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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1157 fasta sequence
[CAATACGTGATGAGAACCGGTAAGATTATTTTCCAA-AACAAACTTTGAATATACAATGAACAATTGCATGAAATTAATCACGCTCAACAATTAGAACAATGAAAAATAATGAAAGGCCATCTCATATAACGAATATATGACAGGATCGGCAAAGAGATATAAAGCTACTTATAGAATATAGGTGAATAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGATATCTTTAACATGGATAAATAAGGGAACTGGGGAAATGAAAAGAACATAAATACATATAGAGTATATATATAAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTC-AAAAAAAGAAAACTTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAACTTCAATTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCCAGAAACCATCCAAATCACTAACTAAAGTGACTAATGTATTAGGTTCATTTACAAAATTGTTGTCAACCCCAACTGTTTTTGAATTCTCCCAGGCAAGGTTTCGATGGCATAAGGCACGAAATTGACAAAACTTTTCAGAAATCAGTAGTCTCGCTTTGCCAGAAGCAGTTCGTAAAAGACCAGAAACTTCATCATTCAAATCAACTTCATTATTAAGATCAGTTTCAATTTCACAAACTTTATTCAATAATTCTTTCTCTGTTTGATCTACTTGTTGAAGATAAAAATTTCCATCCACTTTAATTTCTGATTCATTTGACA]
[+] EMBL CD159724 [CAATACGTGATGAGAACCGGTAAGATTATTTTCCAA AACAAACTTTGAATATACAATGAACAATTGCATGAAATTAATCACGCTCAACAATTAGAACAATGAAAAATAATGAAAGGCCATCTCATATAACGAATATATGACAGGATCGGCAAAGAGATATGAAGCTACTTATAGAATATAGGTGAGTAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGATATCTTTAACATGGATCAATAAGGGAACTCGGGAAATGAAAAGAACATAAATACATATAGAGTATATATATCAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTC AAAAAAAGAAAACTTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAAC ]
[+] EMBL CD159735 [ AATAAGTGATGAAAACTGGTAAGATTATTTTCCAAGAACAAACTTTGAATATACAATGAACAATTGCATGAAATTAATCACGCTCAACAATTAGAACAATGAAAAATAATGAAAGGCCATCTCATATAACGAATATATGACAGGATCGGCAAAGAGATATAAAGCTACTTATAGAATATAGGTGAATAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGATATCTTTAACATGGATAAATAAGGGAACTGGGGGAATGAAAAGAACATAAATACATATAGAGTATATATATAAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTC AAAAAAAGAAAACTTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAACTTCAATTTTATTTTGATTGTGGACTTA ]
[-] EMBL CD147650 [ CGAATATATGACAGGATCGGCAAAGAGATATAAAGCTACTTATAGAATATAGGTGAATAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGATATCTTTAACATGGATAAATAAGGGAACTGGGGAAATGAAAAGAACATAAATACATATAGAGTATATATATAAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTCAAAAAAAAGAAAACTTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAAT ]
[-] EMBL CD159749 [ TAATACTTTACACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAACTTCAATTTTATTTTTATTGTGGCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTCTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ]
[-] EMBL CD159740 [ GAAATTCATAACTTTTATCGCAGTAAAATAACTTCAATTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTACCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ]
[-] EMBL CD159784 [ AATTCATAACTTTTATCGCAGTAAAATAACTTCAATTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTCTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ]
[-] EMBL CD159766 [ TCATAACTTTTATTGCAGTAAAATAATTTCAATTGTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCGTGTAAAAATTCTATACCAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTAAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAGCCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ]
[-] EMBL CD159738 [ AGTACAATAACTTCAATTTTATTTTTATTGTGCCCTTATTTATGTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTCTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTACCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ]
[-] EMBL CD159746 [ AATAACTTCAATTTTATTTTTATTGTGGCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ]
[-] EMBL CD159783 [ AACTTCAATTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAAATATTGAAATGAAAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAGATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATC ]
[+] EMBL CD154155 [ GTTGTCGAGCAATTGTATTGTTTTGTTTAGATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCCAGAAACCATCCAAATCACTAACTAAAGTGACTAATGTATTAGGTTCATTTACAAAATTGTTGTCAACCCCAACTGTTTTTGAATTCTCCCAGGCAAGGTTTCGATGGCATAAGGCACGAAATTGACAAAACTTTTCAGAAATCAGTAGTCTCGCTTTGCCAGAAGCAGTTCGTAAAAGACCAGAAACTTCATCATTCAAATCAACTTCATTATTAAGATCAGTTTCAATTTCACAAACTTTATTCAATAATTCTTTCTCTGTTTGATCTACTTGTTGAAGATAAAAATTTCCATCCACTTTAATTTCTGATTCATTTGACA]
