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Schistosoma mansoni
cluster # 9925 cluster # 9925       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9925#0 length = 1602 sequences # 5  
consensus_9925#1 length = 901 sequences # 5  
consensus_9925#2 length = 435 sequences # 1  
consensus_9925#3 length = 319 sequences # 1  

consensusID : consensus_9925#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1602
fasta sequence
                              [TCGTCCATCCTGTCCAACAGCTCTGGCAGCGTTGGCTCAAGCACTTTATGAGGTTAGCGGTGTTGCTCTT-GTCCGGAGAGTGTACAATCAACCAAGTGCTGCTAGACTAGGAGTTTTAACTCCAGAAATTCATGGTGATCAGATATCGCTCATGTATACTGATATAGCGTTTAGTGAAGATATTCGCGATCTGAAACTCCCAAGTTTACCAGTTTCCTGTGAGCCCTCGACTTCTACTACGGAATGTTTTGTTAAGTCTTCAAACACTATGAAATTGAGTAAAAATTGTCCATCTCAGGAACAGTTGTCAGCTATGGATTCTTTTATTAATTCCATGATGTTAAATTATTCAGATGGAAGC---GATGATGATGATAATGATAGCGGTGGTGTACTCAACAAGAGAGACGAAAACGACGTGGAAAATCCTTCATCAAGCAGGATCTTAAAAGTTCAACGGATATCAAACCCTTGGATTCAACGTTTCTTTGCCTGTCTTAGAAAACGGGGTCTTGATCCATCAGTACCACTTCCGATTTCAAAGCAATCAGATTCTTCTGATGTTTGGCTGTCACCTGAAATGTTTCCTGGTTTGGAGGAAATCATCACACANATCAATACAGATTCCGAAACTGCATCTCTAATTGAATCCCCGT-ATATTCTTCTTATTNCATTTCCACCTCTTCGTCCTGCTAGTGGTCCAGTAGATTTGACAGAAGAATTTTTGGCGAAAAGACGGCGTTTAACGGATGAAGAATCTTACACTACTTCTTCGTTCACGAAAGAAGTAGACAGTGGATATCCAACCGAACAACTGACCCCAATTTCGGAATTCCCTAGTACACCGGCGTCAAATTCCATTCAAATAAACTCAGTTCAGGATTTTGAAGACCTAATCTGCCAACAACAAACTGAAGTTGCTTGTAGACTTTTGGAGAAAGAAATAATTCGACTGGTGACCGATCCTTTCACTGCAACTTTATTGCGTCCAAAAGCTATCGCTTACCTGTTCGCTTATCGTAGGCGTTCTCAGCCAAGTAGAGAAATCGTCAATAATAGTAATAAAAACAATCATATTAATGATACTACATGCAACAGCAGCACATGTCATCTTGAAATTGCTCGAGCATATAACTCATTTATTCGTAGTTGGCGCCAGGATCTTATAGATCGTAATCTCCTCGGAAGTAGTGTCTTATCTCAACGTGCTTCTAATGATAGCAAGTTGTCGTTTTGGCTGGAAACAATTACACAAGGTTTCGGTCTTTTGTGCAATGAAGATATCCCAGAAATCGGAGTTAGTCAGTCAGAAAATCGTGAGTTTTTGAACTTGGAGGATATTGCAATGTCTCATTTTGCTGAAACAAAAAGTGATCAGCCTGTATCTCCCGACCGTGTTCTCAAAGTTGAGCATTTGATGGATGACACAGATTGAAATTTTCCGTTGTTGTTGTTGTTGTTGTTTTAATCGCTTACAATCACACATATTATGGGTGACCTATTTTCTTGATCATATCAGTCATATTTTGTAATCTATTTTCTTTCCTTCATAAAAGTTTTACGTTATTGATTGTATGTATATAGAGTAATTACACAATTAAATAC]

