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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1198 fasta sequence
[TGTTATATCAAGAATATAAGTTAGAAGTGATATAGACATTTTAAATATACAATTAAAGTATGAACCAATTAGACGATTTAAAAAATAACTAAAATATTGATAAGTAATAATCTTGTTTAAATAAAAACATTTTCTCATTTGAATTGAAGGTAGTAACAAACGTTTAAATAACAAAAAGGCAAAACAAAATAGACTAGTAATGGCAAATACTTATGCATATAATCACAAGCTTTTACAAATCAAGAAATGCTGACTCAAAGATTAAATAGGAATGCAGTGCATTTGCACAAGGAGAATGATAGCTTACAACTGATAGGTATCTGACATCTAAGAGTTTATACAGAATATTTGGGAGGTGGGTCTTCTGTAAGTCTGACCGTAGGTGGGTCCCCAACTATGAGAACAGGTTGGATGAATCGGTCACCAAAAGAAATAGGAGCAGAAGCGACAGACCTAGACAGGTGGCACTGCATTCTAGAATGTCCAGATGTGCTAGTAATTCTGAGATTAGATTGGTGTGGTGTATTCCGACATAAAAGTCGTGACAAACGCGAACGTATAGATGAATGAAAACGAGGACGAGATATTCCAGCTGAACGTCTCCTATAGCGACGAGATGGGTTCGACTGAAACGTCATACGTTGGTTCCGCTGAATGCGGGTAACAGTTGCACCCAAACCAGATCTCCTTTGTGACTCATTGTAACTAGGAGGAAAGGGAGGAAATATCATAGGTGGTTCTTCATGTGTAGGTGAAAGTATCACATAAACAATCGTAGTGGAAGATGAAAATGGAGGTGGATTAGATGAAGAATCAGAGGCATTGGAAACATTTGTAGGGACTTGGAGAGTTGTATACAGAAGACGAGGACGAGGTTCACTAGGACGAATAAGACGCAATCTTTTAAAACGACGAAATATAGATCTACTTAAGGTACCTGGTTGTTGAACAGAGGACTGTTCATTGCTGGAAGAGCAGGAAACTGAAGTTCGATCTTGAGTTTCGAATCTCTCTGCATCGAATAGGTTAGCAGCTGCACGAGCGGCAGACAAAGCTACTGTACCAGTACCTGCTTGTGTGAGGATTAATGAATGACGATTCAACTCAGATAAAAAAGGGATTAATGTATGGTGGATTTGTGGCTTATGAACTACTTCATTAGCACTACTGGTGGGATAATTTCGTATAGGTACATCTG]
[+] EMBL CD076297 [TGTTATATCAAGAATATAAGTTAGAAGTGATATAGACATTTTAAATATACAATTAAAGTATGAACCAATTAGACGATTTAAAAAATAACTAAAATATTGATAAGTAATAATCTTGTTTAAATAAAAACATTTTCTCATTTGAATTGAAGGTAGTAACAAACGTTTAAATAACAAAAAGGCAAAACAAAATAGACTAGTAATGGCAAATACTTATGCATATAATCACAAGCTTTTACAAATCAAGAAATGCTGACTCAAAGATTAAATAGGAATGCAGTGCATTTGCACAAGGAGAATGATAGCTTACAACTGATAGGTATCTGACATCTAAGAGTTTATACAGAATATTTGGGAGGTGGGTCTTCTGTAAGTCTGACCGTAGGTGGGTCCCCAACTATGAGAACAGGTTGGATGAATCGGTCACCAAAAGAAATAGGAGCAGAAGCGACAGACCTAGACAGGTGGCACTGCATTCTAGAATGTCCAGATGTGCTAGTA ]
