These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 691 fasta sequence [TTAAATGACCAAATTCTAAATGAATATGAGGCTTCTTATATTTATGACCATATGGTGTCTTACCTATCCAGGCCAGAGGTTGGATTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAAGAATTGGAGCATGCCCGTAAATTCAGTGAATTTGTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTT-AAAAAAGATCGTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTTTTTTTATCATTTATTTGGATGCATTGATAAGATATTACTTCAAGTGATTTGTTAATTTGAA] [+] EMBL CD139081 [TTAAATGACCAAATTCTAAATGAATATGAGGCTTCTTATATTTATGACCATATGGTGTCTTACCTATCCAGGCCAGAGGTTGGATTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAAGAATTGGAGCATGCCCGTAAATTCAGTGAATTTGTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTT AAAAAAGATCGTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCA ] [+] EMBL CD140642 [ TCCTGAAAAATATTTTAAAAAAAGATCGTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGAT ] [-] EMBL CD140632 [ AAAGATCGTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTTTTTTTATCATTTATTTGGATGCATTGATA ] [-] EMBL CD140500 [ CAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTTTTTTTATCATTTATTTGGATGCATTGATA ] [+] EMBL CD192682 [ GCGCTGCATAAATCAGCATTGAAAATGAATGATGCAACTACACAAGATACTTTGGACGATTTTCTAAAAGAACAAATGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGAGGTGTCTATCTGATGGATAAAGAATTTAGGTGAACTGGTAATCTTTTTGCAACGATAAGACTATGTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTATTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGT ] [+] EMBL CD191987 [ GCACTGCATAAATTAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAA ] [-] EMBL AI976029 [ GCATCGATAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAGCAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCGTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTTTTTTTATCATTTATTTGGATGCATTGATAAGATATTACTTCAAGTGATTTGTTAATTTGAA] [+] EMBL CD192341 [ GCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAACAAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTGCTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGACTATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGACAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTT ] consensusID : consensus_9973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 489 fasta sequence [GTTTAACTTTACAGTTAGTTAACATTACTACAATTTATACAAGCGATTGTTCGAAGAAATTTCATTTATATTAGGGTTCATTCAATTTGTATGAAGATCATGATGTGGATGATAATATTTGCTAGTTGGATTCTTGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAG-ATAACCAAGTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAGGCTTTTTATATTTATGACCATATGGTGTCTTACCTATCTAGGCCAGAGGTTGGATTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAA-GAATTGGAGCATGCCCGTAAATTCAGT-GAATTT-GTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAA] [+] EMBL CD083823 [GTTTAACTTTACAGTTAGTTAACATTACTACAATTTATACAAGCGATTGTTCGAAGAAATTTCATTTATATTAGGGTTCATTCAATTTGTATGAAGATCATGATGTGGATGATAATATTTGCTAGTTGGATTCTTGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAG ATAACC ATTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAGGCTTTTTATATTTATGACCATATGGTGTCTTACCTATCTAGGCCAGAGGTTGGATTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAA GAATTGGAGCATGCCCGTAAATTCAGT GAATTT GTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGATACAGCAATTGGAAAAGAACTTGAA] [+] EMBL SM777 [ TCGAAGAAATTTCATTTATATTAGGGTTCATTCAATTTGTATGAAGATCATGATGTGGATGATAATATTTGCTAGTTGGATTCTTGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAGCATNACCAAGTGGAAGAGGGATTAAATGACCAANTTCTAAATGAATATGAGGCTTTTTATATTTATGACCATATGGTGTCTNACCTATCTAGGNCAGAGGTTGGATTGTCAGGNTTCGCGAAATTNNTCCGNGAAAGTGCAAACGAAGGAATTGGAGCATGCCCGTAANTTCAGTGGAATTTGGTCAATAA ] [+] EMBL CD064573 [ GCTAGTTGGA TC TGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAG ATAACCAAGTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAGGCTTTTTATATTTATGACCATATGGTGTCTTACCTATCTAGGCCAGAGGTTGGGGTGTCAGGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAA GAATTGGAGCATGCCCGTAAATTCAGT GAATTT GTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAATTGAT ] [+] EMBL CD190822 [ GCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCCATTGCTTTAG ATAACCAAGTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAGGCTTTTTATATTTATGACCGTGTGGTGTCTTACCTATCTAGGCCAGAGGTTGGATTGTCAGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9973#0 ------------------------------------------------------------ consensus_9973#1 GTTTAACTTTACAGTTAGTTAACATTACTACAATTTATACAAGCGATTGTTCGAAGAAAT 60 consensus_9973#0 ------------------------------------------------------------ consensus_9973#1 TTCATTTATATTAGGGTTCATTCAATTTGTATGAAGATCATGATGTGGATGATAATATTT 120 consensus_9973#0 ------------------------------------------------------------ consensus_9973#1 GCTAGTTGGATTCTTGCTGTGTATGCTCCGATTCAAATTCACGGTGAAGTTGAGGACCCC 180 consensus_9973#0 ------------------------------TTAAATGACCAAATTCTAAATGAATATGAG 30 consensus_9973#1 ATTGCTTTAGATAACCAAGTGGAAGAGGGATTAAATGACCAAATTCTAAATGAATATGAG 240 ****************************** consensus_9973#0 GCTTCTTATATTTATGACCATATGGTGTCTTACCTATCCAGGCCAGAGGTTGGATTGTCA 90 consensus_9973#1 GCTTTTTATATTTATGACCATATGGTGTCTTACCTATCTAGGCCAGAGGTTGGATTGTCA 300 **** ********************************* ********************* consensus_9973#0 GGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAAGAATTGGAGCATGCCCGTAAATTC 150 consensus_9973#1 GGTTTCGCGAAATTTTTCCGTGAAAGTGCAAACGAAGAATTGGAGCATGCCCGTAAATTC 360 ************************************************************ consensus_9973#0 AGTGAATTTGTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTAAAAAAGATC 210 consensus_9973#1 AGTGAATTTGTCAATAAACGAAACTCAAAGGTTGTCCTGAAAAATATTTTA--------- 411 *************************************************** consensus_9973#0 GTATCAATGAACTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAA 270 consensus_9973#1 -----------CTTGCATCTTCAGGTGTACCAATGGATTTTAAAAATATTCATGAAGTAA 460 ************************************************* consensus_9973#0 TTGATACAGCAATTGGAAAAGAACTTGAAGTCACTGCACACATCAATGCACTGCATAAAT 330 consensus_9973#1 TTGATACAGCAATTGGAAAAGAACTTGAA------------------------------- 489 ***************************** consensus_9973#0 TAGCATCGAAAATGAATGATGCAACTACACAAGATTTTTTGGACGATTTTCTACAAGAAC 390 consensus_9973#1 ------------------------------------------------------------ consensus_9973#0 AAGTGAATTCTGTAAGTAAACTAAGAGAAATGCGTGCTCGACTACATTTGGATAATAGTG 450 consensus_9973#1 ------------------------------------------------------------ consensus_9973#0 CTGTTTATCTGATGGATAAAGAATTTCGTTGAACTGGTAATCTTTTTGCAACAATAAGAC 510 consensus_9973#1 ------------------------------------------------------------ consensus_9973#0 TATCTTTCATTTTTCTTCAAAATTGATAATTATTTCCTGCAATTATATGCAAACTGTAGA 570 consensus_9973#1 ------------------------------------------------------------ consensus_9973#0 CAATCATCACCCTTTTAGTATAAAAAAGGTTACACTGATTTTAAACATGCTTGATGTCTT 630 consensus_9973#1 ------------------------------------------------------------ consensus_9973#0 TTTTTATCATTTATTTGGATGCATTGATAAGATATTACTTCAAGTGATTTGTTAATTTGA 690 consensus_9973#1 ------------------------------------------------------------ consensus_9973#0 A 691 consensus_9973#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||