These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1310 fasta sequence [AACCTCAACGTATTGAACAGTTTTCAAAAGCTTCAGATAAATCCTCATCTGGTTTTATAAAATGGACTACAGATGCCGAAGCATGTGAAGCTTTGGCTTTATGTAATCATCAACCCATTAAAGATGAAGAATGTACATATCCGCTTACTATTAAGTTCGCATTCGCGAGTCCTAGTTTATCTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGA-GTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTCACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGTTTGGAAGTGTACAAGAAGCACGTAATGCAAAGCTCCATTTGAATGGTGCAGATATTTTCCCAGGATGTTGTACTCTAAAGGTAGACTATGCTCGTCCAGCTCGATTATCTGTGCCCAGGAATGATCAGGATAACTGGGACTTCGAGAAATGCGAACGTGACCCATTCTGCAA-TTTCAGGATGGTCATTACCAAAATTCGCTTCTCGGTTATATGGATGAGGGTCATTACGATTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATACCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTAAATGGTGCTCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCGTGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATCAGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGTACGAACTAGTAAGCAAGATGTCATTTTGGATGTTTCTAGTCCATTCCAGTTGCCTGACGGTTCTCCTTCTTTTAAGATTACAGNCAGGATCGNTATANCAGGTATACTAC] [+] EMBL CD112204 [AACCTCAACGTATTGAACAGTTTTCAAAAGCTTCAGATAAATCCTCATCTGGTTTTATAAAATGGACTACAGATGCCGAAGCATGTGAAGCTTTGGCTTTATGTAATCATCAACCCATTAAAGATGAAGAATGTACATATCCGCTTACTATTAAGTTTGCATTCGCGAGTCCTAGTTTATCTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGA GTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCG ] [-] EMBL CD123647 [ AAGCATGTGAAGCTTTGGCTTTATGTAGTCATCAACCCATTAAAGATGAAGAATGTACATATCCGTTTACTATTAAGTTCGCATTCGCGAGTCGTAGTTTATCTGTTGCCCCGATTCATGTtgaaa ] [-] EMBL CD112540 [ TCGCATTCGCGAGTCCTAGTTCATCTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGA GTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTCACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATGTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGT ] [-] EMBL CD112337 [ TTTATCTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGA GTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTCACAATTTACGATACCGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGT ] [+] EMBL CD112062 [ tgTGATGTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCG ] [+] EMBL CD189802 [ CAGTTTCAGCACATCAAAACACATAGTTCATCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTCACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGTTTGGAAGTGTACAAGAAGCACGTAATGCAAAGCTCCATTTGAATGGTGCAGATATTTTCCCAGGATGTTGTACTCTAAAGGTAGACTATGCTCGTCCAGCTCGATTATCTGTGC ] [+] EMBL CD153902 [ ATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAATGGTGGAGTTTGGAAGTGTACAAGTAGCACGTAATGCAAAGCTCCATTTGAATGGTGCAGATATTTTCCCAGGATGTTGTACTCTAAAGGTAGACTATGCTCGTCCAGCTCGATTATCTGTGCCCAGGAATGATCAGGATAACTGGGACTTCGAGAAATGCGAACGTGACCCATTCTGCAA TTTCAGGATGGTCATTACCAAAATTCGCTTCTCGGTTATATGGATGAGGGTCATTACGATTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATACCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTANATGGTGCTCANAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTC ATATTTTGTG ] [-] EMBL CD119172 [ GAATGATCAGGACAACTGGGACTTCGAGAAATGCGAACGTGACCCATTCTGCAATTTTCAGGATGGTCATTACCAAAATTCGCTTCTCGGTAATATGGATGAGGGTCATTACGATTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATACCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTAAATGGTGCTCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCGTGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATCAGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGTACGAACT ] [-] EMBL CD198595 [ TTACCAAAATTCGCTTCTCGGTTATATGGATGAGGGTCATTACGATTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATACCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTAAATGGTGCTCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCGTGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATCAGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGTACGAACTAGTAAGCAAGATGTCATTTTGGATG ] [+] EMBL CD094592 [ CCTGCACTAAATGGTGCTCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATATGAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCGTGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATCAGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGTACGAACTAGTAAGCAAGATGTCATTTTGGATGTTTCTAGTCCATTCCAGTTGCCTGACGGTTCTCCTTCTTTTAAGATTACAGNCAGGATCGNTATANCAGGTATACTAC] consensusID : consensus_9923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 514 fasta sequence [CAAGGGTGTCTGCAGCCGCTAATTACAAGCTCTCCGTTACCATGTCTGATATAGGCACAGGTTCAGGTTGTAAAAGAAGTCGACCAGAAGACTGGGGTGAGATTGATCCTTCCCCAGTTGTTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGAGTCTTATGGACGTATTCGCGACGTAACAATGATGCCTCAG-AAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATACAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCACTTTCAGCACATCAAAACACATAGGTCATCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTTACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGATATCC] [+] EMBL