[+] EMBL CD162462             [TCGTCCATCCTGTCCAACAGCTCTGGCAGCGTTGGCTCAAGCACTTTATGAGGTTAGCGGTGTTGCTCTT GTCCGGAGAGTGTACAATCAACCAAGTGCTGCTAGACTAGGAGTTTTAACTCCAGAAATTCATGGTGATCAGATATCGCTCATGTATACTGATATAGCGTTTAGTGAAGATATTCGCGATCTGAAACTCCCAAGTTTACCAGTTTCCTGTGAGCCCTCGACTTCTACTACGGAATGTTTTGTTAAGTCTTCAAACACTATGAAATTGAGTAAAAATTGTCCATCTCAGGAACAGTTGTCAGCTATGGATTCTTTTATTAATTCCATGATGTTAAATTATTCAGATGGAAGC   GATGATGATGATAATGATAGCGGTGGTGTACTCAACAAGAGAGACGAAAACGACGTGGAAAATCCTTCATCAAGCAGGATCTTAAAAGTTCAACGGATATCAAACCCTTGGATTCAACGTTTCTTTGCCTGTCTTAGAAAACGGNGTCTTGATCCATCAGTACCACTTCCGATTTCAAAGCAATCAGATTCTTCTGATGTTTGGCTGTCACCTGAAATGTTTCCTGGTTTGGAGGAAATCATCACACANATCAATACAGATTCCGAAACTGCATCTCTAATTGAATCCCCGT ATATTCTTCTTATTNCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD162447             [ CGTCCATCCTGTCCAACAGCTCTGGCAGCGTGGGCTCAAGCACTNTATGAGGTANGCGGTG TGCTCTTNGTCCGGAGAGTGTACAATCAACCAAGTGCTGCTAGACTAGGAGTTTTAACTCCAGAAATTCATGGTGATCAGATATCGCTCATGTATACTGATATAGCGTTTAGTGAAGATATTCGCGATCTGAAACTCCCAAGTTTACCAGTTTCCTGTGAGCCCTCGACTTCTACTACGGAATGTTTTGTTAAGTCTTCAAACACTATGAAATTGAGTAAAAATTGTCCATCTCAGGAACAGTTGTCAGCTATGGATTCTTTTATTAATTCCATGATGTTAAATTATTCAGATGGAAGCGATGATGATGATGATAATGATAGCGGTGGTGTACTCAACAAGAGAGACGAAAACGACGTGGAAAATCCTTCATCAAGCAGGATCTTAAAAGTTCAACGGATATCAAACCCTTGGATTCAACGTTTCTTTGCCTGTCTTAGAAAACGGGGTCTTGATCCATCAGTACCACTTCCGATTTCAAAGCAATCAGATTCTTGTGATGTTTGGCCGTCACCca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD191253             [                                                                                                                                                                                                                                                                                                                                                                                                                            AAACGACGTGGAAAATCCTTCATCAAGCAGGATCTTAAAAGTTCAACGGATATCAAACCCTTGGATTCAACGTTTCTTTGCCTGTCTTAGAAAACGGGGTCTTGATCCATCAGTACCACTTCCGATTTCAAAGCAATCAGATTCTTCTGATGTTTGGCTGTCACCTGAAATGTTTCCTGGTTTGGAGGAAATCATCACACAAATCAATACAGATTCCGAAACTGCATCTCTAATTGAAT CCCGTAATATTCTTCTTAATTCATTTCCACCTCTTCGTCCTGCTAGTGGTCCAGTAGATTTGACAGAAGAATTTTTGGCGAAAAGACGGCGTTTAACGGATGAAGAATCTTACACTACTTCTTCGTTCACGAAAGAAGTAGACAGTGGATATCCAACCGAACAACTGACCCCAATTTCGGAATTCCCTAGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD078553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGCGAAAAGACGGCGTTTAACGGATGAAGAATCTTACACTACTTCTTCGTTCACGAAAGAAGTAGACAGTGGATATCCAACCGAACAACTGACCCCAATTTCGGAATTAACTAGCACACCGGCGTCAAATTCCATTCAAATAAACTCAGTTCAGGATTTTGAAGACCTAATCTGCCAACAACAAACTGAAGTTGCTTGTAGACTTTTGGAGAAAGAAATAATTCGACTGGTGACCGATCCTTTCACTGCAACTTTATTGCGTCCAAAAGCTATCGCTTACCTGTTCGCTTATCGTAGGCGTTCTCAGCCAAGTAGAGAAATCGTCAATAATAGTAATAAAAACAATCATATTAATGATACTACATGCAACAGCAGCACATGTCATCTTGAAATTGCTCGAGCATATAACTCATTTATTCGTAGTTGGCGCCAGGATCTTATAGATCGTAATCTCCTCGGAAGTAGTGTCTTATCTCAACGTGCTTCTAATGATAGCAAGTTGTCGTTTTGGCTGGAAACAATTACACAAGGTTTCGGTCTTTTGTGCAATGAAGATATCCCAGAAATCGGAGTTAGTCAGTC                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD073020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAGTAATAAAAACAATCATATTAATGATANTACATGCAACAGCAGCACATGTCATCTTGAAATTGCTCGAGCATATAACTCATTTATTCGTAGTTGGCGCCAGGATCTTATAGATCGTAATCTCCTCGGAAGTAGTGTCTTATCTCAACGTGCTTCTAATGATAGCAAGTTGTCGTTTTGGCTGGAAACAATTACACAAGGTTTCGGTCTTTTGTGCAATGAAGATATCCCAGAAATCGGAGTTAGTCAGTCAGAAAATCGTGAGTTTTTGAACTTGGAGGATATTGCAATGTCTCATTTTGCTGAAACAAAAAGTGATCAGCCTGTATCTCCCGACCGTGTTCTCAAAGTTGAGCATTTGATGGATGACACAGATTGAAATTTTCCGTTGTTGTTGTTGTTGTTGTTTTAATCGCTTACAATCACACATATTATGGGTGACCTATTTTCTTGATCATATCAGTCATATTTTGTAATCTATTTTCTTTCCTTCATAAAAGTTTTACGTTATTGATTGTATGTATATAGAGTAATTACACAATTAAATAC]


