These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [GAAGAAGCGCTGGAAGTGGATAGGACACACATTTAGGAAATCACTCAACTGTGTCACAAGGCAAGCCCTCACATGGAATCCTGAAGGCCAAATGAGAAGAGGAAGACCAAAGAACACGTTAGGCCGAGAAATGGAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAACTAGAAAAGAAGGCCTAGAACAGAGTGGATCGGAGAATGCTGGTTAGCGGCTTATGCTCCATTGGGAGTAACAGGCAGGTGTATTCGCTCCATCATGTCTAGATCATGAGATTTTAACCAAAAATAATTGGGTACATAAAATGATTGGAACAATAAGTTTAGTGAATGCAATCAAATCATGGGATATTGAATTAGAAAAACACTGGGTCAAACAAAAATTATTATATTTCTCAACACATTACCCTAATGTTTTACTTAAAGCCCAACAATGGAATGCAAAGAATCATCAACAATCTGACCTAAAAGAAAGTATGACTAAAATCACATCAACCACAATTACTCCTACAGTAA] [+] EMBL CD095641 [GAAGAAGCGCTGGAAGTGGATAGGACACACATTTAGGAAATCACTCAACTGTGTCACAAGGCAAGCCCTCACATGGAATCCTGAAGGCCAAATGAGAAGAGGAAGACCAAAGAACACGTTAGGCCGAGAAATGGAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAACTAGAAAAGAAGGCCTAGAACAGAGTGGATCGGAGAATGCTGGTTAGCGGCTTATGCTCCATTGGGAGTAACAGGCAGGTGTATTCGCTCCATCATGTCTAGATCATGAGATTTTAACCAAAAATAATTGGGTACATAAAATGATTGGAACAATAAGTTTAGTGAATGCAATCAAATCATGGGATATTGAATTAGAAAAACACTGGGTCAAACAAAAATTATTATATTTCTCAACACATTACCCTAATGTTTTACTTAAAGCCCAACAATGGAATGCAAAGAATCATCAACAATCTGACCTAAAAGAAAGTATGACTAAAATCACATCAACCACAATTACTCCTACAGTAA] consensusID : consensus_996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [CAAAGTTTGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGCGCCTGTTTCTGATTTCTTACTCCGCTGGAGTCTGGTTTCTTCTCTCTCACAGTAGGTTGTTGCTGATAGTGTCTGGCCAATGGATCCGAAGTATTTCGTGTAGACAAGCGTTAATAAACACCTGTATCTTCTGGATGATGGCTAAGGACTCTACATAATATTATCTATAATGGCAGTACCAAATAAA] [+] EMBL CD067533 [CAAAGTTTGGTGATTTCCTCAATGTGTGTCCTATCCACTTCCAGCGCCTGTTTCTGATTTCTTACTCCGCTGGAGTCTGGTTTCTTCTCTCTCACAGTAGGTTGTTGCTGATAGTGTCTGGCCAATGGATCCGAAGTATTTCGTGTAGACAAGCGTTAATAAACACCTGTATCTTCTGGATGATGGCTAAGGACTCTACATAATATTATCTATAATGGCAGTACCAAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_996#0 GAAGAAGCGCTGGAAGTGGATAGGACACACATTTAGGAAATCACTCAACTGTGTCACAAG 60 consensus_996#1 ------------------------------------------------------------ consensus_996#0 GCAAGCCCTCACATGGAATCCTGAAGGCCAAATGAGAAGAGGAAGACCAAAGAACACGTT 120 consensus_996#1 ------------------------------------------------------------ consensus_996#0 AGGCCGAGAAATGGAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAACTAGAAAA 180 consensus_996#1 ------------------------------------------------------------ consensus_996#0 GAAGGCCTAGAACAGAGTGGATCGGAGAATGCTGGTTAGCGGCTTATGCTCCATTGGGAG 240 consensus_996#1 ------------------------------------CAAAGTTTGGTGATTTCCTCAATG 24 * * * ** * * * consensus_996#0 TAACAGGCAGGTGTATTCGCTCCATCATGTCTAGATCATGAGATTTTAACCAAAAATAAT 300 consensus_996#1 TGT------GTCCTATCCACTTC--CAGCGCCTGTTTCTGATTTCTTACTCCGCTGGAGT 76 * * *** * ** * ** * * * *** * *** * * * consensus_996#0 TGGGTACATAAAATGATTGGAACAATAAGTTTAGTGAATGCAATCAAATCATGGGATATT 360 consensus_996#1 CTGGTTTCT----TCTCTCTCACAGTAGGTT--GTTGCTG--ATAGTGTC--TGGCCAAT 126 *** * * * *** ** *** ** ** ** ** ** * * consensus_996#0 GAATTAGAAAAACACTGGGTCAAACAAAAATTATTATATTTCTCAACACATTACCCTAAT 420 consensus_996#1 GGATCCGAAGTATTTCGTGT-AGACAAGCGTTAATAAACACCT----GTATCTTCTGGAT 181 * ** *** * * ** * **** *** ** * ** ** * ** consensus_996#0 GTTTTACTTAAAGCCCAACAATGGAATGCAAAGAATCATCAACAATCTGACCTAAAAGAA 480 consensus_996#1 GATG-GCTAAGGACTCTACATAATATTATCTATAAT----GGCAGTACCAAATAAA---- 232 * * ** * * * *** * * * *** ** * * **** consensus_996#0 AGTATGACTAAAATCACATCAACCACAATTACTCCTACAGTAA 523 consensus_996#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||