CD162877 [CAAGGGTGTCTGCAGCCGCTAATTACAAGCTCTCCGTTACCATGTCTGATATAGGCACAGGTTCAGGTTGTAAAAGAAGTCGACCAGAAGACTGGGGTGAGATTGATCCTTCCCCAGTTGTTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGAGTCTTATGGACGTATTCGCGACGTAACAATGATGCCTCAG AAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATACAAAGAAATCCCGAAGTGAAAATTCTGAATAGCCTGGTTCAAATCACTTTCAGCACATCAAAACACATAGGTCATCGAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCCTTCTGTTTACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAACATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGATATCC] [+] EMBL CD186043 [ TAATTACAAGCTCTCCGTTACCATGTCTGATAGAGGCACAGGTTCAGGTTGTAAAAGAAGTCGACCAGAAGACTGGGGTGAGATTGATCCTTCCCCAGTTGTTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCAAAGCATTTGAGTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAGCTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9923#0 AACCTCAACGTATTGAACAGTTTTCAAAAGCTTCAGATAAATCCTCATCTGGTTTTATAA 60 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 AATGGACTACAGATGCCGAAGCATGTGAAGCTTTGGCTTTATGTAATCATCAACCCATTA 120 consensus_9923#1 -------CAAGGGTGTCTGCAGCCGCTAATTACAAGCTCTCCGTTACCAT--GTCTGATA 51 * * ** * * ** *** * ** * *** * ** consensus_9923#0 AAGATGAAGAATGTACATATCCGCTTACTATTAAGTTCGCATTCGCGAGTCCTAGTTTAT 180 consensus_9923#1 TAGGCACAG---GTTCAGGTTGTAAAAGAAGTCGACCAGAAGACTGGGGTGAGATTGATC 108 ** ** ** ** * * * * * * * * ** * * consensus_9923#0 CTGCTGAACCGATTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCA 240 consensus_9923#1 CTTCCCCAGTTGTTCATGTCCGTGGTCTACCGAGACATAGTGTGGAATTTGATGTCGTCA 168 ** * * ************************************************ consensus_9923#0 AAGCATTTGAGTCTTATGGACGTATTCGTGACGTAACAATGATGCCTCAGAAAAAACAAG 300 consensus_9923#1 AAGCATTTGAGTCTTATGGACGTATTCGCGACGTAACAATGATGCCTCAGAAAAA-CAAG 227 **************************** ************************** **** consensus_9923#0 CTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATAGAAAGAAATCCCGAAG 360 consensus_9923#1 CTTTGGTTGAGTTTGAAGATATATCATCAGCTGAAGCTCTTATACAAAGAAATCCCGAAG 287 ******************************************** *************** consensus_9923#0 TGAAAATTCTGAATAGCCTGGTTCAAATCAGTTTCAGCACATCAAAACACATAGTTCAGC 420 consensus_9923#1 TGAAAATTCTGAATAGCCTGGTTCAAATCACTTTCAGCACATCAAAACACATAGGTCATC 347 ****************************** *********************** *** * consensus_9923#0 GAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCC 480 consensus_9923#1 GAGCTGCAAATAGAGTTCCTACCGATGAACAAAGTTCGCTTTCAGCAGATAATCATATCC 407 ************************************************************ consensus_9923#0 TTCTGTTCACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAA 540 consensus_9923#1 TTCTGTTTACAATTTACGATACTGATCGTCCTATAACTGTTGAAACAATTTATCGAATAA 467 ******* **************************************************** consensus_9923#0 CATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGAAATCCCAGGTTCAAGCAA 600 consensus_9923#1 CATTTTCGTACGGTAGTGTCCTTCGAATAGTCATTTTTCGGATATCC------------- 514 ****************************************** **** consensus_9923#0 TGGTGGAGTTTGGAAGTGTACAAGAAGCACGTAATGCAAAGCTCCATTTGAATGGTGCAG 660 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 ATATTTTCCCAGGATGTTGTACTCTAAAGGTAGACTATGCTCGTCCAGCTCGATTATCTG 720 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 TGCCCAGGAATGATCAGGATAACTGGGACTTCGAGAAATGCGAACGTGACCCATTCTGCA 780 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 ATTTCAGGATGGTCATTACCAAAATTCGCTTCTCGGTTATATGGATGAGGGTCATTACGA 840 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 TTACGAACATCCTTATGGGCAGTATCCTTACGAAAATTCAAACGATTACGGACACCCATA 900 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 CCCCTCAGAAAGTAAAAACATACCTGTGGGACCTCACAATATTCCTGCACTAAATGGTGC 960 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 TCAAAATAGGAATAGAAATTCTAACTCCACGGCAGTGGTTATGCTGTACAATATTGATAT 1020 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 GAAGAAAATGAACTGTGATCGCGTATTCAATATTTTGTGTATTTATGGCAACGTCATCCG 1080 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 TGTTAAATTTCTCCGTACTAAAGAAGGTTCAGCTATGGTTGAAATGGGCGATGTTGAATC 1140 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 AGCTACCCGCCTTATCCGAAATCTGTCAGGTGTTTCGTTTATGGGCAACCAGTTAATGGT 1200 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 ACGAACTAGTAAGCAAGATGTCATTTTGGATGTTTCTAGTCCATTCCAGTTGCCTGACGG 1260 consensus_9923#1 ------------------------------------------------------------ consensus_9923#0 TTCTCCTTCTTTTAAGATTACAGNCAGGATCGNTATANCAGGTATACTAC 1310 consensus_9923#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||