>consensus_9925#0 TCGTCCATCCTGTCCAACAGCTCTGGCAGCGTTGGCTCAAGCACTTTATGAGGTTAGCGG TGTTGCTCTTGTCCGGAGAGTGTACAATCAACCAAGTGCTGCTAGACTAGGAGTTTTAAC TCCAGAAATTCATGGTGATCAGATATCGCTCATGTATACTGATATAGCGTTTAGTGAAGA TATTCGCGATCTGAAACTCCCAAGTTTACCAGTTTCCTGTGAGCCCTCGACTTCTACTAC GGAATGTTTTGTTAAGTCTTCAAACACTATGAAATTGAGTAAAAATTGTCCATCTCAGGA ACAGTTGTCAGCTATGGATTCTTTTATTAATTCCATGATGTTAAATTATTCAGATGGAAG CGATGATGATGATAATGATAGCGGTGGTGTACTCAACAAGAGAGACGAAAACGACGTGGA AAATCCTTCATCAAGCAGGATCTTAAAAGTTCAACGGATATCAAACCCTTGGATTCAACG TTTCTTTGCCTGTCTTAGAAAACGGGGTCTTGATCCATCAGTACCACTTCCGATTTCAAA GCAATCAGATTCTTCTGATGTTTGGCTGTCACCTGAAATGTTTCCTGGTTTGGAGGAAAT CATCACACANATCAATACAGATTCCGAAACTGCATCTCTAATTGAATCCCCGTATATTCT TCTTATTNCATTTCCACCTCTTCGTCCTGCTAGTGGTCCAGTAGATTTGACAGAAGAATT TTTGGCGAAAAGACGGCGTTTAACGGATGAAGAATCTTACACTACTTCTTCGTTCACGAA AGAAGTAGACAGTGGATATCCAACCGAACAACTGACCCCAATTTCGGAATTCCCTAGTAC ACCGGCGTCAAATTCCATTCAAATAAACTCAGTTCAGGATTTTGAAGACCTAATCTGCCA ACAACAAACTGAAGTTGCTTGTAGACTTTTGGAGAAAGAAATAATTCGACTGGTGACCGA TCCTTTCACTGCAACTTTATTGCGTCCAAAAGCTATCGCTTACCTGTTCGCTTATCGTAG GCGTTCTCAGCCAAGTAGAGAAATCGTCAATAATAGTAATAAAAACAATCATATTAATGA TACTACATGCAACAGCAGCACATGTCATCTTGAAATTGCTCGAGCATATAACTCATTTAT TCGTAGTTGGCGCCAGGATCTTATAGATCGTAATCTCCTCGGAAGTAGTGTCTTATCTCA ACGTGCTTCTAATGATAGCAAGTTGTCGTTTTGGCTGGAAACAATTACACAAGGTTTCGG TCTTTTGTGCAATGAAGATATCCCAGAAATCGGAGTTAGTCAGTCAGAAAATCGTGAGTT TTTGAACTTGGAGGATATTGCAATGTCTCATTTTGCTGAAACAAAAAGTGATCAGCCTGT ATCTCCCGACCGTGTTCTCAAAGTTGAGCATTTGATGGATGACACAGATTGAAATTTTCC GTTGTTGTTGTTGTTGTTGTTTTAATCGCTTACAATCACACATATTATGGGTGACCTATT TTCTTGATCATATCAGTCATATTTTGTAATCTATTTTCTTTCCTTCATAAAAGTTTTACG TTATTGATTGTATGTATATAGAGTAATTACACAATTAAATAC



