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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1231 fasta sequence
[ACTGTGGAGTGTTGAAGCTAAAAATCTTTCTTATCTTTCAAAGTATTCATTTGAAAACGTTTTAATGAATATGCTACTCGGTTGTACATGGGTAGGCAATAAAGTTGCTGCCGTATCTTTAGGTGGTTCGATTCATGTATTTGATGTGCCACCTGGATCAAAGTCTCTCTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCATTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATG-ACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGTATATGGCGTGTGTAGAAAAAAGTACAGTCCGTATTCTAGCAGTCTCTTGAAATGGTGTTTCCCAGAATATTTGTTTGCAATTTGATTCATTTACTTGCTTCCCGTTTTCAATACTTATGTAATATAAAGTGTTTTGGGTTTCACTTTTCTTCT]
[+] EMBL CD147834 [ACTGTGGAGTGTTGAAGCTAAAAATCTTTCTTATCTTTCAAAGTATTCATTTGAAAACGTTTTAATGAATATGCTACTCGGTTGTACATGGGTAGGCAATAAAGTTGCTGCCGTATCTTTAGGTGGTTCGATTCATGTATTTGATGTGCCACCTGGATCAAAGTCTCTCTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATG ]
[+] EMBL CD117146 [ TTTAATGAATATGCTACTCGGTTGTACATGGGTAGGCAATAAAGTTGCTGCCGTATCTTTAGGTGGTTCGATTCATGTATTTGATGTGCCACCTGGATCAAAGTCTCTCTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTGGGAATATCTACAATGAGTATTTCANAAAAGTTGTCATTAATTGTTGTTGGATCA ]
[+] EMBL CD159494 [ CTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAACAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAGTATCTACAATGAG ]
[+] EMBL CD159474 [ CTCTCCACCAAAATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTAT ]
[+] EMBL CD117519 [ AATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGG ]
[+] EMBL CD117639 [ AATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAACCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGA ]
[+] EMBL CD113044 [ ATATCAACTGGTCTAGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTTGGGAAAATATGTGATCACTATTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGAACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGAATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGTTCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAAC ]
[+] EMBL CD082966 [ ATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCATTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATG ACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTNTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGT ]
[-] EMBL CD076549 [ TGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCATTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATG ACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGTATATGGCGTGTGTAGAAAAAAGTACAGTCCGTATTCTAGCAGTCTCTTGAAATGGTGTTTCCCAGAATATTTGTTTGCAATTTGATTCATTTACTTGCTTCCCGTTTTCAATACTTATGTAATATAAAGTGTT ]
[-] EMBL CD111033 [ TTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCATTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATG ACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTCGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGAT ]
[+] EMBL AW061408 [ TTATGAAGGAAATCAAAATGTACCTCCCAACTCTTAAATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAGTCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATTAGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGGATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGTATATGGCGTGTGTAG AAAAAGTACAGTCCGTATTCTAGCAGTCTCTTGAAATGGTG TTCCAAGAATATTTGTTTGCAA TTGATTCATTTACTTGC TCCCGTTTACAATACTTATGTAATATAAAGTGTTTTGGGTTTCACTTTTCTTCT]
consensusID : consensus_9936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[CAGCCAGAATTCGTCACGAGGTTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATG]
[+] EMBL CD077713 [CAGCCAGAATTCGTCACGAGGTTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAAAAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAGTATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTTTCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAACCCCAGAAGTGATCGATTTTTCACCTAATGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9936#0 ACTGTGGAGTGTTGAAGCTAAAAATCTTTCTTATCTTTCAAAGTATTCATTTGAAAACGT 60
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 TTTAATGAATATGCTACTCGGTTGTACATGGGTAGGCAATAAAGTTGCTGCCGTATCTTT 120
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 AGGTGGTTCGATTCATGTATTTGATGTGCCACCTGGATCAAAGTCTCTCTCTCCACCAAA 180
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 ATTTTCTATACATGGGCATAAACTCCATATAACCTGCGCAAGGTTTAGCACGCCTAATAA 240
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 CCGTCTGATTACTGCAAGTTCTGACGGGTCAATGGCATCTTGGGATATATCAACTGGTCT 300
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 AGCTGAAATGTTTTCTGGTACAGAAGCTCATACTTCACAAGTACAATCAATATCGCTTTT 360
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 GGGAAAATATGTGATCACTGTTGGTATCGATGATCGATGTGTTGTCAGTTCTATAAGTGA 420
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 ACTAAAACACATGATATCTACAAAGCTTCCATCTCAACCACGTTGTGTACAATCAATGGA 480
consensus_9936#1 ----------------------------------------------------------CA 2
*
consensus_9936#0 ATCGAAATGTGTATTAATCATTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAA 540
consensus_9936#1 GCCAGAATTCGTCACGAG-GTTGTTTCATGTATTGAACATATGGTTTTATTGGAGCTTAA 61
* *** ** * ****************************************
consensus_9936#0 AAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAG 600
consensus_9936#1 AAATAATTCATTAGTATTGTTAGATCAACTAGACGTTCCACTAGGAATATCTACAATGAG 121
************************************************************
consensus_9936#0 TATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTT 660
consensus_9936#1 TATTTCAAAAAAGTTGTCATTAATTGTTGTTGGATCACAGAATCTAGGTAATACATCGTT 181
************************************************************
consensus_9936#0 TCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAAC 720
consensus_9936#1 TCATATATCATCAAACCAAAAGTTAAAACGATTAAGTCTTGTCAATGGGTCCGATGTAAC 241
************************************************************
consensus_9936#0 CCCAGAAGTGATCGATTTTTCACCTAATGATGAAACACTAGCTTGTGCAAACCCAGATCA 780
consensus_9936#1 CCCAGAAGTGATCGATTTTTCACCTAATGATG---------------------------- 273
********************************
consensus_9936#0 TTCAATAAATTTGTTCTCCGTGACTTATGAAGGAAATCAAAATGACCTCCCAACTCTTAA 840
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 ATCTGCTCTTTCTGAATGGTGGCTCAGACACTCAGCTAGAATAACTTGTATCAGTTGGAG 900
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 TCCAAATGGTCGTCGCTTGGCCACTGGAAGTATTGATAGTTCTATTGTTATTTGGTCATT 960
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 AGATGAACCAAGCAAACAGGTGGTTTTGAAAGCGGCTCATCCTATGAGTAATAGCACTGG 1020
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 ATTATGTTGGGTCAGTGACGATCGCTTGTTAAGTTCAGCACACGATGGAAGCATTCGTAT 1080
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 ATGGCGTGTGTAGAAAAAAGTACAGTCCGTATTCTAGCAGTCTCTTGAAATGGTGTTTCC 1140
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 CAGAATATTTGTTTGCAATTTGATTCATTTACTTGCTTCCCGTTTTCAATACTTATGTAA 1200
consensus_9936#1 ------------------------------------------------------------
consensus_9936#0 TATAAAGTGTTTTGGGTTTCACTTTTCTTCT 1231
consensus_9936#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||