consensusID : consensus_9932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence
[AGCTGGGTTTATACCGTCGTGAGACAGGTTAGTATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAAATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCCAGAAACCATCCAAATCACTAACTAAAGTGA]
[+] EMBL CD062085 [AGCTGGGTTTATACCGTCGTGAGACAGGTTAGTATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGATATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTTTAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAAATAAAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTACTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTAAAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCCAGAAACCATCCAAATCACTAACTAAAGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9932#0 CAATACGTGATGAGAACCGGTAAGATTATTTTCCAAAACAAACTTTGAATATACAATGAA 60
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 CAATTGCATGAAATTAATCACGCTCAACAATTAGAACAATGAAAAATAATGAAAGGCCAT 120
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 CTCATATAACGAATATATGACAGGATCGGCAAAGAGATATAAAGCTACTTATAGAATATA 180
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 GGTGAATAGTAAATGAATTTGTCTAATTAAAAAGTCTAAGACTGTTTGTTTATCTCTGAT 240
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 ATCTTTAACATGGATAAATAAGGGAACTGGGGAAATGAAAAGAACATAAATACATATAGA 300
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 GTATATATATAAAGGGATTCGTTGAGAAAAAGCGGGAGATAATGCTCAAAAAAAGAAAAC 360
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 TTTAATACTTTAAACAATACAACGAAATTCATAACTTTTATTGCAGTAAAATAACTTCAA 420
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 TTTTATTTTTATTGTGCCCTTATTTATTTAGAAAAAGAAGATTAGTTTACAA-ATATTGA 479
consensus_9932#1 --------------------------------------AGCTGGGTTTATACCGTCGTGA 22
** * ***** * * ***
consensus_9932#0 AATGA---AAGATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGA 536
consensus_9932#1 GACAGGTTAGTATATACTTCTTGTAAAAATTCTATACAAATATAAGCTTATTTTCAGTGA 82
* * *************************************************
consensus_9932#0 TATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTT 596
consensus_9932#1 TATTTAATGTTGACTTATCATCATGTGAACTATTCAAATTCTTTAACTGCATATTACGTT 142
************************************************************
consensus_9932#0 TAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAGATA 656
consensus_9932#1 TAGCATGTTCAAGACGTTCACGGGCCTGTTGTCGAGCAATTGTATTGTTTTGTTTAAATA 202
******************************************************** ***
consensus_9932#0 AAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTA 716
consensus_9932#1 AAGTGGATTTAGTAACTTTACGATTTAACTTTCGTTTCTCTGACGAAATGGAGTCACCTA 262
************************************************************
consensus_9932#0 CTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTA 776
consensus_9932#1 CTGAGATATTTTGCGTAGCAGATAGTGAGTTATCAACCGGTTGCCAATTGTTAGCCCGTA 322
************************************************************
consensus_9932#0 AAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCC 836
consensus_9932#1 AAGAATCCACTTGTTTGAATAAACCACGAATGTCATCTACTTGAAGTGATACCATTGCCC 382
************************************************************
consensus_9932#0 AGAAACCATCCAAATCACTAACTAAAGTGACTAATGTATTAGGTTCATTTACAAAATTGT 896
consensus_9932#1 AGAAACCATCCAAATCACTAACTAAAGTGA------------------------------ 412
******************************
consensus_9932#0 TGTCAACCCCAACTGTTTTTGAATTCTCCCAGGCAAGGTTTCGATGGCATAAGGCACGAA 956
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 ATTGACAAAACTTTTCAGAAATCAGTAGTCTCGCTTTGCCAGAAGCAGTTCGTAAAAGAC 1016
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 CAGAAACTTCATCATTCAAATCAACTTCATTATTAAGATCAGTTTCAATTTCACAAACTT 1076
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 TATTCAATAATTCTTTCTCTGTTTGATCTACTTGTTGAAGATAAAAATTTCCATCCACTT 1136
consensus_9932#1 ------------------------------------------------------------
consensus_9932#0 TAATTTCTGATTCATTTGACA 1157
consensus_9932#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||