consensusID : consensus_9925#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 901
fasta sequence
                              [TATCCCTGGGATTTACTGTCGCGAACTCACGCTACAGCTGATTGCTATCAATCACTTTCAGGTAGGACTATACTATACAAACAACCTTGGGAGATTTTAAGGATAACTTCTAGATCAACCAATCAAAATTAGAATAAAAAAAACACAAAAGAAAAGCACTTGCTGCTTGTCAGCAATTTGTATGGTTCGGTTGACGATTCTGATGTCTCCAGGGTGTCTGAAAGCCTCCAATCTTCAGGTATCAAATTCAGCTTGATTGGCTGTGACTTGAAGAAGAGTATTAATGTAACACCTGAAAATCGAGATGAACCTGGACCATCTCATGCCGTTTCTCATCACCTCCATCATTCACCAAAAACTAGACCTTCCATTTC-TTTTTAGCTGAACTCTGGGATCAACTAAATGGAGAATCATATGACTTTAGTGATGCAGTCACTGCATTAAGTATATTCGAAAACCGTAGCGTTTTGCAACGTGGTTGGAATGTAAGTTTGCAAATTGGCGATTCTATCACTATCCCAGTTGTCGGCTATACATATATAAAAGAGGCTCATCCACCAACCATGAGGATAATGTACGCTCCAGATCCCACTCTTCCACTGCGCGCTGTTACAAAATATCGTACACAGGATCCAGATCCTTGCGATTTAAACTCTTCTGAAGTTACTCGAGGTTATCGGTATGGTGGGACTGTAGTCCCCTTTGGTGAAGAAGATATGGCCTCCATAAAACCCCCTTCAGAAAAGTGTTTCAGCGTTATTGGATTTACGAGTGCTGACAATATCCCTCATAACTTTTACACCGGTGAAAGCGTGTTGGTTTTTGTTGCTCAATCAGTCAAACAATCTGAAGACGATGTAACCAATCGTCCATCCTGTCCAACAGCTCTGGCAGCGTTGGC]

[-] EMBL CD180584             [TATCCCTGGGATTTACTGTCGCGAACTCACGCTACAGCTGATTGCTATCAATCACTTTCAGGTAGGACTATACTATACAAACAACCTTGGGAGATTTTAAGGATAACTTCTAGATCAACCAATCAAAATTAGAAT AAAAAAACATAAAAGAAAAGCACTTGCTGCTTGTCAGCAATTTGTATGGTTCGGTTGACGATTCTGATGTCTCCAGGGTGTCTGAAAGCCTCCAATCTTCAGGTATCAAATTCAGCTTGATTGGCTGTGACTTGAAGAAGAGTATTAATGTAACACCTGAAAATCGAGATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD060567             [            TTACTGTCGCGAACTCACGCTAGAGCTGATTGCTATCAATCACTTTCAGGTAGGACTATACTATACAAACAACCTTGGGAGATTTTAAGGATAACTTCTAGATCAACCAATCAAAATTAGAATAAAAAAAACACAAAAGAAAAGCACTTGCTGCTTGTCAGCAATTTGTATGGTTCGGTTGACGATTCTGATGTCTCCAGGGTGTCTGAAAGCCTCCAATCTTCAGGTATCAAATTCAGCTTGATTGGCTGTGACTTGAAGAAGAGTATTAATGTAACACCTGAAAATCGAGATGAACCTGGACCATCTCATGCCGTTTCTCATCACCTCCATCATTCACCAAAAACTAGACCTTCCATTTC TTTTTAGCTGAACTCTGGGATCAACTAAATGGAGAATCATATGACTTTAGTGATGCAGTCACTGCATTAAGTATATTCGAAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD060586             [                                              ATCAATCACTTTCAGGTAGGACTATACTATACAAACAACCTTGGGAGATTTTAAGGATAACTTCTAGATCAACCAATCAAAATTAGAATAAAAAAAACACAAAAGAAAAGCACTTGCTGCTTGTCAGCAATTTGTATGGTTCGGTTGACGATTCTGATGTCTCCAGGGTGTCTGAAAGCCTCCAATCTTCAGGTATCAAATTCAGCTTGATTGGCTGTGACTTGAAGACGAGTATTAATGTAACACCTGAAAATCGAGATGAACCTGGAGCATCTCATGCCGTTTCTCATCACCTCCATCATTCACCAAAAACTAGACCTTCCATTTC TTTTAAGCTGAACTCTGGGATCAACTAAATGGAGAATCATATGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD147698             [                                                                                                                                                                                                                                                                                                                                                                        AGACCTTCCATTTCTTTTTTAGCTGAACTCTGGGATCAACTAAATGGAGAATCATATGACTTTAGTGATGCAGTCACTGCATTGAGTATATTCGAAACCCGTAGCGTTTTGCAACGTGGTTGGAATGTAAGTTTGCAAATTGGCGATTCTATCACTATCCCAGTTGTCGGCTATACATATATAAAAGAGGCTCATCCACCAACCATGAGGATAATGTACGCTCCAGATCCCACTCTTCCACTGCGCGCTGTTACAAAATATCGTACACAGGATCCAGATCCTTGCGATTTAAACTCTTCTGAAGTTACTCGAGGTTATCGGTATGGTGGGACTGTAGTCCCCTTTGGT                                                                                                                                                                                                  ]
[+] EMBL CD158184             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGCTCATCCACCAACCATGAGGATAATGTACGCTCCAGATCCCACTCTTCCACTGCGCGCTGTTACAAAATATCGTACACAGGATCCAGATCCTTGCGATTTAAACTCTTCTGAAGTTACTCGAGGTTATCGGTATGGTGGGACTGTAGTCCCCTTTGGAGAAGAAGATATGGCCTCCATAAAACCCCCTTCAGAAAAGTGTTTCAGCGTTATTGGATTTACGAGTGCTGACAATATCCCTCATAACTTTTACACCGGTGAAAGCGTGTTGGTTTTTGTTGCTCAATCAGTCAAACAATCTGAAGACGATGTAACCAATCGTCCATCCTGTCCAACAGCTCTGGCAGCGTTGGC]


