These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 904 fasta sequence [ACAAGGTAGGTTTTCAGAAC-ATTCA-CTTGTCGTTAATAGATATCGCTTTCGATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC-ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC-ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAG-GCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGTTTGGATCA] [+] EMBL CD127928 [ACAAGGTAGGTTTTCAGAAC ATTCA CTTGTCGTTAATAGATATCGCTTTCCATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCCATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTG ] [+] EMBL CD127678 [ GGTTTACAGAACAATTTATCTTGTCATTAATAGATATCGCTTTCGATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCTTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTC ] [-] EMBL CD196111 [ TCGCTTTCGATATACTTAATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGC ] [+] EMBL CD094418 [ ATTGAAATTTACTTGTCCTTGAATAGTTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCA ] [+] EMBL CD196152 [ GCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATC ] [-] EMBL CD116358 [ AACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGT ] [-] EMBL CD116338 [ AACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTGCATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGT ] [-] EMBL CD087969 [ ACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGC ATTACCTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGT ] [-] EMBL CD162327 [ ATTCATTCGCACCCATCCGATAACCTCATCTGCAATTACNTACATCACCGTCCGTAAGAAATATGA TTGTTTGAACCAACCTTCACCACTCGGTGTTGAATGTAGAGCTGCCTTTAGAGCATTGTAAGCTTCTGTACCGCCC ATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGA ] [+] EMBL CD112717 [ CTTTAGAGCATTGTAAGCTTCTGTACCGCCCGATATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGCGCAAA ] [-] EMBL CD132102 [ ATCAGCATTCAGGTCTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCTGGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGTAAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAG GCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGTTTGGATCA] consensusID : consensus_9930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [GAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACCTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTACCTACATCACCGTCCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAATATAGACGACTGGTTTGGATCACCATATTCCAGAGATGATAGAGATGTAAGTGG] [-] EMBL CD189756 [GAAATATGTCGAGAACCGATCAGGGAATACTGGAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATTTCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAAGAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCATTGCCAGCTCGAGCAACACCACCAATTAATGCAGTACCTACTCCCTGTCCAAGTCCTATAGTAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTACCTACATCACCGTCCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAATATAGACGACTGGTTTGGATCACCATATTCCAGAGATGATAGAGATGTAAGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9930#0 ACAAGGTAGGTTTTCAGAACATTCACTTGTCGTTAATAGATATCGCTTTCGATATACTTA 60 consensus_9930#1 ------------------------------------------------------------ consensus_9930#0 ATATGAATGATTTCTTTTCACCTAGTACACTACAATTGAAATTTACTTGTCCTTGAATAG 120 consensus_9930#1 ------------------------------------------------------------ consensus_9930#0 TTGATGATTTATCAGATTTGAAAAAACCGAAATATGTCGAGAACCGATCAGGGAATACTG 180 consensus_9930#1 ----------------------------GAAATATGTCGAGAACCGATCAGGGAATACTG 32 ******************************** consensus_9930#0 GAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATT 240 consensus_9930#1 GAGCTATTCGCTTGGGAACAACTATCACTTCTATTGGTTTCTCCTTGTCATCATGAAATT 92 ************************************************************ consensus_9930#0 TCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAA 300 consensus_9930#1 TCTCGACTAACTTCCAATCCATTTCAATATTATCAGCTCTTGGCTGTAATGCAGCTGAAA 152 ************************************************************ consensus_9930#0 GAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCAT 360 consensus_9930#1 GAGTCCTCATCACAGCTGACTGCAGCTGAGAGGGATCACGAACAAATTCTGCCGTACCAT 212 ************************************************************ consensus_9930#0 TGCCAGCTCGAGCAACACCACCAATTAATGCAGTACTTACTCCCTGTCCAAGTCCTATAG 420 consensus_9930#1 TGCCAGCTCGAGCAACACCACCAATTAATGCAGTACCTACTCCCTGTCCAAGTCCTATAG 272 ************************************ *********************** consensus_9930#0 TAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTAC 480 consensus_9930#1 TAAATACTCTTGCCTTGTCAACATTCATTCGCACCAATCCGATAACCTCATCTGCATTAC 332 ************************************************************ consensus_9930#0 CTACATCACCGTCCGTAAGAAATATGATTTGTTTGAACCAACCTTCACCACTCGGTGTTG 540 consensus_9930#1 CTACATCACCGTCCGTAAGAAATATTATCACCTTCCATACTACCTGAACGATCGATTAAA 392 ************************* ** ** * * * * * *** * consensus_9930#0 AATGTAGAGCTGCCTTTAGAGCATTGTAAGCTT-CTGTACCGCCCATATCAGCATTCAGG 599 consensus_9930#1 AACACGAACTCATATCGCATGTCTTTAGAACTAACAACATTAGGAATATCAGGCAAAAGC 452 ** * * * ** * ** * * ******* ** consensus_9930#0 T---CTTTTTGGTAGTTCATTGCTGTATTTAACGATCCTTCAGAATAGTCTGTAGGTTCT 656 consensus_9930#1 TGTACCATCAAACAGTTCATAGCTAATATAGACGACTGGTTTGGATCACC---ATATTCC 509 * * * ******* *** * **** * * ** * * *** consensus_9930#0 GGAAATAAAGCAGCAAAATCACTCCCGAAGCCAATAATTTGAAAACGACAACTCATAGGT 716 consensus_9930#1 AGAGATGA--TAGAGATGTAAGTGG----------------------------------- 532 ** ** * ** * * * * consensus_9930#0 AAGCTCTTTAGGAAGAGAAGAAGGGAGGTCTTAGCGTAAGAAATATTATCACCTTCCATA 776 consensus_9930#1 ------------------------------------------------------------ consensus_9930#0 CTACCTGAACGATCGATTAAAAACACGAACTCATATCGCATGTCTTTAGAACTAACAACA 836 consensus_9930#1 ------------------------------------------------------------ consensus_9930#0 TTAGGAATATCAGGCAAAAGCTGTACCATCAAACAGTTCATAGCTAAATAGACGACTGGT 896 consensus_9930#1 ------------------------------------------------------------ consensus_9930#0 TTGGATCA 904 consensus_9930#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||