These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1387 fasta sequence [GCCTTGGATTAGATGAAACTGGCACTGCTCTGTCAAATGCATGTGGACTTGTTGGTCAAGAGTGCGCACGTGAAGCCGCTGGTATTGTGGTAGAAATGATTAGATCAAAGAAAATGGCCGGACGTGCAGTTTTAATGGCAGGGCCCCCAGGGACTGGAAAGACTGCAATAGCTTTGGCCATTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTACGCATAAAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCGGTGCAGTCAAGCGTCAGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGAAATCACAGATAAGCTAAGGAAGGAAATCAACAAGGTTGTTAATAAATACATAGATCAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTGATGAAGTACATATGCTAGACATCGAATGTTTCACCTATCTTCATCGAGCACTCGAATCAACAATCGCACCCATCGTTATTTTTGCTACCAATCGGGGAAAATGTACTATCAGAGGCACTGAAGACATTATTTCTCCTCATGGAATCCCATTAGATTTACTAGATCGTGTTATGATCATACGCACTCTTCCTTATTCTTGTGAAGAAGTAATCCAAATCCTACGTATACGTGCACAAACTGAAGGGATAAAAGTATCCGAACAAGCATTCACTTGCCTTGCAACTGTCTCTACAGATACAACTTTACGATATGCTGTCCAACTTTTGACCCCAGCGTGTCGTCTTGCCCAACTGAGTGGACGAGATGAAGNTGAACCTTCAGATATCGAAGAAGTAAGATCTCTATTTCTTAATGCAAAGCAATCTGCCAAAATACTCACTGAACATGAAAATCAGTTTATGCGCTGAATATACGTAATGTTGAAGCGTGTGCATAATTTTGTAAACTAAAATATATGATTATTCACTNTTAAAAAAAAANAAAAAAAAAA] [-] EMBL CD116545 [GCCTTGGATTAGATGAAACTGGCACTGCTCTGTCAAATGCATGTGGACTTGTTGGTCAAGAGTGCGCACGTGAAGCCGCTGGTATTGTGGTAGAAATGATTAGATCAAAGAAAATGGCCGGACGTGCAGTTTTAATGGCAGGGCCCCCAGGGACTGGAAAGACTGCAATGGCTTTGGCCATTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTACGCATAAAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAA ] [-] EMBL CD068841 [ ACTGCAATAGCTTTGGCCATTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTACGCATAAAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACA ] [+] EMBL CD184165 [ CAATAGCTTTGGCCATTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTACGCATAAAGGAGATCAAAGAAGTCTATGGAGGAGAAGTAACCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCC ] [+] EMBL CD189362 [ CCATTTTGCCCCATGGTTGGGAGTGAGGTTTACTCCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGTGTTTGGTTTACGCATAAAGGAGATCAAAGAGGTCTATGAAGGACAAGTAACCGAGTTAACTCCGG ] [+] EMBL CD082233 [ acgagacanAACTTCAGGAGAGCGATAGGTTTACGCATTTAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCGGTGCAGTCAAGCGTCAGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGAAATCACAGATAAGCTAAGGAAGGAAATCAACAAGGTTGTTAATAAATACATAGATCAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTGATGAAGTACATATGCTAGACATCGAATGTTTCACCTATCTTCATCGAGCACTCGAATCAACAATCGCACCCATCGTTATTTTTGCTACCAATCGGGGAAAATGTACTATCAGAGG ] [+] EMBL CD083787 [ cgaggCGAGTTAACTCCGGTAGAGACGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCCGTGCAGTCAAGCGTCAGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGAAATCACAGATAAGCTAAGGAAGGAAATCAACAAGGTTGTTAATAAATACATAGATCAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTGATGAAGT ] [+] EMBL CD185600 [ AATCAGTCATGTTATCATCAGTTTGCGTACTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAGAACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCGGTGCAGTCAAGCGTCAGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGC ] [+] EMBL CD079181 [ GAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGAAATCACAGATAAGCTAAGGAAGGAAATCAACAAGGTTGTTAATAAATACATAGATCAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTGATGAAGTACATATGCTAGACATCGAATGTTTCACCTATCTTCATCGAGCACTCGAATCAACAATCGCACCCATCGTTATTTTTGCTACCAATCGGGGAAAATGTACTATCAGAGGCACTGAAGACATTATTTCTCCTCATGGAATCCCATTAGATTTACTAGATCGTGTTATGATCATACGCACTCTTCCTTATTCTTGTGAAGAAGTAATCCAAATCCTACGTATACGTGCACAAACTGAAGGGATAAAAGTATCCGAACAAGCATTCACTTGCCTTGCAACTGTCTCTACAGATACAACTTTACGATATGCTGTCCAACTTTTGACCCCAGCGTGTCGTCTTGCCCAACTGAGTGGACGAGATGAAGNTGAACCTTC ] [-] EMBL AI395453 [ CAACTTTTGACCCCGGCGTGTCGTCTTGCCCAACTGAGTGGACGAGATGAAGTTGAACCTTCAGATATCGAAGAAGTAAGATCTCTATTTCTTAATGCAAAGCAATCTGCCAAAATACTCACTGAACATGAAAATCAGTTTATGCGCTGAATATACGTAATGTTGAAGCGTGTGCATAATTTTGTAAACTAAAATATATGATTATTCACTNTTAAAAAAAAANAAAAAAAAAA] consensusID : consensus_9940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 904 fasta sequence [CCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGTAATCACAGGTGTAGTTTTATACCTTAATGCCTCCTGGCTCTTCATGCTAGTTTGTTTTCATTATATTAGCGAGTCAAAGTCTAATATTGTTTTCATCACAACGAATATTCAGTTTCATTGTTTTTTGACTTGTGAAATATCGATAGCTTATTATTGACGGTTGAGTTGAAAATCGTAAGACTGCATCCATATCAAGTGTTTAACGAGAATATTTGACAGCATATGAGTGCCAAGGTTTATAAACTACTCCAGGTTTAGGATAAGTTATTCTTGGGGACCGCCAATGCTTGCATATGGATACAGAGGTCTAGTAAATATAGGTTCGGAAACGAACACTAAGCAGTATGGTAAATCCTCTAAAAGTCTAGTGATCGGTAGTTCGAAACAGTGCTTACAAGTAATGAACTGACTGAACCAGTAGTAACTGAAACTTGGTCGAAGTTGCATCAATCAGCTTAATCCCATCAGGTCCAGAAACAGACATACTCCAAAAGCTCTCGACAATACTGTTTATTAACTAACAGGTATTTAACACAGTTAAGTACTTTCCCCAGACTCTCATCATCGTAAATTCTTTTGGTAAGTTGGTGTTTAAGATGGTTACCTGAGGTTCCCACACTTTTGTTCGGCTTTGAGAAAAAGGTCATAGTGATTTCACAGATAAATTCTATGTATTGAGTATCTACACAAGTTATTAATCCTTAATGATGAATATGTTCTTTTTTATATCCCAAAGCATAGAAAACTGCATTTCCGA] [+] EMBL CD181505 [CCCTCTCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATCTGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGCTCATGAAGCCAAAGAAGACGGTAATCACAGGTGTAGTTTTATACCTTAATGCCTCCTGGCTCTTCATGCTAGTTTGTTTTCATTATATTAGCGAGTCAAAGTCTAATATTGTTTTCATCACAACGAATATTCAGTTTCATTGTTTTTTGACTTGTGAAATATCGATAGCTTATTATTGACGGTTGAGTTGAAAATCGTAAG ] [+] EMBL CD117699 [ AATATTCAGTTTCATTGTTTTTTGACTTGTGAAATATCGATAGCTTATTATTGACGGTTGAGTTGAAAATCGTAAGACTGCATCCATATCAAGTGTTTAACGAGAATATTTGACAGCATATGAGTGCCAAGGTTTATAAACTACTCCAGGTTTAGGATAAGTTATTCTTGGGGACCGCCAATGCTTGCATATGGATACAGAGGTCTAGTAAATATAGGTTCGGAAACGAACACTAAGCAGTATGGTAAATCCTCTAAAAGTCTAGTGATCGGTAGTTCGAAACAGTGCTTACAAGTAATGAACTGACTGAACCAGTAGTAACTGAAACTTGGTCGAAGTTGCATCAATCAGCTTAATCCCATCAGGTCCAGAAACAGACATACTCCAAAAGCTCTCGACAATACTGTTTATTAACTAACAGGTATTTAACACAG ] [-] EMBL CD116745 [ TTTGACAGCATATGAGTGCCAAGGTTTATAAACTACTCCAGGTTTAGGATAAGTTATTCTTGAGGACCGCCAATGCTTGCATATGGATACAGAGGTCTAGTAAATATAGGTTCGGAAACGAACACTAAGCAGTATGGTAAATCCTCTAAAAGTCTAGTGATCGGTAGCTCGAAACAGTGCTTACAAGTAATGAACTGACTGAACCAGTAGTAACTGAAACTTGGTCGAAGTTGCATCAATCAGCTTAATCCCATCAGGTCCAGAAACAGACATACTCCAAAAGCTCTCGACAATACTGTTTATTAACTAACAGGTATTTAACACAGTTAAGTACTTTCCCCAGACTCTCATCATCGTAAATTCTTTTGGTAAGTTGGTGTTTAAGATGGTTACCTGAGGTTCCCACACTTTTGTTCGGCTTTGAGAAAAAGGTCATAGTGATTTCACAGATAAATTCTATGTATTGAGTATCTACACAAGTTATTAATCCTTAATGATGAATATGTTCTTTTTTATATCCCAAAGCATAGAAAACTGCATTTCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9940#0 GCCTTGGATTAGATGAAACTGGCACTGCTCTGTCAAATGCATGTGGACTTGTTGGTCAAG 60 consensus_9940#1 ------------------------------------------------------------ consensus_9940#0 AGTGCGCACGTGAAGCCGCTGGTATTGTGGTAGAAATGATTAGATCAAAGAAAATGGCCG 120 consensus_9940#1 ------------------------------------------------------------ consensus_9940#0 GACGTGCAGTTTTAATGGCAGGGCCCCCAGGGACTGGAAAGACTGCAATAGCTTTGGCCA 180 consensus_9940#1 ------------------------------------------------------------ consensus_9940#0 TTGCCCAGGATCTTGGTGGAAAAGTTCCATTTTGCCCCATGGTTGGGAGTGAGGTTTACT 240 consensus_9940#1 ------------------------------------------------------------ consensus_9940#0 CCTCCGAAATAAAGAAGACGGAAGTTTTGATGGAGAACTTCAGGAGAGCGATAGGTTTAC 300 consensus_9940#1 ------------------------------------------------------------ consensus_9940#0 GCATAAAGGAGATCAAAGAAGTCTATGAAGGAGAAGTAACCGAGTTAACTCCGGTAGAGA 360 consensus_9940#1 ------------------------------------------------------------ consensus_9940#0 CGGAAAGTCCAACTGGAGGTTTCGGCAAAACAATCAGTCATGTTATCATCAGTTTGCGTA 420 consensus_9940#1 ------------------------------------------------------------ consensus_9940#0 CTGCCAAAGGTGTCAAACAACTTAAATTGGACCCATGTATTTATGAGAGTTTGCAGAAAG 480 consensus_9940#1 ------------------------------------------------------------ consensus_9940#0 AACATGTTGAGGTCGGGGATGTAATTTATATCGAAGCCAACTCCGGTGCAGTCAAGCGTC 540 consensus_9940#1 ------------------------------------------------------------ consensus_9940#0 AGGGGAGATGTGATGTTTATACAGCTGAATATGATTTAGAAGCTGACGAGTATGTCCCTC 600 consensus_9940#1 -------------------------------------------------------CCCTC 5 ***** consensus_9940#0 TCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATC 660 consensus_9940#1 TCCCAAAAGGGGAAGTTCATAAAAAGAAAGATGTTGTTCAGGATGTTACACTTCATGATC 65 ************************************************************ consensus_9940#0 TGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGC 720 consensus_9940#1 TGGATGTAGCAAACGCCCGACCTCAAGGGGGCCAAGATATTGTCTCAATGATGGGCCAGC 125 ************************************************************ consensus_9940#0 