>consensus_9925#1 TATCCCTGGGATTTACTGTCGCGAACTCACGCTACAGCTGATTGCTATCAATCACTTTCA GGTAGGACTATACTATACAAACAACCTTGGGAGATTTTAAGGATAACTTCTAGATCAACC AATCAAAATTAGAATAAAAAAAACACAAAAGAAAAGCACTTGCTGCTTGTCAGCAATTTG TATGGTTCGGTTGACGATTCTGATGTCTCCAGGGTGTCTGAAAGCCTCCAATCTTCAGGT ATCAAATTCAGCTTGATTGGCTGTGACTTGAAGAAGAGTATTAATGTAACACCTGAAAAT CGAGATGAACCTGGACCATCTCATGCCGTTTCTCATCACCTCCATCATTCACCAAAAACT AGACCTTCCATTTCTTTTTAGCTGAACTCTGGGATCAACTAAATGGAGAATCATATGACT TTAGTGATGCAGTCACTGCATTAAGTATATTCGAAAACCGTAGCGTTTTGCAACGTGGTT GGAATGTAAGTTTGCAAATTGGCGATTCTATCACTATCCCAGTTGTCGGCTATACATATA TAAAAGAGGCTCATCCACCAACCATGAGGATAATGTACGCTCCAGATCCCACTCTTCCAC TGCGCGCTGTTACAAAATATCGTACACAGGATCCAGATCCTTGCGATTTAAACTCTTCTG AAGTTACTCGAGGTTATCGGTATGGTGGGACTGTAGTCCCCTTTGGTGAAGAAGATATGG CCTCCATAAAACCCCCTTCAGAAAAGTGTTTCAGCGTTATTGGATTTACGAGTGCTGACA ATATCCCTCATAACTTTTACACCGGTGAAAGCGTGTTGGTTTTTGTTGCTCAATCAGTCA AACAATCTGAAGACGATGTAACCAATCGTCCATCCTGTCCAACAGCTCTGGCAGCGTTGG C



consensusID : consensus_9925#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence
                              [AAACTAGACCTTCCATTTCTTTTTTAGCTGAACTCTGGGATCAACTAAATGGAGAATCATATGACTTTAGGTAGGTTAGTAGCGCCATTTATCTGATTTAAAGCTAATAATTGTTTAGGCCTAGATATTTACATACTACCCTTTGTGTTCAGCCGAGCCATTCAGTCGTAAGCAATGAGGTTAGGTACATAATTTTAGAGGGGTTTAATTAAACAATCAGATTATGAACTTGTAGCTGCTCTGATGGTTTGGTCATGAAAAATGTGTAGAAAGTCACCGTCTATTTCGACATAGGATGTAGGTCGAAGCAAGATTATGTTGGACAGTAGCATAAAAAGCAGATCTAGACACCATACCAGTCTATAAGTCTGTTGGTTGTTCTTTCGAGTCACCCATTTTGTAGATCTTTTAGATAGCGCCTTCGGAGTAGCAAAA]

