These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [TATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCTGAAAGCTCTTCTCCAACTTCATCATTCGACAAGTGAAAAAATGTTTCCCCAATAAGATATGGATGTAAGCTCTCTTCGACGACAACTAACTCATCCTCTGCATCATTTAGATTTGCCAGCTCCTTTTTTTTCTGATCGTATTCGGACGTATAATCTTTAAATTTTAAGTTCCATGTTGCAAAGCTGTTTATCCTTTGTTGATCACCATGAGNTACTTTCATATCTTCCGACAT] [+] EMBL CD200398 [TATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCTGAAAGCTCTTCTCCAACTTCATCATTCGACAAGTGAAAAAATGTTTCCCCAATAAGATATGGATGTAAGCTCTCTTCGACGACAACTAACTCATCCTCTGCATCATTTAGATTTGCCAGCTCCTTTTTTTTCTGATCGTATTCGGACGTATAATCTTTAAATTTTAAGTTCCATGTTGCAAAGCTGTTTATCCTTTGTTGATCACCATGAGNTACTTTCATATCTTCCGACAT] consensusID : consensus_999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CCCCAACCCTACACCCCCGTTTTTCCTCCTGAAGTCATCGACCAGCCATCTCCTCGCTACCTACCGCCACACTCACTACAATAACTTATACTACCGCTTTCGTCAGTACACTACCACTCCCATATACACTCGCTCGATCACATCTCGCGATACAACTACACCTCTTATCAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGC] [-] EMBL CD155477 [CCCCAACCCTACACCCCCGTTTTTCCTCCTGAAGTCATCGACCAGCCATCTCCTCGCTACCTACCGCCACACTCACTACAATAACTTATACTACCGCTTTCGTCAGTACACTACCACTCCCATATACACTCGCTCGATCACATCTCGCGATACAACTACACCTCTTATCAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_999#0 ------------------------------------------------------------ consensus_999#1 CCCCAACCCTACACCCCCGTTTTTCCTCCTGAAGTCATCGACCAGCCATCTCCTCGCTAC 60 consensus_999#0 --------------------------TATACTCCCG-TCTAGTCAGTACACTCCAACTCA 33 consensus_999#1 CTACCGCCACACTCACTACAATAACTTATACTACCGCTTTCGTCAGTACACTACCACTCC 120 ****** *** * * *********** * **** consensus_999#0 AAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTC 93 consensus_999#1 CATATACACTCGCTCGATCACATCTCGCGATACAACTACACCTCTTATCAGTCCACTCTC 180 * ************ ********* ******************* ************ consensus_999#0 TCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTG 153 consensus_999#1 TCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTG 240 ************************************************************ consensus_999#0 TCGCCGCTGAAAGCTCTTCTCCAACTTCATCATTC--GACAAGTGAAAAAATGTTTCCCC 211 consensus_999#1 TCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAACTC 300 ******* * * * *** * * ** * * *** * * * * * consensus_999#0 AATAAGATATGGATGTAAGCTCTCTTCGACGACAACTAACTCATCCTCTGCATCATTTAG 271 consensus_999#1 AAAAATACACTCGCTCACTCACATCTCT-CGATA--CAACTACACCTCTTCACAGTCCAC 357 ** ** * * * * * ** *** * **** ***** ** * * consensus_999#0 ATTTGCCAGCTCCTTTTTTTTCTGATCGTATTCGGACGTATAATCTTTAAATTTTAAGTT 331 consensus_999#1 TCTCTCCATCGC------------------------------------------------ 369 * *** * * consensus_999#0 CCATGTTGCAAAGCTGTTTATCCTTTGTTGATCACCATGAGNTACTTTCATATCTTCCGA 391 consensus_999#1 ------------------------------------------------------------ consensus_999#0 CAT 394 consensus_999#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||