TCATGAAGCCAAAGAAGACGGAAATCACAGATA-AGCTAAGGAAGGAAAT-CAACAAGGT 778 consensus_9940#1 TCATGAAGCCAAAGAAGACGGTAATCACAGGTGTAGTTTTATACCTTAATGCCTCCTGGC 185 ********************* ******** * ** * * *** * * ** consensus_9940#0 TGTTAATAAATACATAGAT-CAAGGTATCGCTGAACTTGTTCCTGGTGTGCTGTTTATTG 837 consensus_9940#1 TCTTCATGCTAGTTTGTTTTCATTATATTAGCGAGTCAAAGTCTAATATTGTTTTCATC- 244 * ** ** * * ** *** ** ** * * * ** ** consensus_9940#0 ATGAAGTACATATGCTAGACATCGAATGTTTCACCTATCTT-CATCGAGCACTCGA-ATC 895 consensus_9940#1 ACAACGAATATTCAGTTT-CATTGT-TTTTTGACTTGTGAAATATCGATAGCTTATTATT 302 * * * * ** * *** * * *** ** * * ***** ** ** consensus_9940#0 AACAATCGCACCCATCGTTATTTTTGCTACCAATCGGGGAAAATGTACTATCAGAGGCAC 955 consensus_9940#1 GACGGTTGAGTTGAAAATCGTAA--GACTGCATCCATATCAAGTGTTTAACGAGAATATT 360 ** * * * * * * ** * ** *** * *** consensus_9940#0 TGAAGACATTATTTCTCCTCATG-----GAATCCCATTAGATTTAC--TAGATCGTGTTA 1008 consensus_9940#1 TGACAGCAT-ATGAGTGCCAAGGTTTATAAACTACTCCAGGTTTAGGATAAGTTATTCTT 419 *** *** ** * * * * ** * ** **** ** * * * consensus_9940#0 TGATCATACGCACTCTTCCTTATTCTTGTGAAGAAGTAATCCAAATCC-TACGTATACGT 1067 consensus_9940#1 GGGGACCGCCAATGCTTGCATATGGATACAGAGGTCTAGTAAATATAGGTTCGGAAACGA 479 * * * *** * *** * ** ** * * ** * ** * *** consensus_9940#0 GCACAAACTGAAGGGATAAAAGTATCCGAA--CAAGCATTCACTTGCCTTGCAACTGTCT 1125 consensus_9940#1 ACACTAAGCAGTATGGTAAATCCTCTAAAAGTCTAGTGATCGGTAGT-TCGAAACAGTGC 538 *** ** * **** ** * ** ** * * * * *** ** consensus_9940#0 CTACAGATA-CAACTTTACGATA----TGCTGTCCAACTTTTGACCCCAGC-GTGTCGTC 1179 consensus_9940#1 TTACAAGTAATGAACTGACTGAACCAGTAGTAACTGAAACTTGGTCGAAGTTGCATCAAT 598 **** ** * * ** * * * * * *** * ** * ** consensus_9940#0 TTGCCCAACTGAGT--GGACGAGATGAAGNTGAACCTTCAGATATCGAAGAAGTAAGATC 1237 consensus_9940#1 CAGCTTAATCCCATCAGGTCCAGAAACAGACATACTCCAAAAGCTCTCGACAATACTGTT 658 ** ** * ** * *** ** ** * * ** * ** * consensus_9940#0 TCT---------ATTTCTTAATGCA---AAGCAATCTGCCAAAATACTCACT---GAACA 1282 consensus_9940#1 TATTAACTAACAGGTATTTAACACAGTTAAGTACTTTCCCCAGACTCTCATCATCGTAAA 718 * * * **** ** *** * * * ** * * **** * * * consensus_9940#0 T-------GAAAATCAGTTTATGCGCTGAATATACGTAATGTTGAAGCGTGTGCATAATT 1335 consensus_9940#1 TTCTTTTGGTAAGTTGGTGTTTAAGATGGTTACCTGAGGTTCCCACACTTTTGTTCGGCT 778 * * ** * ** * * * ** ** * * * * * ** * consensus_9940#0 TTGTAAACTAAAATATA-TGATTATTCACTNTTAAAAAAAAANAAAAAAAAAA------- 1387 consensus_9940#1 TTGAGAAAAAGGTCATAGTGATT--TCACAGATAAATTCTATGTATTGAGTATCTACACA 836 *** ** * *** ***** **** **** * * * * consensus_9940#0 ------------------------------------------------------------ consensus_9940#1 AGTTATTAATCCTTAATGATGAATATGTTCTTTTTTATATCCCAAAGCATAGAAAACTGC 896 consensus_9940#0 -------- consensus_9940#1 ATTTCCGA 904 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||