These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 998 fasta sequence [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT--TT--TTT-----TCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG-TCCTGATGAC-ACATGAAAATATCTCCTCAATGGCAGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGTCGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATT-CCCTTGATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC-TCG-CGAATTTCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGTTCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG] [+] EMBL AI977677 [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT TT TTT TCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGA ] [+] EMBL AI976873 [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTT TT TTT TCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGG ] [+] EMBL AI395486 [ TTTTTTTTTTTTTTTTGTTTAATTAATTTAAAAGTCGGGATGATAATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTTGGGTTGG TTTTCCACTGACC AATTGCTCCTCTGTA TCACTCCCGA ] [+] EMBL CD075103 [ AATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACTCAAATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAAAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAAAAAAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG T ] [-] EMBL CD161059 [ TTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTTATATAAATCATACTCAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCATCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAGTGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAGCCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACC ] [-] EMBL CD063085 [ AGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCAAGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTCTGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTTTGTTCCTGATGACAACATGAAA ] [-] EMBL CD081274 [ TTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATATACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG TCCTGATGAC ACATGAAAATATCTCCTCAATGGCAGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGTCGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATTCCCCTTGATGCAGAAATACTATTCCG ] [+] EMBL CD149727 [ AGCGAACACATGTGAACCCCAAAGACCAACTGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGTTGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATCTATTTGAGACATTGGGTACTTTTCTG TCCTGATGAC ACATGAAAATATCTCCTCAATGGCAGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGTCGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATCACCTCTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATT CCCTTGATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATTTACTTCG CGAATTTCAT ] [-] EMBL SMAA69247 [ GTA CAT AC TTTACTCTAGGAGCATGGG CCAACCACGGATGCAATCACCTTGGTATT CCCTTGATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC TCGTCGAATTTCATT ] [+] EMBL CD148128 [ GATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC TCGTCGAATTTCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGTTCAAAT ] [-] EMBL CD097531 [ ATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTAC TCGTCGAATTTCATTTGGTCTGCGACCATCAACTCTCCTACCGTTATAAAACATTTCAGCCATCACACGTTCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG] consensusID : consensus_9986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [AGAGCGATGGAGATGAATTATTTCAAGAAAAATATGGGTGTGAGACATTGCGGGTTTGTGTGTCAGAGTGACACATGAAAATATATCGTCAATGGCAGGAGCGAGATCAGTCGTTGATCTATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGTCTATGCAAAAGGAGGTTTAGTAAATTAACACGTTATGGTTGCACCATCTGAAGAACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCT] [-] EMBL CD068998 [AGAGCGATGGAGATGAATTATTTCAAGAAAAATATGGGTGTGAGACATTGCGGGTTTGTGTGTCAGAGTGACACATGAAAATATATCGTCAATGGCAGGAGCGAGATCAGTCGTTGATCTATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGTCTATGCAAAAGGAGGTTTAGTAAATTAACACGTTATGGTTGCACCATCTGAAGAACCATCACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9986#0 ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGATGATA 60 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 ATTTATATTGTAACTTTACATGGTCAGTCGTGAAACATTGCATTTCATATAAATCATACT 120 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 CAGATAATATATCTGGTATAGCTTAAAATGTTCTTTTATAAAGGTGAATCACGTTAGTCA 180 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 TCTGGTGATAAAACCACTACGTACACGGCCCCGTAACCAATAAGAAAATTCCTTTTGAAG 240 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 TGTTTGAGCTACCTTCACAGCTTCTGTTATGAGTGGTTGTAGTCTCTCAACAGGTAACCA 300 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 AGAAGAGAGACGTGTATGAAGGATTTGAGGTTGGCTTTTCCACTGACCTATTTGCTCCTC 360 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 TGTATTCACTCCGGAAAGCAGGTGAACATTGGGAAGACAAACAACGGTTAACTGTGATAT 420 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 ACGTGGATTCTCCTCAAAGCGACAAAGGTCAGCGAACACATGTGAACCCCAAAGACCAAC 480 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 TGTAGCTGCACTGACGAGGCAATCCATTTCAATCCCAGCATCAGTTAAGGCAAGTGTGGT 540 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 TGCATTTACAGCACAAGCAAACTCAGAGCCATCTGACTGAATAACTTCAAGAAAAATATC 600 consensus_9986#1 ------------------------AGAGCGATGGAGATGAATTATTTCAAGAAAAATATG 36 ***** ** ***** * ************** consensus_9986#0 TATTTGAGACATTGGGTACTTTTCTGTCCTGATGACACATGAAAATATCTCCTCAATGGC 660 consensus_9986#1 GGTGTGAGACATTGCGGGTTTGTGTGTCAGAGTGACACATGAAAATATATCGTCAATGGC 96 * ********** * ** * **** **************** ** ******** consensus_9986#0 AGTAGCAAAATCATTCGTTGATCTATCTTTTGATGACAGTTTGCGACGCTCCCCTGAAGT 720 consensus_9986#1 AGGAGCGAGATCAGTCGTTGATCTATCTTTTAATAACAGTTTGGAGCGCTCCCTTGAAGT 156 ** *** * **** ***************** ** ******** ******* ****** consensus_9986#0 CGATGCAAAAGGAGGCTTAGTAAATTGACACGTTATCGTTGCACCATCTGGAGTACCATC 780 consensus_9986#1 CTATGCAAAAGGAGGTTTAGTAAATTAACACGTTATGGTTGCACCATCTGAAGAACCATC 216 * ************* ********** ********* ************* ** ****** consensus_9986#0 ACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCTTGGTATTCCCTTG 840 consensus_9986#1 ACCTTTTACTCTAGGAGCATGGGGCCCAACCACGGATGCAATCACCT------------- 263 *********************************************** consensus_9986#0 ATGCAGAAATACTATTCCGTCAGAATAACCCGAGCCAAACTGACAATCTACTCGCGAATT 900 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 TCATTTGGTCTGCGACCGTCAACTCTCCTACCGTTATAAAATATTTCAGCCATCACACGT 960 consensus_9986#1 ------------------------------------------------------------ consensus_9986#0 TCAAATGCTTCTCATTTTCCGAAGGACATACACAACTG 998 consensus_9986#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||