[+] EMBL CD118325             [AAACTAGACCTTCCATTTCTTTTTTAGCTGAACTCTGGGATCAACTAAATGGAGAATCATATGACTTTAGGTAGGTTAGTAGCGCCATTTATCTGATTTAAAGCTAATAATTGTTTAGGCCTAGATATTTACATACTACCCTTTGTGTTCAGCCGAGCCATTCAGTCGTAAGCAATGAGGTTAGGTACATAATTTTAGAGGGGTTTAATTAAACAATCAGATTATGAACTTGTAGCTGCTCTGATGGTTTGGTCATGAAAAATGTGTAGAAAGTCACCGTCTATTTCGACATAGGATGTAGGTCGAAGCAAGATTATGTTGGACAGTAGCATAAAAAGCAGATCTAGACACCATACCAGTCTATAAGTCTGTTGGTTGTTCTTTCGAGTCACCCATTTTGTAGATCTTTTAGATAGCGCCTTCGGAGTAGCAAAA]


>consensus_9925#2 AAACTAGACCTTCCATTTCTTTTTTAGCTGAACTCTGGGATCAACTAAATGGAGAATCAT ATGACTTTAGGTAGGTTAGTAGCGCCATTTATCTGATTTAAAGCTAATAATTGTTTAGGC CTAGATATTTACATACTACCCTTTGTGTTCAGCCGAGCCATTCAGTCGTAAGCAATGAGG TTAGGTACATAATTTTAGAGGGGTTTAATTAAACAATCAGATTATGAACTTGTAGCTGCT CTGATGGTTTGGTCATGAAAAATGTGTAGAAAGTCACCGTCTATTTCGACATAGGATGTA GGTCGAAGCAAGATTATGTTGGACAGTAGCATAAAAAGCAGATCTAGACACCATACCAGT CTATAAGTCTGTTGGTTGTTCTTTCGAGTCACCCATTTTGTAGATCTTTTAGATAGCGCC TTCGGAGTAGCAAAA



consensusID : consensus_9925#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence
                              [TAATTGGACTGGCGACCGATCCTCTGACTGCAACTTTATTGCGTCCAAAAGCTATCGCTTACCTGTTCGCTTATTGTAAGCGTGCTCAGACAAACAGAGAAATCGACAATAATAGTAATAAATACAATCATATTAATGATACTACATGCAACACCAGCACATGTCATGTTGAAATTGCTCAAGCATATAACTCATTTATTCGTACATGGCGCCAGGATCTTATACATCGGAATCTCCTCGGAAGTAGTGTCTTATCTCAACGTGCTTCTAATGATAGCAAGTTGCCGTTTTGGCTGGAAACAATCACACATGGTGATGG]

[+] EMBL BF937026             [TAATTGGACTGGCGACCGATCCTCTGACTGCAACTTTATTGCGTCCAAAAGCTATCGCTTACCTGTTCGCTTATTGTAAGCGTGCTCAGACAAACAGAGAAATCGACAATAATAGTAATAAATACAATCATATTAATGATACTACATGCAACACCAGCACATGTCATGTTGAAATTGCTCAAGCATATAACTCATTTATTCGTACATGGCGCCAGGATCTTATACATCGGAATCTCCTCGGAAGTAGTGTCTTATCTCAACGTGCTTCTAATGATAGCAAGTTGCCGTTTTGGCTGGAAACAATCACACATGGTGATGG]


