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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 813 fasta sequence
[GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACT-GTCATC-TGG-AAACGCGTATTCCTCAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATAATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATAACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACATACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGTGGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCC-TCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGCAGACCTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGNNTAANGGAGATTTAT-AGTG-ATATATAGACAGTTTTGGT--AAATACGAT-AACTAGTCGAA--TTTTATCTGTAC-AAAGC-CCTCTTA-CATACAAAAGT]
[+] EMBL CD081423 [GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACT GTCATC TGG AAACGCGTATTCCTCAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATAATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATAACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACATACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGTGGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCC TCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGCAGACCTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGNNTAANGGAGATTTAT AGTG ATATATAGACAGTTTTGGT AAATACGAT AACTAGTCGAA TTTTATCTGTAC AAAGC CCTCTTA CATACAAA ]
[+] EMBL CD062371 [ ACTGGTCAGCTTGGAAAACGCGTATTCGTCAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATAATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATAACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACATACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGTGGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAAATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTG ]
[+] EMBL AA791334 [ CTGTAGATGATGCTTTCGCACAATTAGGA TTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCATCGTTTATACAAAGGCTTACCATCTGTTGTACATAGTATTAACTTTCACTACACAAATTTATAT ]
[-] EMBL CD075249 [ AGATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCC TCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGT]
consensusID : consensus_9949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 452 fasta sequence
[TCTTTGGTGATAGTAATAATAAATTTGTCCCACAGATTGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI067998 [TCTTTGGTGATAGTAATAATAAATTTGTCCCACAGATTGCAACATATGTTCTGTATTATGTTCTAAATATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCTTCGTTTGTACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTGTCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068247 [ ACAGATTGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068022 [ TGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI067894 [ GCAACATATGTTCTGTTGTATTTCATAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTTGAATGGTTCGTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCAATACACAAATTTATATATGCGTCACCGTGAAGGTGATCCTCCGAAAATTTCTCAGCCAAATGAAATCAAAGGTGTTTGGACTCCGACTGCAACATGGCCGCCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACGTCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI067351 [ AGAGTCAGCACATGTTTCACGAGGTCGAATGTTTCATCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATGTACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068100 [ CGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068089 [ TTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068111 [ GTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9949#0 GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACTGTCATCTGGAAACGCGTATTCCT 60
consensus_9949#1 ------------------------------------------------------------
consensus_9949#0 CAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATA 120
consensus_9949#1 ------------------------------------------------------------
consensus_9949#0 ATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATA 180
consensus_9949#1 ------------------------------------------------------------
consensus_9949#0 ACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACA 240
consensus_9949#1 ------------------------------------------------------------
consensus_9949#0 TACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGT 300
consensus_9949#1 ------------------------------------------------------------
consensus_9949#0 GGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGAT 360
consensus_9949#1 ------------------------------------------------------------
consensus_9949#0 TTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAG 420
consensus_9949#1 ------------------------TCTTTG--GTGATAGTAATAATAAAT-TTGTCCCAC 33
** *** * * * ** * * * *** * *
consensus_9949#0 CAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGAT----AGAGTCAGCACAT 476
consensus_9949#1 AGATTGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACAT 93
** * * * * * * * ** **** * *************
consensus_9949#0 GTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATG 536
consensus_9949#1 GTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATG 153
************************************************************
consensus_9949#0 ATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATT 596
consensus_9949#1 ATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATT 213
************************************************************
consensus_9949#0 TATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGC 656
consensus_9949#1 TATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGC 273
**************************************** ******************
consensus_9949#0 AGACCTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGA 716
consensus_9949#1 AGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGA 333
******* ****************************************************
consensus_9949#0 CGGNNTAANGGAGATTTATA-GTGA-TATATAGACAGTTTTGGTAAA--TACGATAA-CT 771
consensus_9949#1 CGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACT 393
*** ** *********** **** *************** ***** ******** **
consensus_9949#0 AGTCGAA--TTTTATCTGTACAAAGCC--CTCTTAC-ATACAAAAGT------------ 813
consensus_9949#1 AGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT 452
******* *************** * ******* **********
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||