cluster # 999

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Schistosoma mansoni
cluster # 999 cluster # 999 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_999#0 length = 394 sequences # 1

consensus_999#1 length = 369 sequences # 1

consensusID : consensus_999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [TATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCTGAAAGCTCTTCTCCAACTTCATCATTCGACAAGTGAAAAAATGTTTCCCCAATAAGATATGGATGTAAGCTCTCTTCGACGACAACTAACTCATCCTCTGCATCATTTAGATTTGCCAGCTCCTTTTTTTTCTGATCGTATTCGGACGTATAATCTTTAAATTTTAAGTTCCATGTTGCAAAGCTGTTTATCCTTTGTTGATCACCATGAGNTACTTTCATATCTTCCGACAT]

[+] EMBL CD200398             [TATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCTGAAAGCTCTTCTCCAACTTCATCATTCGACAAGTGAAAAAATGTTTCCCCAATAAGATATGGATGTAAGCTCTCTTCGACGACAACTAACTCATCCTCTGCATCATTTAGATTTGCCAGCTCCTTTTTTTTCTGATCGTATTCGGACGTATAATCTTTAAATTTTAAGTTCCATGTTGCAAAGCTGTTTATCCTTTGTTGATCACCATGAGNTACTTTCATATCTTCCGACAT]




>consensus_999#0
TATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCACTCACATCTCT
CGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCT
TCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCTGAAAGCTCTTCTCCAACTT
CATCATTCGACAAGTGAAAAAATGTTTCCCCAATAAGATATGGATGTAAGCTCTCTTCGA
CGACAACTAACTCATCCTCTGCATCATTTAGATTTGCCAGCTCCTTTTTTTTCTGATCGT
ATTCGGACGTATAATCTTTAAATTTTAAGTTCCATGTTGCAAAGCTGTTTATCCTTTGTT
GATCACCATGAGNTACTTTCATATCTTCCGACAT

consensusID : consensus_999#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [CCCCAACCCTACACCCCCGTTTTTCCTCCTGAAGTCATCGACCAGCCATCTCCTCGCTACCTACCGCCACACTCACTACAATAACTTATACTACCGCTTTCGTCAGTACACTACCACTCCCATATACACTCGCTCGATCACATCTCGCGATACAACTACACCTCTTATCAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGC]

[-] EMBL CD155477             [CCCCAACCCTACACCCCCGTTTTTCCTCCTGAAGTCATCGACCAGCCATCTCCTCGCTACCTACCGCCACACTCACTACAATAACTTATACTACCGCTTTCGTCAGTACACTACCACTCCCATATACACTCGCTCGATCACATCTCGCGATACAACTACACCTCTTATCAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGC]




>consensus_999#1
CCCCAACCCTACACCCCCGTTTTTCCTCCTGAAGTCATCGACCAGCCATCTCCTCGCTAC
CTACCGCCACACTCACTACAATAACTTATACTACCGCTTTCGTCAGTACACTACCACTCC
CATATACACTCGCTCGATCACATCTCGCGATACAACTACACCTCTTATCAGTCCACTCTC
TCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTG
TCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTC
AAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCT
CTCCATCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_999#0      ------------------------------------------------------------
consensus_999#1      CCCCAACCCTACACCCCCGTTTTTCCTCCTGAAGTCATCGACCAGCCATCTCCTCGCTAC 60
                                                                                 

consensus_999#0      --------------------------TATACTCCCG-TCTAGTCAGTACACTCCAACTCA 33
consensus_999#1      CTACCGCCACACTCACTACAATAACTTATACTACCGCTTTCGTCAGTACACTACCACTCC 120
                                               ****** *** * * *********** * **** 

consensus_999#0      AAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTC 93
consensus_999#1      CATATACACTCGCTCGATCACATCTCGCGATACAACTACACCTCTTATCAGTCCACTCTC 180
                      * ************  ********* *******************  ************

consensus_999#0      TCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTG 153
consensus_999#1      TCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTG 240
                     ************************************************************

consensus_999#0      TCGCCGCTGAAAGCTCTTCTCCAACTTCATCATTC--GACAAGTGAAAAAATGTTTCCCC 211
consensus_999#1      TCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTC 300
                     *******      * *  *  ***   *   * **  * * *** *  * *      * *

consensus_999#0      AATAAGATATGGATGTAAGCTCTCTTCGACGACAACTAACTCATCCTCTGCATCATTTAG 271
consensus_999#1      AAAAATACACTCGCTCACTCACATCTCT-CGATA--CAACTACACCTCTTCACAGTCCAC 357
                     ** ** * *       *  * *   **  *** *   ****   ***** **   *  * 

consensus_999#0      ATTTGCCAGCTCCTTTTTTTTCTGATCGTATTCGGACGTATAATCTTTAAATTTTAAGTT 331
consensus_999#1      TCTCTCCATCGC------------------------------------------------ 369
                       *  *** * *                                                

consensus_999#0      CCATGTTGCAAAGCTGTTTATCCTTTGTTGATCACCATGAGNTACTTTCATATCTTCCGA 391
consensus_999#1      ------------------------------------------------------------
                                                                                 

consensus_999#0      CAT 394
consensus_999#1      ---