These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1021 fasta sequence [CTATGGACAGTTACTCATTTGTCCGACCTGGAAAGTTAAAATTAAAAGGTGAGAAGAAAAAAAAGCACCACAAAAGACGTCAAGAATCAAAACCAAAGGTTGAGAAA-ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAACAAGCTAAAACCAATGAAATGGTTATCTTTCGTTCTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAGCAAAGAAGATTTCAGTGATGTAAAACGCGCTTGTCATTCTGGCAATCTGTATGAATGTGTACTAGATCGACGTGAAAAAATGAAATCAGATCGATACTGTAAATAGTGATAATTCATCGTGTAATTTTTTTTATCGTCTTTTTACGAAACATGTATTATTTGTTCACTGAAGTGTTGTCGAAATCGTCGAGACAGTTTTCTTGACTACCGGAAGATAATTTATTTTAATGTTTCCTTTCTTTGTTAATAAATTTGTCA] [+] EMBL CD078748 [CTATGGACAGTTACTCATTTGTCCGACCTGGAAAGTTAAAATTAAAAGGTGAGAAGAAAAAAAAGCACCACAAAAGACGTCAAGAATCAAAACCAAAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCANACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAA ] [+] EMBL CD079453 [ AGAATCAAAACC AAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGGTGCATTTAAATCTGGGTATGGTAGATATCTTGGGGTTTGCACCAAATCCGACGCTATTTTGAGAGCCACAGCATAT ] [+] EMBL CD153520 [ CAAAGGTTGAGAAATACAGAGCTTATTTTGTAAGTGGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAGTAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACGCGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAAGCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGaa ] [+] EMBL CD153529 [ CAAAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGAT CCATTACGGATG ] [+] EMBL CD153548 [ CAAAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTA ] [+] EMBL CD153564 [ CAAAGGTTGAGAAA ACAGAACGTATTTTGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATTCAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCT ] [+] EMBL CD079104 [ CGACAACTGATGAGCTTGAAGCAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAGCTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCCCATAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTTATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAACAAGCTAAAACCAATGAAATGGTTATCTTTCGTTCTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTA ] [-] EMBL CD132293 [ TAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATGCTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAACAAGCTAAAACCAATGAAATGGTTATCTTTCGTTCTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAGCAA ] [-] EMBL CD073558 [ GAG TTTTGAACAATTCGAACCAA TTTTCAAGATGGTCGTAGTGCTTTGTTAGGAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTCAACAAGGTAAAACCAATGAAATGGTTATCTTTCGTTTTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAGCAAAGAAGATTTCAGTGATGTAAAACGCGCTTGTCATTCTGGCAATCTGTATGAATGTTTACTAGATCGACGTGAAAAAATGAAATCAGATCGATACTGTAAATAGTGATAATTCATCGTGTAATTTTTTTTATCGTCTTTTTACGAAACATGTATTATTTGTTCACTGAAGTGTTGTCGAAATCGTCGAGACAGTTTTCTTGACTACCGGAAGATAATTTATTTTAATGTTTCCTTTCTTTGTTAATAAATTTGTCA] [-] EMBL CD073724 [ AATCAAATGGTTATCTTTCGTTTTAATAAACCTCTTATCCATGATCCTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATGTACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAACAAAGAAGATTTCAGTGATGTAAAACGCGCTCGTCATTCTGGCAATGTGTATGAATGTGTATTAGATCGCCGTGAAAAAATGAAATCAGATCGATACTGTAAATAGTGATAATTCATCGTGTAATTTTTTTTATCGTCTTTTTACGCAACATGGATTATTTGTTCCCTGAAGTGTTGTCGAAATCGTCCAGACAGTTTTTTTGACTACCGGAAGATAATTTATTGTAATGTTTCCTTTCTTTATTAATAAATTTGTC ] [+] EMBL AA791373 [ TCTGGCAATCTGTATGAATGTCTACTAGATCGACGTGAAAAAATGAAATCAGATCGATACTGT ATAGTGATAATTCATCGTGTAATTTTTTTTATCGTCTTTTTACGAAACATGTATTATTTGTTCACTGAAGTGTTGTCGAAATCGTCGAGACAGTTCTCTTGACTACCGGAAGATAATTTATTTTAATGTTTCCTTc ] consensusID : consensus_9934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [AAGGGTTAAAAAAAGGTGAAGTTAATTATGGACGTAAATTTCAAAGTTGGCAAGATCAAAAGGTACGTTTAAGCAAAGAAGATTTCAGTGATGTAAAACGGGGTTGTCATTTTGGCAATTTGTATGAAAGTTTAGTAGATCGACGTGAAAAAATGAAATCAGATCGAAACTGGAAAAAGGGAAAATTCATCGGGGAAATTTTTTTATTGTCTTTTTACGAAACATGGATTATTTGTTCCCTGAAGGGTTGTTGAAATTGTCGAGACAGTTTTTTTGACTACCGGAAGAAAATTTATTTTAAAGGTTCCCTTTTTTGGTAAAAAATTTGTC] [-] EMBL CD073208 [AAGGGTTAAAAAAAGGTGAAGTTAATTATGGACGTAAATTTCAAAGTTGGCAAGATCAAAAGGTACGTTTAAGCAAAGAAGATTTCAGTGATGTAAAACGGGGTTGTCATTTTGGCAATTTGTATGAAAGTTTAGTAGATCGACGTGAAAAAATGAAATCAGATCGAAACTGGAAAAAGGGAAAATTCATCGGGGAAATTTTTTTATTGTCTTTTTACGAAACATGGATTATTTGTTCCCTGAAGGGTTGTTGAAATTGTCGAGACAGTTTTTTTGACTACCGGAAGAAAATTTATTTTAAAGGTTCCCTTTTTTGGTAAAAAATTTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9934#0 CTATGGACAGTTACTCATTTGTCCGACCTGGAAAGTTAAAATTAAAAGGTGAGAAGAAAA 60 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 AAAAGCACCACAAAAGACGTCAAGAATCAAAACCAAAGGTTGAGAAAACAGAACGTATTT 120 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 TGGAAGCAGATGCTCATGGTGGCTGGTGGTCTGCGAAAGAATTCGATGAAGTTAAGGATT 180 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 CAATAGCAATACAAGTTTATGTTGCAACTGATAAACCGTCGACAACTGATGAGCTTGAAG 240 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 CAGCTACACGCTCTGGGCAGAATGCTAACAACGAGTTTACAGGTGCTTGTTACTTATCAG 300 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 CTACCGATGAAGGTTTGGTTGTTATCGGACCACCAAGAAAGTACGGTGAACCACCAGCCC 360 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 CAGAGGAGATTTTCACCGCTATGCAAGTTTCGGATACTAAAGTTGCATTTAAATCTGGTT 420 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 ATGGTAGATATCTTGGTGTTTCCACCAAATCCGACGCTATTTTGGGAGCCACAGCAGATG 480 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 CTGTTGGAGTTTTTGAACAATTCGAACCAATTTTTCAAGATGGTCGTAGTGCTTTGTTAG 540 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 GAGCAAACAATTGTTTCCTTTCAGCTGATCCCATTACGGATGATATTGTATTCAAAAGTC 600 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 AACAAGCTAAAACCAATGAAATGGTTATCTTTCGTTCTAATAAACCTCTTATCCATGATC 660 consensus_9934#1 ------------------------------------------------------------ consensus_9934#0 CTTTATTGGATATACCAGAAGAAGAACGGGAAGGCTTAAAAAAAGCTGAAGTTAATTATG 720 consensus_9934#1 ------------------------------AAGGGTTAAAAAAAGGTGAAGTTAATTATG 30 **** ********** ************** consensus_9934#0 TACGTAAATTTCAAAGTTGGCAAGATCAAAAGCTACGTTTAAGCAAAGAAGATTTCAGTG 780 consensus_9934#1 GACGTAAATTTCAAAGTTGGCAAGATCAAAAGGTACGTTTAAGCAAAGAAGATTTCAGTG 90 ******************************* *************************** consensus_9934#0 ATGTAAAACGCGCTTGTCATTCTGGCAATCTGTATGAATGTGTACTAGATCGACGTGAAA 840 consensus_9934#1 ATGTAAAACGGGGTTGTCATTTTGGCAATTTGTATGAAAGTTTAGTAGATCGACGTGAAA 150 ********** * ******** ******* ******** ** ** *************** consensus_9934#0 AAATGAAATCAGATCGATACTGTAAATAGTGATAATTCATCGTGTAATTTTTTTTATCGT 900 consensus_9934#1 AAATGAAATCAGATCGAAACTGGAAAAAGGGAAAATTCATCGGGGAAATTTTTTTATTGT 210 ***************** **** *** ** ** ********* * ** ********* ** consensus_9934#0 CTTTTTACGAAACATGTATTATTTGTTCACTGAAGTGTTGTCGAAATCGTCGAGACAGTT 960 consensus_9934#1 CTTTTTACGAAACATGGATTATTTGTTCCCTGAAGGGTTGTTGAAATTGTCGAGACAGTT 270 **************** *********** ****** ***** ***** ************ consensus_9934#0 TTCTTGACTACCGGAAGATAATTTATTTTAATGTTTCCTTTCTTTGTTAATAAATTTGTC 1020 consensus_9934#1 TTTTTGACTACCGGAAGAAAATTTATTTTAAAGGTTCCCTTTTTTGGTAAAAAATTTGTC 330 ** *************** ************ * **** ** **** *** ********* consensus_9934#0 A 1021 consensus_9934#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||