [GGCTCGAGGACCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCCTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTTGTGTTGTCATTNTAAAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAGTTCAAAGAATTACAAATGGAAAAGATTAGATTTATACTGTAAAACATACTTN]

[+] EMBL CD083197             [GGCTCGAGGACCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCCTGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTGTTGTGTTGTCATTNTAAAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAGTTCAAAGAATTACAAATGGAAAAGATTAGATTTATACTGTAAAACATACTTN]
[-] EMBL CD201169             [                                                                                                                                                                                                               TAGAAACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATT                                                                                                                                                                                                            ]
[-] EMBL CD151743             [                                                                                                                                                                                                                                       ATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGGAGCTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGTATCGTAATGACATGTT                                                                                                                                           ]


>consensus_9911#3 GGCTCGAGGACCATATTCGATACTACGACCCTAGTGCCGACTTTGGAAATCATGTTGTCC TGATCAATTCTAGACACATTGCTGCAAAAGACAATAGTCGATATTGGAAACGGTTCTTAT ACACTATACATACAAGGTTCCCTGTGAATCGCGTTGAAGAAACAATGGAGGAAATTCACC GGCGTGACCCCACTGAGGTTATTCGTTTAGAAACTAAAGCCGTCTTACGAAATAATGAGT CTCGTAAATACCAATTATCTCGTCTTCATATATACCCTGAAAATATTGAAACTATTCCCA AGGACATTATTGCCAATATTTCAGGAGTAATACCACAAGTCATGAAAGTTCCAAAACGCC TTGAGGATTACTCTACTGAAGAACTTAATGAATTTCCTAAACTTTTCGATTGGCCCGAAG ATTATCATGTTGCTCCGCTTAGTCCGATGGCGATGAAGCTGAAAACGGGAGAATCAAAAT GACATGTTAATATTGTATTACTGCATATCTGTTGTGTTGTCATTNTAAAACATAAAACTA ACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAGTTCAAAGAATTACAAATGGAAAAGA TTAGATTTATACTGTAAAACATACTTN



consensusID : consensus_9911#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence
                              [TAGTCTCGTAAATCAATTATCTCGTCTTCATATATTCTCTGAAAATATTGAAACTATCCCAAGGACATTATGCCAATATTTCAGGAGTATACACAGTCATGAAGTCCAAACGCCTTAGGATTACCTCGAAGAACTTATAATTCTAACTTTCGATGGCCGAAGA]

[+] EMBL SM109                [TAGTCTCGTAAATCAATTATCTCGTCTTCATATATTCTCTGAAAATATTGAAACTATCCCAAGGACATTATGCCAATATTTCAGGAGTATACACAGTCATGAAGTCCAAACGCCTTAGGATTACCTCGAAGAACTTATAATTCTAACTTTCGATGGCCGAAGA]


>consensus_9911#4 TAGTCTCGTAAATCAATTATCTCGTCTTCATATATTCTCTGAAAATATTGAAACTATCCC AAGGACATTATGCCAATATTTCAGGAGTATACACAGTCATGAAGTCCAAACGCCTTAGGA TTACCTCGAAGAACTTATAATTCTAACTTTCGATGGCCGAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9911#1      CACTCCGGGGAAATCAGTTTCTGCGCTACTCTAGTAGCTGATGTCACATTGGAGGGTTTT 60
consensus_9911#3      ------------------------------------------------------------
consensus_9911#4      ------------------------------------------------------------
consensus_9911#0      -----------------------------------TCCGAGGCCANAATTCGGCACGAGG 25
consensus_9911#2      ----------------CTCGCGGCCAANAATTCGGCACGAGGGTCACATTGGAGGGTTTT 44
                                                                                  

consensus_9911#1      GCAATGGAGGGCATT-GCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTAT 119
consensus_9911#3      ------------------------------------------------------------
consensus_9911#4      ------------------------------------------------------------
consensus_9911#0      GCAATGGAGGGCATTTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTAT 85
consensus_9911#2      GCAATGGAGGGCATTTGCTAGAGAATGGCTTATTTATGACGCCTTCATGCAGTGCCCTAT 104
                                                                                  

consensus_9911#1      GCTTTCGGCCGAAAGAATAGCGAAGTATTT--CGGGAAAGCATATTCGATACTACGACCC 177
consensus_9911#3      --------------------------GGCT--CGAGGAC-CATATTCGATACTACGACCC 31
consensus_9911#4      ------------------------------------------------------------
consensus_9911#0      GCTTTCGGCCGAAAGAATAGCGAAGTATTTAACGGGAAAGCATATTCGATACTACGACCC 145
consensus_9911#2      GCTTTCGGCCGAAAGAATAGCGAAGTATTTAACGGGAAAGCATATTCGATACTACGACCC 164
                                                                                  

