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Schistosoma mansoni
cluster # 9992 cluster # 9992       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9992#0 length = 921 sequences # 10  
consensus_9992#1 length = 426 sequences # 1  
consensus_9992#2 length = 287 sequences # 1  

consensusID : consensus_9992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 921
fasta sequence
                              [TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTATCCGTCTTGTCTTTGAGCGCGG]

[+] EMBL CD188982             [TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD159226             [         GCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCANGATGAGTACGAACGTGTAGTTAAA                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD152673             [         GCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATCTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCATAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BG930245             [                              gTCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCC AAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAAT ACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCCCAatccat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD155343             [                                                                                                                                                                                                    TATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGA                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD188748             [                                                                                                                                                                                                                                                                                                                                                                                          GCANAATGTCAGGACGATCCTTNTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTA                                                                                                                   ]
[-] EMBL CD190059             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAAAGTGTAGTTAAATCACTCGTTAAAGGTACTCACGAGGAGGGTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTTTAAAACATTTTATCAATGTGATGATGTAGATGGACTATTTGATTATGATGATCATGGCGAATACT                                                                                                                                                                                                                                           ]
[-] EMBL CD094292             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGT                                            ]
[-] EMBL CD181318             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACGAGNAGGCTAACAAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAACGAATGTAGCCGTGTTACATCACCAA                               ]
[+] EMBL CD063134             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTATCCGTCTTGTCTTTGAGCGCGG]


>consensus_9992#0 TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAA AGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGAT GGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGAC TTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAG TCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGA AGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATC TGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATT GAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTG GAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGC TACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTG TGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATC TGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAAC TGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGAT AGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAG AGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTAT CCGTCTTGTCTTTGAGCGCGG



consensusID : consensus_9992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence
                              [ATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGTTAGCATGAATCTCACTAACTTTATTCGTTCAAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAGCCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCGCGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGA]

[+] EMBL CD192878             [ATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGTTAGCATGAATCTCACTAACTTTATTCGTTCAAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAGCCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCGCGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGA]


>consensus_9992#1 ATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGT TAGCATGAATCTCACTAACTTTATTCGTTCAAGGACGATCCTTTTGAGTGTCATTTCCTT ATTGAATGAGCCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAA GTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAA AGCTACTCGCGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATA CTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACT ATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTC AACTGA



consensusID : consensus_9992#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence
                              [TTTGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGTAAGTTACTCTTTTTTACGTATATTTTTAGGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC]

[+] EMBL CD190254             [TTTGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGTAAGTTACTCTTTTTTACGTATATTTTTAGGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC]


>consensus_9992#2 TTTGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTT AAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTG ATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATG ACTTTGTATGAAGGAGGTTATTTCAAAGTAAGTTACTCTTTTTTACGTATATTTTTAGGC ACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9992#0      TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAA 60
consensus_9992#1      ------------------------------------------------------------
consensus_9992#2      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGAT 120
consensus_9992#1      ------------------------------------------------------------
consensus_9992#2      ------------------------------------------------------------
                                                                                  

consensus_9992#0      GGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGAC 180
consensus_9992#1      ------------------------------------------------------------
consensus_9992#2      ------------------------------------------------------------
                                                                                  

consensus_9992#0      TTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAG 240
consensus_9992#1      ------------------------------------------------------------
consensus_9992#2      ------------------------------------------------------------
                                                                                  

consensus_9992#0      TCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGA 300
consensus_9992#1      ------------------------------------------------------------
consensus_9992#2      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATC 360
consensus_9992#1      --------------------------------ATGACCCTCAGAGCGGTGAGCTGCCATC 28
consensus_9992#2      ------------------------------------------------------------
                                                                                  

consensus_9992#0      TGAGAGATGGAATCCGACGCAAAATGTCAGG----------------------------- 391
consensus_9992#1      TGAGAGATGGAATCCGACGCAAAATGTCAGGTTAGCATGAATCTCACTAACTTTATTCGT 88
consensus_9992#2      ------------------------------------------------------------
                                                                                  

consensus_9992#0      ------ACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCA-AACATCCATTCAGC 444
consensus_9992#1      TCAAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAGCCA-AACATCCATTCAGC 147
consensus_9992#2      --------------TTTGAATTCGA---GCGTAGCTGATGGCCGATGGCATCTCGTAAAC 43
                                    ***** *   *    * **    ***  * *   ****   * * *

consensus_9992#0      TGCACA-TGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGG 503
consensus_9992#1      TGCACA-TGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGG 206
consensus_9992#2      CTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAG 103
                         **  *   * **    **      * * * *    ** ** *  ****   * *  *

consensus_9992#0      ATGAGTA--CGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACA 561
consensus_9992#1      ATGAGTA--CGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCGCGAGGAGGCTAAACA 264
consensus_9992#2      TGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCA 163
                        ***      ** ***  * *   * *       ** **  **    **    *   **

consensus_9992#0      AGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTC 621
consensus_9992#1      AGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTC 324
consensus_9992#2      TATTTGGACCACCAAT--GACTTTGTATGAAGGAGGTTATTTCAA-AGTAAGTTACTCTT 220
                         * *   ***   *   **      *** * *   * * * *   ***      * * 

consensus_9992#0      TAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGA 681
consensus_9992#1      TAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGA 384
consensus_9992#2      T-------TTTACGTATATTTTTAGGCA---CGATTATGCTTCCCTGACGATTATC-CAT 269
                      *       ****   ** *  * * * *    ** ***       *** *** **  *  

consensus_9992#0      ATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGA 741
consensus_9992#1      ATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGA------------------ 426
consensus_9992#2      ATAGTCCTCCTACAATGC------------------------------------------ 287
                      *** *    **   ***                                           

consensus_9992#0      AATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCC 801
consensus_9992#1      ------------------------------------------------------------
consensus_9992#2      ------------------------------------------------------------
                                                                                  

consensus_9992#0      ATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTC 861
consensus_9992#1      ------------------------------------------------------------
consensus_9992#2      ------------------------------------------------------------
                                                                                  

consensus_9992#0      AAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTATCCGTCTTGTCTTTGAGCGCGG 921
consensus_9992#1      ------------------------------------------------------------
consensus_9992#2      ------------------------------------------------------------
                                                                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)