>consensus_9925#3 TAATTGGACTGGCGACCGATCCTCTGACTGCAACTTTATTGCGTCCAAAAGCTATCGCTT ACCTGTTCGCTTATTGTAAGCGTGCTCAGACAAACAGAGAAATCGACAATAATAGTAATA AATACAATCATATTAATGATACTACATGCAACACCAGCACATGTCATGTTGAAATTGCTC AAGCATATAACTCATTTATTCGTACATGGCGCCAGGATCTTATACATCGGAATCTCCTCG GAAGTAGTGTCTTATCTCAACGTGCTTCTAATGATAGCAAGTTGCCGTTTTGGCTGGAAA CAATCACACATGGTGATGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9925#0      TCGTCCATCCTGTCCAACAGCTCTGGCAGCGTTGGCTCAAGCACTTTATGAGGTTAGCGG 60
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      TGTTGCTCTTGTCCGGAGAGTGTACAATCAACCAAGTGCTGCTAGACTAGGAGTTTTAAC 120
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      TCCAGAAATTCATGGTGATCAGATATCGCTCATGTATACTGATATAGCGTTTAGTGAAGA 180
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      TATTCGCGATCTGAAACTCCCAAGTTTACCAGTTTCCTGTGAGCCCTCGACTTCTACTAC 240
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      GGAATGTTTTGTTAAGTCTTCAAACACTATGAAATTGAGTAAAAATTGTCCATCTCAGGA 300
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      ACAGTTGTCAGCTATGGATTCTTTTATTAATTCCATGATGTTAAATTATTCAGATGGAAG 360
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      CGATGATGATGATAATGATAGCGGTGGTGTACTCAACAAGAGAGACGAAAACGACGTGGA 420
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      AAATCCTTCATCAAGCAGGATCTTAAAAGTTCAACGGATATCAAACCCTTGGATTCAACG 480
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      TTTCTTTGCCTGTCTTAGAAAACGGGGTCTTGATCCATCAGTACCACTTCCGATTTCAAA 540
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      GCAATCAGATTCTTCTGATGTTTGGCTGTCACCTGAAATGTTTCCTGGTTTGGAGGAAAT 600
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      CATCACACANATCAATACAGATTCCGAAACTGCATCTCTAATTGAATCCCCGTATATTCT 660
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      -------------------------TATCCCTGGGATTTACTGTCGCGAACTCACGCTAC 35
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      TCTTATTNCATTTCCACCTCTTCGTCCTGCTAGTGGTCCAGTAGATTTGACAGAAGAATT 720
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      AGCTGATTGCTATCAATCACTTTCAGGTAGGACTATACTATACAAACAACCTTGGGAGAT 95
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      TTTGGCGAAAAGACGGCGTTTAACGGATGAAGAATCTTACACTACTTCTTCGTTCACGAA 780
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      TTTAAGGATAACTTCTAGATCAACCAATCAAAATTAGAATAAAAA------AAACACAAA 149
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      AGAAGTAGACAGTGGATATCCAACCGAACAACTGACCCCAATTTCGGAATTCCCTAGTAC 840
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      AGAAAAGCACTTGCTGCTTGTCAGCAATTTGTATGGTTCGGTTGACGATTCTGATGTCTC 209
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      ACCGGCGTCAAATTCCATTCAAATAAACTCAGTTCAGGATTTTGAAGACCTAATCTGCCA 900
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      CAGGGTGTCTGAAAGCCTCCAATC---TTCAGGTATCAAATTCAGCTTGATTGGCTGTGA 266
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      ACAACAAACTGAAGTTGCTTGTAGACTTTTGGAGAAAGAAATAATTCGACTGGTGACCGA 960
consensus_9925#3      -----------------------------------------TAATTGGACTGGCGACCGA 19
consensus_9925#1      CTTGAAGAAGAGTATTAATGTAACACCTGAAAATCGAGATGAACCTGGACCATCT-CATG 325
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      TCCTTTCACTGCAACTTTATTGCGT-CCAAAAGCTATCGCTTACCTGTTCGCTT-ATCGT 1018
consensus_9925#3      TCCTCTGACTGCAACTTTATTGCGT-CCAAAAGCTATCGCTTACCTGTTCGCTT-ATTGT 77
consensus_9925#1      CCGTTTCTCATCACCTCCATCATTCACCAAAAACTAGACCTTCCATTTCTTTTT-AGCTG 384
consensus_9925#2      ------------------------------AAACTAGACCTTCCATTTCTTTTTTAGCTG 30
                                                    ** ***   *** * * *    ** *    

consensus_9925#0      AGGCGTTC--TCAGCCAAGTAGAGAAATCGTCAATAATAGTAATAAAAACAATCATATTA 1076
consensus_9925#3      AAGCGTGC--TCAGACAAACAGAGAAATCGACAATAATAGTAATAAATACAATCATATTA 135
consensus_9925#1      AACTCTGGGATCAACTAAATGGAGAATCATATGACTTTAGTGATGCAGTCACT-GCATTA 443
consensus_9925#2      AACTCTGGGATCAACTAAATGGAGAATCATATGACTTTAGGTAGGTTAGTAGCGCCATTT 90
                      *    *    ***   **   *****       *   ***  *       *     *** 

