These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 645 fasta sequence [CGCGGACAATTGCGTTTAGGCTGTTTGCCTAAGTAGTCCTAGTAAGATAATGTTGGTGTCTGTCTATTCACAATACTTTTCATAAAAATGATTAAAAAGTCACTATTCATGCACAAGAAGACCCTCATCTTTCTCCTGCTGGCTTGTGTTACATTATATATATTATTTTGGGACCGCCTGGGTTTATCCCCTAATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTA-TTTATCACCACCGTCTTCAACTGTATCGACCGGAGAACAGTTCAAGCACCACCAACACGTTTGTATATATCCCAACAGAATTTAACGAGAATGAAGCCTACATATCGGACTTATTACG-TCGTAATGGCT-ATGTTGCTGCAATC-CTC-TCTGAAGAG-TTTGC-TGA-TGAAGCA-TTG-TTTCCGAA-TCCCAC-CTTTTCCTGTAC-ATGTGGCCGTGTAAGTGATCCTTGCATCTGTTGTGGTATTTTACAGCCCCAAG-TTTCTGGCCAGAA-TCA-TCTTTCTCCAGATTTATACCAACCTATTTTGTTGACACCTGACAATACTAAGCCAGCTCACTTCTGCATAAATACCACTTATCTTCCCAACAAAAAGCAAATAAAGATTTCTGCAGTCCTTGTAAAA] [-] EMBL CD127634 [CGCGGACAATTGCGTTTAGGCTGTTTGCCTAAGTAGTCCTAGTAAGATAATGTTGGTGTCTGTCTATTCACAATACTTTTCATAAAAATGATTAAAAAGTCACTATTCATGCACAAGAAGACCCTCATCTTTCTCCTGCTGGCTTGTGTTACATTATATATATTATTTTGGGACCGCCTGGGTTTATCCCCTAATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTAGTTTATCACCACCGTCTTCAACTGT TAGACCGGAGAACAGTTCAAGC ] [+] EMBL CD128130 [ AATTGCGTTTAGGCTGTTTGCCTAAGTAGTCCTAGTAAGATAATGTTGGTGTCTGTCTATTCACAATACTTTTCATAAAAATGATTAAAAAGTCACTATTCATGCACAAGAAGACCCTCATCTTTCTCCTGCTGGCTTGTGTTACATTATATATATTATTTTGGGACCGCCTGGGTTTATCCCCTAATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTA TTTATCACCACCGTCTTCAACTGTATCGACCGGAGAACAGTTCAAGCACCACCAACACGTTTGTATATATCCCAACAGAATTTAACGAGAATGAAGCCTACATATCGGACTTATTACG TCGTAATGGCT ATGTTGCTGCAATC CTC TCTGAAGAG TTTGC TGA TGAAGCA TTG TTTCCGAA TCCCAC CTTTTCCTGTAC ATGTGGGCGTGTAAGTGATCCTTGCATCTGGTGTGGTATTTTACAGCCCCAAG TTTCTGGCCCGAA TCA TCTTTCT ] [+] EMBL AI067632 [ CTCATCTTTCTCCTGCTGGCTTGTGTTACATTATATATATTATTTTGGGACCGCCTGGGTTTATCCCCTAATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTA TTTATCACCACCGTCTTCAACTGTATCGACCGGAGAACAGTTCAAGCACCACCAACACGTTTGTATATATCCCAACAGAATTTAACGAGAATGAAGCCTACATATCGGACTTATTACG TCGTAATGGCT ATGTTGCTGCAATC CTC TCTGAAGAG TTTGC TGA TGAAGCA TTG TTTCCGAA TCCCAC CTTTTCCTGTAC ATGTGGCCGTGTAAGTGATCCTTGCATCTGTTGTGGTATTTTACAGCCCCAAG TTTCTGGCCAGAA TCA TCTTTCTCCAGATTTATACCAACCTATTTTGTTGACACCTGACAATACTAAGCCAGCTCA ] [+] EMBL AI067814 [ TCATCTTTCTCCTGCTGGCTTGTGTTACATTATATATATTATTTTGGGACCGCCTGGGTTTATCCCCTAATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTA TTTATCACCACCGTCTTCAACTGTATCGACCGGAGAACAGTTCAAGCACCACCAACACGTTTGTATATATCCCAACAGAATTTAACGAGAATGAAGCCTACATATCGGACTTATTACG TCGTAATGGCT ATGTTGCTGCAATC CTC TCTGAAGAT TTTGC TGA TCAAGCA TTG TTTCCGAA TCCCAC CTTTTCCTGTAC ATGTGGCCGTGTAAGTGATCCTTGCATCTGTTGTGGTATTTTACAGCCCCAAG TTTCTGGCCAG ] [+] EMBL AI068034 [ TTCTCCTGCTGGCTTGTGTTACATTATATATATTATTTTGGGACCGCCTGGGTTTATCCCCTAATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTA TTTATCACCACCGTCTTCAACTGTATCGACCGGAGAACAGTTCAAGCACCACCAACACGTTTGTATATATCCCAACAGAATTTAACGAGAATGAAGCCTACATATCGGACTTATTACG TCGTAATGGCT ATGTTGCTGCAATC CTC TCTGAAGAG TTTGC TGA TGAAGCA TTG TTTCCGAA TCCCAC CTTTTCCTGTAC ATGTGGCCGTGTAAGTGATCCTTGCATCTGTTGTGGTATTTTACAGCCCCAAG TTTCTGGCCAG ] [+] EMBL AI067817 [ TTCTCCTGCTGGCTTGTGTTACATTATATATATTATTTTGGGACCGCCTGGGTTTATCCCCTAATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTA TTTATCACCACCGTCTTCAACTGTATCGACCGGAGAACAGTTCAAGCACCACCAACACGTTTGTATATATCCCAACAGAATTTAACGAGAATGAAGCCTACATATCGGACTTATTACG TCGTAATGGCT ATGTTGCTGCAATC CTC TCTGAAGAG TTTGC TGA TGAAGCA TTG TTTCCGAA TCCCAC CTTTTCCTGTAC ATGTGGCCGTGTAAGTGATCCTTGCATCTGTTGTGGTATTTTACAGCCCCAAG TTTCTGGCCAGAA TCA TCTTTCTCCAGATTTATACCAACCTATTTTGTTGACAC ] [+] EMBL CD150128 [ TAATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTA TTTATCACCACCGTCTTCAACTGTATCGACCGGAGAACAGTTCAAGCACCACCAACACGTTTGTATATATCCCAACAGAATTTAACGAGAATGAAGCCTACATATCGGACTTATTACG TCGTAATGGCT ATGTTGCTGCAATC TTC TCTGAAGAG TTTGC TGA TGAAGCA TTG TTTCCG ] [-] EMBL CD200932 [ AATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTA TTTATCACCACCGTCTTCAACTGTATCGACCGGAGAACAGTTCAAGCACCACCAACACGTTTGTATATATCCCAACAGAATTTAACGAGAATGAAGCCTACATATCGGACTTATTACG TCGTAATGGCT ATGTTGCTGCAATC CTC TCTGAAGAG TTTGC TGA TGAAGCA TTG TTTCCGAA TCCCAC CTTTTCCTGTAC ATGTGGCCGCGTAAGTGATCCTTGCATCTGTTGTGGTA ] [-] EMBL CD170676 [ AATATTTACGACCGTCCGTTACCGGATTACATACTTGCAGACGATCGTGCTTCTCGTA TTTATCACCACCGTCTTCAACTGTATCGACCGGAGAACAGTTCAAGCACCACCAACACGTTTGTATATATCCCAACAGAATTTAACGAGAATGAAGCCTACATATCGGACTTATTACG TCGTAATGGCT ATGTTGCTGCAATC CTC TCTGAAGAG TTTGC TGA TGAAGCA TTG TTTCCGAA TCCCAC CTTTTCCTGTAC ATGTGGCCGTGTAAGTGATCCTTGCATCTGTTGTGGTATTTTACAGCCCCAAG TTTCTGGCCAGAA TCA TCTTTCTCCAGATTTATACCAACCTATTTTGTTGACACC ] [-] EMBL CD177711 [ AAGCCTACATATCGGACTTATTACGTTCGTAATGGCTAATGTTGCTGCAATCACTCATCTGAAGAGTTTTGCTTGATTGAAGCATTTGTTTTCCGAATTCCCACAATTTTCCTGTACAATGTGGCCGTGTAAGTGATCCTTGCATCTGTTGTGGTATTTTACAGCCCCAAGTTTTCTGGCCAGAATTCATTCTTTCTCCAGATTTTTACCAACCTATTTTGTTGACACCTGACAATACTAAGCCAGCTCACTTCTGCATAAATACCACTTTTCTTCCCAACAAAAAGCAAATAAAGATTTCTGCAGTCCTTGTAAAA] [+] EMBL CD184512 [ ATTACG TCGTAATGGCT ATGTTGCTGCAATC CTC TCTGAAGAG TTTGC TGA TGAAGCA TTG TTTCCGAA TCCCAC CTTTTCCTGTAC ATGTGGCCGTGTAAGTGATCCTTGCATCTGTTGTGGTATTTTACAGCCCCAAG TTTCTGGCCAGAA TCA TCTTTCTCCAGGTTTATACCAACCTATTTTGTTGACACCTGACAATACTAAGCCAGCTCACTTCTGCATAAATACCACTTATCTTCCCAACAAAAAGCAAATAAAGATTTCTGCAGTCCTTGTAA ] [-] EMBL CD177734 [ TGAAGCA TTG TTTCCGAA TCCCAC CTTTTCCTGTAC ATGTGGCCGTGTAAGTGATCCTTGCATCTGTTGTGGTATTTTACAGCCCCAAG TTTCTGGCCAGAA TCA TCTTTCTCCAGATTTATACCAACCTATTTTGTTGACACCTGACAATACTAAGCCAGCTCACTTCTGCATAAATACCACTTATCTTCCCAACAAAAAGCAAATAAAGATTTCTGCAGTCCTTGTAAAA] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||