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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1566 fasta sequence
[ATGGCATTAAACTGAAGGATGTAAGGAACCTATATCNTGATGTTTATCATTAAGGGAATTAATATCATGCTTGTTGGGTCGGTCGACGAAATACCGATTTCCGAAACTCCTTGCTTGGATAATTCAAAAGTTGCTTATTCCACGGAAGACTCTATAAAACTACCACCTGGCCTCGTAAATCTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTGCGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGTTCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTTACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCATCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCTCTATCTATGATTTCCCGTGGCTTCGAACAACAAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACTACCCATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGCCAATCCCTCAAGCCAAACAAATACTTTCAAAAGTAAACCAGATTCTGTACAACCTGACCCATTCCATAATCCTGACTTGTACGAGCCTA--TTTTTCGCTGATGATCCCGGTTCGAATAACTCTGGGTACTACGAACTTCAAGGTGTTTTGAGCCACCAAGGTAGAACAAGTACCAGTGGGCATTATGTTGCTTGGGTGAAAAAACAAGGAATGTGGTTTAAATTTGATGACGATCGTGTCAGCCAGGTTACCTCAGAAGATATTTTGCGCTTATCTGGAGGTGGTGATTGGCATTGTGCATACATACTGTTATATGGACCTCACTTCATAAGGAAGAATGCATGCAACGATCCTTCTGGAAGTACCGTATGAAGTTCATAAATGCANAACAGACTTGTATGATTATGTACGCTCTAGATAATTGACAATTTCTGTTGAATAAACCCGTTTTTTAAACGTGGAACTTTTAAGACGCCGATCAGCGAAGCTGTTCGTTGTTAAAGTTTGTCATTATTTTCTTTCCATGAAATTGTGATAAT]
[-] EMBL CD180593 [ATGGCATTAAACTGAAGGATGTAAGGAACCTATATCNTGATGTTTATCATTAAGGGAATTAATATCATGCTTGTTGGGTCGGTCGACGAAATACCGATTTCCGAAACTCCTTGCTTGGATAATTCAAAAGTTGCTTATTCCACGGAAGACTCTATAAAACTACCACCTGGCCTCGTAAATCTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTGCGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGTTCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTTACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCATCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCTCTATCTATGATTTCCCGTGGCTTCGAACAACAAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCT ]
[+] EMBL AI067499 [ CCTCGTAAATCTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTGCGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGTTCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTTACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCATCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCTCTATCTATGATTTCCCGTGGCTTCGAACAACAAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTG ]
[+] EMBL AI067051 [ AAATCTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTGCGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGTTCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTTACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCATCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCT ]
[-] EMBL CD165772 [ AAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATGGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACTACCCATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGC ]
[+] EMBL CD184507 [ AGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATG ]
[+] EMBL CD130942 [ AGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACG ]
[-] EMBL CD165790 [ GATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAGATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACAACCAATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGC ]
[-] EMBL CD061775 [ ATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGGCTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATAAGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACTACCCATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGCCAATCCCTCAAGCCAAACAAATACTTTCAAAAGTAAACCAGATTCTGTACAACCTGACCCATTCCATAATCCTGACTTGTACGAGCCTA TTTTTCGCTGA ]
[+] EMBL CD152509 [ CTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGATCGGAATGCAG ]
[+] EMBL CD082895 [ TTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATAAATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGTACGCCTGAATTGCAACAGAAATTACTACCTATGCGTGAAAAACAGCGCCTTAAAGAAGATGAGGTGGCCAATCCCTCAAGCCAAACAAATACTTTCAAAAGTAAACCAGATTCTGTACAACCTGACCCATTCCAAAATCCTGACTTGTACGAGCCTAACTTTTTCGCTGATGATCCCGGTTCGAATAACTCTGGGTACTACGAACTTCAAGGTGTTTTGAGCCACCAAGGTAGAACAAGTACCAGTGGGCATTATGTTGCTTGGGTGAAAAAACAAGGAATGTGGTTTAAATTTGATGACGATCGTGTCAGCCAGGTTACCTCAGAAGATATTTTGCGCTTATCTGGAGGTGGTGATTGGCATTGTGCATACATACTGTTATATGGACCTCACTTCATAAGGAAGAATGCATGCAACGATCCTTCTGGAAGTACCGTATGAAGTTCATAAATGCANAACAGACTTGTATGATTATGTACGCTCTAGATAATT ]
[-] EMBL CD076479 [ TGCATGCAACGATCCTTTTGGAAGTACCGTATGAAGTTCATAAATGCAAAACAGACTTGTATGATTATGTACGCTCTAGATAATTGACAATTTCTGTTGAATAAACCCGTTTTTTAAACGTGGAACTTTTAAGACGCCGATCAGCGAAGCTGTTCGTTGTTAAAGTTTGTCATTATTTTCTTTCCATGAAATTGTGATAAT]