[+] EMBL CD127296 [ tgcaatagtAGGTGGGTCTTCTGTATTTCTGACCGTAGGTGGGTCCCCAACTATGAGAACAGGTTGGATGAATCGGTCACCAAAAGAAATAGGAGCAGAAGCGACAGACCTAGACAGGTGGCACTGCATTCTAGAATGTCCAGATGTGCTAGTGATTCTGAGATTAGATTGGTGTGGTGTATTCCGACATAAAAGTCGTGACAAACGCGAACGTATAGATGAATGAAAACGAGGACGAGATATTCCAGCTGAACGTCTCCTATAGCGACGAGATGGGTTCGACTGAAACGTCATACGTTGGTTCCGCTGAATGCGGGTAACAGTTGCACCCAAACCAGATCTCCTTTGTGACTCATTGTAACTAGGAGGAAAGGGAGGAAATATCATAGGTGGTTCTTCATGTGTAGGTGAAAGTATCACATAAACAATCGTAGTGGAAGATGAAAATGGAGGTGGATTANATGAAGAATCAGAGGCATTGGAAACATTTGTAGGGACTTGGAGAGTTGTATACAGAAGACGAGGACGAGGTTCACTATGACGAATAAGACGCAATCTTTTAAAACGACGAAATATAGATC ]
[+] EMBL CD155810 [ CAGACCTAGACAGGTGGCACTGCATTCTAGAATGTCCAGATGTGCTAGTAATTCTGAGATTAGATTGGTGTGGTGTATTCCGACATAAAAGTCGTGACAAACGCGAACGTATAGATGAATGAAAACGAGGACGAGATATTCC ]
[+] EMBL CD093494 [ GAATGTCCAGATGTGCTAGTAATTCTGAGATTAGATTGGTGTGGTGTATTCCGACATAAAAGTCGTGACAAACGCGAACGTATAGATGAATGAAAACGAGGACGAGATATTCCAGCTGAACGTCTCCTATAGCGACGAGATGGGTTCGACTGAAACGTCATACGTTGGTTCCGCTGAATGCGGGTAACAGTTGCACCCAAACCAGATCTCCTTTGTGACTCATTGTAACTAGGAGGAAAGGGAGGAAATATCATAGGTGGTTCTTCATGTGTAGGTGAAAGTATCACATAAACAATCGTAGTGGAAGATGAAAATGGAGGTGGATTAGATGACGAA ]
[-] EMBL CD167885 [ ATTCTGAGATTAGATTGGTGTGGTGTATTCCGACATAAAAGTCGTGACAAACGCGAACGTATAGATGAATGAAAACGAGGACGAGATATTCCAGCTGAACGTCTCCTATAGCGACGAGATGGGTTCGACTGAAACGTCATACGTTGGTTCCGCTGAATGCGGGTAACAGTTGCACCCAAACCAGATCTCCTTTGTGACTCATTGTAACTAGGAGGAAAGGGAGGAAATATCATAGGTGGTTCTTCATGTGTAGGTGAAGGTATCACATAAACAATCGTAGTGGAAGATGAAAATGGAGGTGGATTGGATGAAGAATCAGAGGCA TGGAAACATTTGTGGGGACTTGGAGAGGGGTAccg ]
[-] EMBL CD169336 [ AGCTGAACGTCTCCTATAGCGACGAGATGGGTTCGACTGAAACGTCATACGTTGGTTCCGCTGAATGCGGGTAACAGTTGCACCCAAACCAGATCTCCTTTGTGACTCATTGTAACTAGGAGGAAAGGGAGGAAATATCATAGGTGGTTCTTCATGTGTAGGTGAAAGTATCACATAAACAATCGTAGTGGAAGATGAAAATGGAGGTGGATTAGATGAAGAATCAGAGGCATTGGAAACATTTGTAGGGACTTGGAGAGTTGTATACAGAAGACGAGGACGAGGTTCACTAGGACGAATAAGACGCAATCTTTTAAAACGACGAAATATAGATCTACTTAAGGTACCTGGTTGTTGAACAGAGGACTGTTCATTGCTGGAAGAGCAGGAAACTGAAGTTCGATCTTGAGTTTCGAATCTCTCTGCATCGAATAGGTTAGCAGCTGCACGAGCGGCAGACAAAGCTACTGTACCAGTACCT ]