consensus_9925#0      ATGATACT-ACATGCAACAGCAGCACATGTCATCTTGAAATTGCTCGA------GCATAT 1129
consensus_9925#3      ATGATACT-ACATGCAACACCAGCACATGTCATGTTGAAATTGCTCAA------GCATAT 188
consensus_9925#1      AGTATATTCGAAAACCGTAGCGTTTTGCAACGTGGTTGGAATGT--AA------GTTTGC 495
consensus_9925#2      ATCTGATTTAAAGCTAATAATTGTTTAGGCCTAGATATTTACATACTACCCTTTGTGTTC 150
                      *    * *   *      *           *    *           *      *  *  

consensus_9925#0      AACTCATTTATTCGTAGTTGGCGCCAG-----GATCTTATAGAT-CGTAATCTCCTCGGA 1183
consensus_9925#3      AACTCATTTATTCGTACATGGCGCCAG-----GATCTTATACAT-CGGAATCTCCTCGGA 242
consensus_9925#1      AAATTGGCGATTCTATCACTATCCCAGTTGTCGGCTATACATATATAAAAGAGGCTCATC 555
consensus_9925#2      AGCCGAGCCATTCAGTCGTAAGCAATGAGGTTAGGTACATAATTTTAGAGGGGTTTAATT 210
                      *        ****             *           * *  *    *      *    

consensus_9925#0      AGTAGTGTCTTATCTCAACGTGCTTCTAATGATAGCAAGTTGTCGTTTTG----GCTGGA 1239
consensus_9925#3      AGTAGTGTCTTATCTCAACGTGCTTCTAATGATAGCAAGTTGCCGTTTTG----GCTGGA 298
consensus_9925#1      CACCAACCATGAGGATAATGTACGCTCCA-GATCCCACTCTTCCACTGCGCGCTGTTACA 614
consensus_9925#2      AAACAATCA----GATTATGAACTTGTAG-----CTGCTCTGATGGTTTG----GTCATG 257
                                       * *  *                 *     *  *    *     

consensus_9925#0      AACAAT-TACACA-AGGTTTCGGTCTTTTGTGCAATGAAGATATCCCAGA--AATCGGAG 1295
consensus_9925#3      AACAAT-CACACA-TGGTGATGG------------------------------------- 319
consensus_9925#1      AAATAT-CGTACACAGGATCCAGATCCTTGCGATTTAAACTCTTCTGAAGTTACTCGAGG 673
consensus_9925#2      AAAAATGTGTAGA-AAGTCACCGTCTATTTCGACATAG--------GATGTAGGTCGAAG 308
                      **  **    * *   *     *                                     

consensus_9925#0      TTAGTCAGTCAGAAAATCGTGAGTTTTTGAACTTGGAGGATATTGCAATGTCTCATTTTG 1355
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      TTATCGGTATGGTGGGACTGTAGTCCCCTTTGGTGAAGAAGATATGGCCTCCATAAAACC 733
consensus_9925#2      CAA--GATTATGTTGGACAGTAGCAT------AAAAAGCAGATCTAGACACCATA----C 356
                                                                                  

consensus_9925#0      CTGAAACAAAAAGTGATCAGCCTGTATCTCCCGACCGTGTTCTCAAAGTTGAGCATTTGA 1415
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      CCCTTCAGAAAAGTGTTTCAGCGTTATTGGATTTACGAGTGCTGACAATATCCCTCATAA 793
consensus_9925#2      CAGTCTATAAGTCTGTTGGTTGTTCTTTCGAGTCACCCATTTTGTAGATCTTTTAGATAG 416
                                                                                  

consensus_9925#0      TGGATGACACAGATTGAAATTTTCCGTTGTTGTTGTTGTTGTTGTTTTAATCGCTTACAA 1475
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      CTTTTACACCGGTGAAAGCGTGTTGGTTTTTGTTGCTCAATCAGTCAAACAATCTGAAGA 853
consensus_9925#2      CGCCTTCGGAGTAGCAAAA----------------------------------------- 435
                                                                                  

consensus_9925#0      TCACACATATTATGGGTGACCTATTTTCTTGATCATATCAGTCATATTTTGTAATCTATT 1535
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      CGATGTAACCAATCGTCCATCCTGTCCAACAGCTCTGGCAGCGTTGGC------------ 901
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      TTCTTTCCTTCATAAAAGTTTTACGTTATTGATTGTATGTATATAGAGTAATTACACAAT 1595
consensus_9925#3      ------------------------------------------------------------
consensus_9925#1      ------------------------------------------------------------
consensus_9925#2      ------------------------------------------------------------
                                                                                  

consensus_9925#0      TAAATAC 1602
consensus_9925#3      -------
consensus_9925#1      -------
consensus_9925#2      -------
                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)