consensusID : consensus_9920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence
[GGGCCAGAATTCGGCACGAGGGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATNTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGAT]
[+] EMBL CD077870 [GGGCCAGAATTCGGCACGAGGGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCTCAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACTGAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATGCATCAAGATGTAAAGTATNTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACTAAGCATTCATCTTTGCTGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9920#0 ATGGCATTAAACTGAAGGATGTAAGGAACCTATATCNTGATGTTTATCATTAAGGGAATT 60
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 AATATCATGCTTGTTGGGTCGGTCGACGAAATACCGATTTCCGAAACTCCTTGCTTGGAT 120
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 AATTCAAAAGTTGCTTATTCCACGGAAGACTCTATAAAACTACCACCTGGCCTCGTAAAT 180
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 CTTGGCAACACTTGTTATATGAACGCTGCTGTCCAATTGCTTTTCTCAATTCCAGAATTG 240
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 CGTATAGCTTTGCAGATATGCCGTTTTCCCCAAACTTCACCGGATTCTCCGAATCTTGGT 300
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 TCCTTATGTGAAAGTTTGAAGTTTTTGTTCAATTCCCTAAGCAAAACTGAAAAACCGGTT 360
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 ACTCCTCTGCTCTTCTTGACTTGCTTGCACAGTGTTTGTCCGCAGTTCGCCGCACGTGCA 420
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 TCGTCTTCTGATGCAAGTAAATCCGCTCCAGGTGCTCTATCTATGATTTCCCGTGGCTTC 480
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 GAACAACAAGATGCTAGTGAATGTTGGACAGAGCTAATCAGAGCACTACAAAGTAGCAAG 540
consensus_9920#1 ----------------------------------------------------------GG 2
*
consensus_9920#0 ATTGATTCTCAAGTTTATGCGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCT 600
consensus_9920#1 GCCAGAATTCG-GCACGAGGGTCAACAGTGAGTTTGCCTCCAAGTTTTCTTACAACTTCT 61
** * * ****************************************
consensus_9920#0 CAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACT 660
consensus_9920#1 CAATGGAATCCTGTAGATAGATTTCTCACTGGTCAGTTATCCTGCAAACTTAGATGTACT 121
************************************************************
consensus_9920#0 GAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATG 720
consensus_9920#1 GAATCAGATGAACCCGAAACAGATAGTCTAGAAACATTTACTCAACTTTCTTGCTTCATG 181
************************************************************
consensus_9920#0 CATCAAGATGTAAAGTATTTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACT 780
consensus_9920#1 CATCAAGATGTAAAGTATNTGATTACTGGTATTCGAAATGGATTGACGGGAAATCTAACT 241
****************** *****************************************
consensus_9920#0 AAGCATTCATCTTTGCTGGATCGGAATGCAGTATATAAACGCGAGTCTCTTATTAGTCGG 840
consensus_9920#1 AAGCATTCATCTTTGCTGGAT--------------------------------------- 262
*********************
consensus_9920#0 CTTCCAGCTTACCTATGTATTCATTTTGTTCGTTTCTTCTACAAGGAAGATAAACAGATA 900
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 AATGCTAAGATTTTAAAGGATGTAAAATTTCCACTAACATTGGATATGCACGAATTTTGT 960
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 ACGCCTGAATTGCAACAGAAATTACTACCCATGCGTGAAAAACAGCGCCTTAAAGAAGAT 1020
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 GAGGTGGCCAATCCCTCAAGCCAAACAAATACTTTCAAAAGTAAACCAGATTCTGTACAA 1080
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 CCTGACCCATTCCATAATCCTGACTTGTACGAGCCTATTTTTCGCTGATGATCCCGGTTC 1140
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 GAATAACTCTGGGTACTACGAACTTCAAGGTGTTTTGAGCCACCAAGGTAGAACAAGTAC 1200
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 CAGTGGGCATTATGTTGCTTGGGTGAAAAAACAAGGAATGTGGTTTAAATTTGATGACGA 1260
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 TCGTGTCAGCCAGGTTACCTCAGAAGATATTTTGCGCTTATCTGGAGGTGGTGATTGGCA 1320
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 TTGTGCATACATACTGTTATATGGACCTCACTTCATAAGGAAGAATGCATGCAACGATCC 1380
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 TTCTGGAAGTACCGTATGAAGTTCATAAATGCANAACAGACTTGTATGATTATGTACGCT 1440
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 CTAGATAATTGACAATTTCTGTTGAATAAACCCGTTTTTTAAACGTGGAACTTTTAAGAC 1500
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 GCCGATCAGCGAAGCTGTTCGTTGTTAAAGTTTGTCATTATTTTCTTTCCATGAAATTGT 1560
consensus_9920#1 ------------------------------------------------------------
consensus_9920#0 GATAAT 1566
consensus_9920#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||