These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1021 fasta sequence [AAAGTATATCAGAATTTTTGGAATAATTAATTGTCTGTACACAATATCTCAGGAAAAATGAGTTATTCGTGTTGGTCTTCATCCTCTCCAGGGCACTGTTCTAAAAGTTCAAATTGATTTGGGTACTGTAGGCTACACCAAAAGCAATAATTATGTCGATTTCGTAAATAATCCAAGAGTTGTATGAAATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC---AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATCTTTGTAAGCCATTTGTATTTGTTGTTCGAGGTTTTTTCTAAATATCATCCGTTCATTTTTTTCAGACGTGAAACCTAGGCCTTCACGACCCTGAGGGATTTCAATAGAAACAGGATCAGCTATCCCAGTTGCATTTTTTCCCAAACCTTTACCCGGAACGTATCCCATTTTTGAAAGTAGGCTGAAACCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTTCCTTGAGGTGGTGGATTTCCTTTTCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGAGCATCTCGTGATACGAATAATCCGGGTTTTACATCTTCTATTTCATTCAGGATAGCATCAGACATGTAGTCAACCTCATCATCCATCCCAACACTTCCAAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATCAGAAATCCCGAAGTATCCACAATCTTGAATCCCACCTCGAAAC] [+] EMBL CD073271 [AAAGTATATCAGAATTTTTGGAATAATTAATTGTCTGTACACAATATCTCAGGAAAAATGAGTTATTCGTGTTGGTCTTCATCCTCTCCAGGGCACTGTTCTAAAAGTTCAAATTGATTTGGGTACTGTAGGCTACACCAAAAGCAATAATTATGTCGATTTCGTAAATAATCCAAGAGTTGTATGAAATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCA ] [+] EMBL CD096898 [ ACTGTTCTAAAAGTTCAGATTGATTTGGGTACTGTAGGCTACACCAAAAGCAATAATTATGTCGATTTCGTAAATAATCCAAGAGTTGTATGAAATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAACAGGAGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATCTTTGTAAGCCATTTGTATTTGTTGTTCGAGGTTTTTTCTAAATATCATCCGTTCATTTTTTTCAGACGTGAAACCTAGGCCTTCACGACCCTGAGGGATTT ] [+] EMBL CD196809 [ ATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTTACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCAT ] [-] EMBL CD140666 [ TTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATT ATC ] [-] EMBL CD196995 [ TTCTTTNGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCGGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATC ] [-] EMBL CD197092 [ TTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTGACCATTATCAATGACTTCAGTTGGAACAAGATCAAC AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATC ] [-] EMBL CD197101 [ TTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTAGCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGTACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCATTATCAATGACTTCAGTTGGTACAAGATCAAC AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATC ] [-] EMBL AI067535 [ CATTTACCATTATCAATGACTTCAGTTGGAACAAGATCAAC AGGCCAGAATGATTCGTGAACTGGATTTCCGATAAGTTCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGTCGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATCTTTGTAAGCCATTTGTATTTGTTGTTCGAGGTTTTTTCTAAATATCATCCGTTCATTTTTTTCAGACGTGAAACCTAGGCCTTCACGACCCTGAGGGATTTCAATAGAAACAGGATCAGCTATCCCAGTTGCATTTTTTCCCAAACCTTTACCCGGAACGTATCCCATTTTTGAAAGTAGGCTGAAACCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTTCCTTGAGGTGGTGGATTTCCTTTTCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGAGCATCTCGTGATACGAATAATCCGGGTTTTA ] [+] EMBL CD156285 [ ATCCCATTTTTGAAAGTAGGCTGAAACCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTACCTTGAGGTGGTGGATTTCCTTTTCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGAGCATCTCGTGATACGAATAATCCGGGTTTTACATCTTCTATTTCATTCAGGATAGCATCAGACATGTAGTCAACCTCATCATCCATCCCAACACTTCCAAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATCAGAAATCCCGAAGTATCCACAATCTTGAATCCCACCTCGAAAC] [+] EMBL CD156419 [ ATCCCATTTTTGAAAGTAGGCTGAAACCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTTCCTTGAGGTGGTGGATTTCCTTTTCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGAGCATCTCGTGATACGAATAATCCGGGTTTTACATCTTCTATTTCATTCAGGATAGCATCAGACATGTAGTCAACCTCATCATCCATCCCAACACTTCCAAATT ] consensusID : consensus_9924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 396 fasta sequence [AAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATTGTATGTTATTTGGACCACAGCAGCCGGCAGAGAACTAGAGAATCTGATTACACAAGACAGCAGGTAACTACATTCCAATTGCATTTGTCATGCCTCTAATCTCTACAAGTTGCTACAAAGGTTCATATTTGGGCTTAAATTAAGCAAGTATTTTGGACAAAGCCCACGAAATTTTCGGTAACCGTTTAGAAATTTACATTTCGCGATAAAATTCGAAAACATTGTTCTGATATGCCCTTTGTATTCATTTAAACGTCAATGGATTTGTCTCTGAGTTTTGACTTACTGCAATCAGATAAATAAACGTGAAAACCCTAGAATTCTCAAGGATTGAAATTGGATGTGTGACAATT] [+] EMBL CD190849 [AAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATTGTATGTTATTTGGACCACAGCAGCCGGCAGAGAACTAGAGAATCTGATTACACAAGACAGCAGGTAACTACATTCCAATTGCATTTGTCATGCCTCTAATCTCTACAAGTTGCTACAAAGGTTCATATTTGGGCTTAAATTAAGCAAGTATTTTGGACAAAGCCCACGAAATTTTCGGTAACCGTTTAGAAATTTACATTTCGCGATAAAATTCGAAAACATTGTTCTGATATGCCCTTTGTATTCATTTAAACGTCAATGGATTTGTCTCTGAGTTTTGACTTACTGCAATCAGATAAATAAACGTGAAAACCCTAGAATTCTCAAGGATTGAAATTGGATGTGTGACAATT] [+] EMBL CD190880 [AAATTTTATTTATATTTGACAAATCGGAGTCATCACCCTTATTGTATGTTATTTGGACCACAGCAGCCGGCAGAGAACTAGAGAATCTGATTACACAAGACAGCAGGTAACTACATTCCAATTGCATTTGTCATGCCTCTAATCTCTACAAGTTGCTACAAAGGTTCATATTTGGGCTTAAATTAAGCAAGTATTTTGGACAAAGCCCACGAAATTTTCGGTAACCGTTTAGAAATTTACATTTCGCGATAAAATTCGAAAACATTGTTCTGATATGCCCTTTGTATTCATTTAAACGTCAATGGATTTGTCTCTGAGTTTTGACTTACTGCAATCAGATAAATAAACGTGAAAACCCTAGAATTCTCAAGGATTGAAATTGGATGTGTGACAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9924#0 AAAGTATATCAGAATTTTTGGAATAATTAATTGTCTGTACACAATATCTCAGGAAAAATG 60 consensus_9924#1 ------------------------------------------------------------ consensus_9924#0 AGTTATTCGTGTTGGTCTTCATCCTCTCCAGGGCACTGTTCTAAAAGTTCAAATTGATTT 120 consensus_9924#1 ------------------------------------------------------------ consensus_9924#0 GGGTACTGTAGGCTACACCAAAAGCAATAATTATGTCGATTTCGTAAATAATCCAAGAGT 180 consensus_9924#1 ------------------------------------------------------------ consensus_9924#0 TGTATGAAATTCTTTTGGATAGAGGTGTAGTCACAATTCGCATGCTTTGAGTCCAGTTTA 240 consensus_9924#1 ------------------------------------------------AAATTTTATTTA 12 * * **** consensus_9924#0 GCTAAATCATTATCTGGGAAGTCTTCGTTCACATCATCTTCCTGAGGCAGAACAGTACGT 300 consensus_9924#1 TATTTGACAA-ATCGGAGTCATCACCCTTATTGTATGTTATTTGGACCACAGCAGCCGGC 71 * ** *** * * ** * ** * * ** ** * *** * consensus_9924#0 ACAGGAAGTCTGTCTTTAACAGACTTAAAACCATTCGAACTGATTGATCCACATTTACCA 360 consensus_9924#1 AGAGAACTAGAGAATCTGATT-ACACAAGACAGC---AGGTAACTACATTCCAATTGCAT 127 * ** * * * * * ** ** ** * * * * ** ** * consensus_9924#0 TTATCAATGACTTCAGTTGGAACAAGATCAACAGGCCAGAATGATTCGTGAACTGGATTT 420 consensus_9924#1 TTGTCA-TGCCTCTAATCTCTACAAGTT------GCTACAAAGGTTCAT-ATTTGGGCTT 179 ** *** ** ** * * ***** * ** * ** * *** * * *** ** consensus_9924#0 CCGATAAGT---TCCTTCAAATCCAGATCTCGACATATCCGACGGGCAACATCCAGTTGT 477 consensus_9924#1 AAATTAAGCAAGTATTTTGGACAAAGCCCACGAAATTTTCGGTAACCGTTTAGAAATTTA 239 **** * ** * ** * *** ** * ** * * ** consensus_9924#0 CGGTTCAAACGGTTCTGTCGAAATCTCACGGCCATAGTGCTTCGGAATTCATCTTTGTAA 537 consensus_9924#1 CATTTCGCGATAAAATTCGAAAACATTGTTCTGATATGCCCTTTGTATTCAT--TTAAAC 297 * *** * *** * *** * * * ****** ** * consensus_9924#0 GCCATTTGTATTTGTTGTTCGAGGTTTTTTCTAAATATCATCCGTTCATTTTTTTCAGAC 597 consensus_9924#1 GTCAATGG-ATTTGTC--TCTGAGTTTTGACTTACTGCAATCAGATAAAT------AAAC 348 * ** * * ****** ** ***** ** * * *** * * * * * ** consensus_9924#0 GTGAAACCTAGGCCTTCACGACCCTGAGGGATTTCAATAGAAACAGGATCAGCTATCCCA 657 consensus_9924#1 GTGAAAACC------CTAGAATTCTCAAGGATTGAAATTGGATGTGTGACAATT------ 396 ****** * * * ** * ***** *** * * * ** * consensus_9924#0 GTTGCATTTTTTCCCAAACCTTTACCCGGAACGTATCCCATTTTTGAAAGTAGGCTGAAA 717 consensus_9924#1 ------------------------------------------------------------ consensus_9924#0 CCCTTATTTTCAGGCCCAACCTTTTTCTTTAAGCCTTCCTTGAGGTGGTGGATTTCCTTT 777 consensus_9924#1 ------------------------------------------------------------ consensus_9924#0 TCCGACTTGGAGAGACATTTGTTTTTCCGTCGATTCGCCTCTACTGTACGCTGTCGTTGA 837 consensus_9924#1 ------------------------------------------------------------ consensus_9924#0 GCATCTCGTGATACGAATAATCCGGGTTTTACATCTTCTATTTCATTCAGGATAGCATCA 897 consensus_9924#1 ------------------------------------------------------------ consensus_9924#0 GACATGTAGTCAACCTCATCATCCATCCCAACACTTCCAAATTTTATTTATATTTGACAA 957 consensus_9924#1 ------------------------------------------------------------ consensus_9924#0 ATCGGAGTCATCACCCTTATCAGAAATCCCGAAGTATCCACAATCTTGAATCCCACCTCG 1017 consensus_9924#1 ------------------------------------------------------------ consensus_9924#0 AAAC 1021 consensus_9924#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||