consensus_9911#1      TAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGA 237
consensus_9911#3      TAGTGCCGACTTTGGAAATCATGTTGTCCTGATCAATTCTAGACACATTGCTGCAAAAGA 91
consensus_9911#4      ------------------------------------------------------------
consensus_9911#0      TAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGA 205
consensus_9911#2      TAGTGCCGACTTTGGAAATCATGTTGTCGTGATCAATTCTAGACACATTGCTGCAAAAGA 224
                                                                                  

consensus_9911#1      CAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCG 297
consensus_9911#3      CAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCG 151
consensus_9911#4      ------------------------------------------------------------
consensus_9911#0      CAATAGTCGATATTGGAAACGGTTCTTATACACTATACATACAAGGTTCCCTGTGAATCG 265
consensus_9911#2      CAATA-------------------------CACTATACATACAAGGTTCCCTGTGAATCG 259
                                                                                  

consensus_9911#1      CGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGA 357
consensus_9911#3      CGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGA 211
consensus_9911#4      ------------------------------------------------------------
consensus_9911#0      CGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGA 325
consensus_9911#2      CGTTGAAGAAACAATGGAGGAAATTCACCGGCGTGACCCCACTGAGGTTATTCGTTTAGA 319
                                                                                  

consensus_9911#1      AACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATAT 417
consensus_9911#3      AACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATAT 271
consensus_9911#4      -------------------------TAGTCTCGTAAAT--CAATTATCTCGTCTTCATAT 33
consensus_9911#0      AACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATACCAATTATCTCGTCTTCATAT 385
consensus_9911#2      AACTAAAGCCGTCTTACGAAATAATGAGTCTCGTAAATA-CNNNNNNNNNNNNNNNNTAT 378
                                                ************  *                ***

consensus_9911#1      ATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAAT 477
consensus_9911#3      ATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAAT 331
consensus_9911#4      ATTCTCTGAAAATATTGAAACTAT-CCCAAGGACATTAT-GCCAATATTTCAGGAGTA-T 90
consensus_9911#0      ATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAAT 445
consensus_9911#2      ATACCCTGAAAATATTGAAACTATTCCCAAGGACATTATTGCCAATATTTCAGGAGTAAT 438
                      ** * ******************* ************** ****************** *

consensus_9911#1      ACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGA 537
consensus_9911#3      ACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGA 391
consensus_9911#4      AC-ACA-GTCATGAAG---TCCAAACGCCTT-AGGATTACCT---CGAAGAACTTA-TAA 140
consensus_9911#0      ACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGA 505
consensus_9911#2      ACCACAAGTCATGAAAGTTCCAAAACGCCTTGAGGATTACTCTACTGAAGAACTTAATGA 498
                      ** *** ********     * ********* ********      ********** * *

consensus_9911#1      ATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGC 597
consensus_9911#3      ATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGC 451
consensus_9911#4      ---TTCTAA--CTTTCGATGG--CCGAAGA------------------------------ 163
consensus_9911#0      ATTTCCTAAACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGC 565
consensus_9911#2      ATTTCCTATACTTTTCGATTGGCCCGAAGATTATCATGTTGCTCCGCTTAGTCCGATGGC 558
                         * ***    ******* *  *******                              

consensus_9911#1      GATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTG 657
consensus_9911#3      GATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTG 511
consensus_9911#4      ------------------------------------------------------------
consensus_9911#0      GATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTG 625
consensus_9911#2      GATGAAGCTGAAAACGGGAGAATCAAAATGACATGTTAATATTGTATTACTGCATATCTG 618
                                                                                  

consensus_9911#1      T--------------------------------------------TGTGTTGTCATTTTA 673
consensus_9911#3      T--------------------------------------------TGTGTTGTCATTNTA 527
consensus_9911#4      ------------------------------------------------------------
consensus_9911#0      TATGTTATGTATTATAGTCATCTAACTGTTTCCTTTTTTAAGGGTTGTGTTGTCATTNTA 685
consensus_9911#2      TATGTTA--------------------------------------TGTATTATAGTTATC 640
                                                                                  

consensus_9911#1      AAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAGTTCAAAGAATTA 733
consensus_9911#3      AAACATAAAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGAGTTCAAAGAATTA 587
consensus_9911#4      ------------------------------------------------------------
consensus_9911#0      AAACATANAACTAACATTGATAGTCGTTTTTAGCTAATGAGTGTGGGGAGTCAAGATTTA 745
consensus_9911#2      TAACTGTTTCCTTTTTTAAGGTTGTGTTGTCATTTTAAAACATAAAACTAACATTGATTA 700
                                                                                  

consensus_9911#1      CAAATGGAAAAGATTAGATTTATACTGTAAAACATACTTTG 774
consensus_9911#3      CAAATGGAAAAGATTAGATTTATACTGTAAAACATACTTN- 627
consensus_9911#4      -----------------------------------------
consensus_9911#0      CAA-TGGNANNAGATAGATNTATACTGTAAA-CATACTNNG 784
consensus_9911#2      CAAATGGAAA-GATTAGA----------------------- 717
                                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)