These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1148 fasta sequence [NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAAAATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACA-AGAGGTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAATCGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAAGAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCAAGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGTCTAACGCA] [+] EMBL CD127267 [NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTAGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGCTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGA ] [-] EMBL CD127068 [ ATAGGTAGGTCAAGATGATTTCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTATGGCATCTGGCAGCAGAGACCGTTAT ] [+] EMBL CD071569 [ TTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGACGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCANATGGATATAGACATGCTTGGGTTTCGAGATGCNGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAt ] [+] EMBL AI110922 [ ACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAAAAACCGTTATATTCTGTTACGTGATACNCGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTANAAAGTGATTCAAA ] [+] EMBL AI110904 [ ACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCANCAAAAACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCa ] [+] EMBL AI111050 [ ACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAAAAACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTANCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGC ] [-] EMBL CD183896 [ GACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCTAATACTTCTGTACTAACTGCTGAACTTGCTGCTAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGGTCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAAAATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACA AGAGGTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAATCGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACG ] [+] EMBL CD166292 [ TGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAATTCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCTTCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCAGCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCTGCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGAC ] [-] EMBL CD198982 [ ACAGAG GGTATGTGGGTTAAAATGGTCTNCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAATCGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAAGAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCAAGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGTCTAACGCA] [-] EMBL CD199046 [ GGTGGCACTGCCTTAGCCTACGAAGAGCATGTGGCTGCTGTCAAAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCAAGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGTCTAACGCA] [+] EMBL CD124123 [ GTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCTTTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATGGTAATGAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGG ] consensusID : consensus_9937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCACCTACTATTTGCACATNCTTG] [-] EMBL CD127526 [TCTACCTTAATCTTGTCGATTGGTCTTCTCAAAATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAGGTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCCAAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTGACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCGTGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACACGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCACCTACTATTTGCACATNCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9937#0 NAAGAGCAATAGGTAGGTCAAGATGATTTTTTCCTTAATCTTGTCGATTGGTCTTCTCAA 60 consensus_9937#1 ----------------------------TCTACCTTAATCTTGTCGATTGGTCTTCTCAA 32 * * **************************** consensus_9937#0 AATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAG 120 consensus_9937#1 AATGTACTGGCGGTTGGGTTGGGAACGTGTGTTTACTTGTGGAATGCTTTCACCAGCCAG 92 ************************************************************ consensus_9937#0 GTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCC 180 consensus_9937#1 GTCACTCGACTATGTGACGTTTCTGGAGAAACCGATGTTATTTCATCGGTTGCGTGGTCC 152 ************************************************************ consensus_9937#0 AAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTG 240 consensus_9937#1 AAAAAGGGTAGTCATTTAGCGATTGGAACTTATCGTGGTCATGTTCAAATATGGGATGTG 212 ************************************************************ consensus_9937#0 ACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCG 300 consensus_9937#1 ACTAAAAGTTCCTGCATACGCTCACTAAACGGACATATCGCCCGTGTCGGTGCTTTGGCG 272 ************************************************************ consensus_9937#0 TGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACA 360 consensus_9937#1 TGGAATGCTGATCTTTTGGCATCTGGCAGCAGAGACCGTTATATTCTGTTACGTGATACA 332 ************************************************************ consensus_9937#0 CGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCATCTACCTATCACAAATCCCTCT 420 consensus_9937#1 CGTGCTTCAGCCAATTCTGGTGGTGGACCCGCTGGTCACCTACTATTTGCACATNCTTG- 391 ************************************** **** * ** ** * * consensus_9937#0 AATACTTCTGTACTAACTGCTGAACTTGCTGATAGGGATGAAATTATGACTGATTTCAAT 480 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 TCCATTAGTTCACCGAGTCACATTGATCAAGTAGAAAGTGATTCAAACTATCCGCGGGCT 540 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 TCAACACCTATGGTATCGATCAGTAGCGACCTTCCGGAAGTTGATCCTCCAAGTACACCA 600 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 GCTCAAATGGATATAGACATGCTTGGGTTTCGAGATGCGGATCACGGTTCGTCATGGTCT 660 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 GCTGCAAGGACTTCAGCAAATTCCACTGTCACCCAGACCACTGCTTTACAGTCAATTGAA 720 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 AATGGGACAGATCGCCCTGTTCCTGGAGCAGTACGTGTGCTGAAGGATCATAGACAAGAG 780 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 GTATGTGGGTTAAAATGGTCTCCGGACAGCCAGTATTTAGCGTCAGGAGGTAATGACAAT 840 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 CGTCTACTCGTTTGGAGTCAACATGCACCGTCTACTGGTGGCCCTGTCTTAACCTACGAA 900 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 GAGCATGTGGCTGCTGTCAGAGCAATTGCATGGTCGCCTCATCAGCATGGATTACTCGCA 960 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 AGTGGAGGTGGTACAGCTGATCGTTGTATTAGATTCTGGAATACATTAACTGGTCAGGCT 1020 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 TTACGTAGCGTTGATACTGGAAGTCAGGTTTGTAATATTGCCTGGTCCATACATAGTAAT 1080 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 GAATTGGTCAGTACACATGGTTACTCACAGAATCAAATTCTTGTTTGGAGATATCCTAGT 1140 consensus_9937#1 ------------------------------------------------------------ consensus_9937#0 CTAACGCA 1148 consensus_9937#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||