[+] EMBL CD200034 [ AGGAAATATCATAGGTGGTTCTTCATGTGTAGGTGAAAGTATCACATAAACAATCGTAGTGGAAGATGAAAATGGAGGTGGATTAGATGAAGAATCGGAGGCATTGGAAACATTTGTAGGGACTTGGAGAGTTGTATACAGAAGACGAGGACGAGGTTCACTAGGACGAATAAGACGCAATCTTTTAAAACGACGAAATATAGATCT ]
[-] EMBL CD111517 [ GGAAATATCATAGGTGGTTCTTCATGTGTAGGTGAAAGTATCACATAAACAATCGTAGTGGAAGATGAAAATGGAGGTGGATTAGATGAAGAATCAGAGGCATTGGAAACATTTGTAGGGACTTGGAGAGTTGTATACAGAAGACGAGGACGAGGTTCACTAGGACGAATAAGACGCAATCTTTTAAAACGACGAAATATAGATCTACTTAAGGTACCTGGTTGTTGAACAGAGGACTGTTCATTGCTGGAAGAGCAGGAAACTGAAGTTCGATCTTGAGTTTCGAATCTCTCTGCATCGAATAGGTTAGCAGCTGCACGAGCGGCAGACAAAGCTACT ]
[-] EMBL CD111160 [ GGAAATATCATAGGTGGTTCTTCATGTGTAGGTGAAAGTATCACATAAACAATCGTAGTGGAAGATGAAAATGGAGGTGGATTAGATGAAGAATCAGAGGCATTGGAAACATTTGTAGGGACTTGGAGAGTTGTATACAGAAGACGAGGACGAGGTTCACTAGGACGAATAAGACGCAATCTTTTAAAACGACGAAATATAGATCTA ]
[-] EMBL CD194872 [ GGAAACATTTGTAGGGACTTGGAGAGTTGTATACAGAAGACGAGGACGAGGTTCACTAGGACGAATAAGACGCAATCTTTTAAAACGACGAAATATAGATCTACTTAAGGTACCTGGTTGTTGAACAGAGGACTGTTCATTGCTGGAAGAGCAGGAAACTGAAGTTCGATCTTGAG ]
[-] EMBL CD167113 [ TGAAGTTCGATCTTGAGTTTCGAATCTCTCTGCATCGAATAGGTTAGCAGCTGCACGAGCGGCAGACAAAGCTACTGTACCAGTACCTGCTTGTGTGAGGATTAATGAATGACGATTCAACTCAGATAAAAAAGGGATTAATGTATGGTGGATTTGTGGCTTATGAACTACTTCATTAGCACTACTGGTGGGATAATTTCGTATAGGTACATCTG]
consensusID : consensus_9994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[GTTATATCAAGAATATAAGTTAGAAGTGATATAGACATTTTAAATATACAATTAAAGTATGAACCAATTAGACGATTTAAAAAATAACTAAAATATTGATAAGTAATAATCTTGTTTAAATAAAAACATTTTCTCATTTGAATTGAAGGTAGTAACAAACGTTTAAATAACAAAAAGGCAAAACAAAATAGACTAGTAATGGCAAATACTTATGCATATAATCACAAGCTTTTACAAATCAAGAAATGCTGACTCAAAGATTAAATAGGAATGCAGTGCATTTGCACAAGGAGAATGATAGCTTACAACTGATAGGTATCTGACATCTAAGAGTTTATACAGAATATTTGGGAGGTGGGTCTTCTGTAAGTCTGACCGTAGGTGGGTCCCCAACTATGAGAACAGGTTGGATGAATCGGTCACCAAAAGAAATAGGAGCAGAAGCGACAGACCTAGACAGGTGGCACTGCATTCTAGAATGTCCAGATGTGCTAGTAATTCTGAGATTAGATTGGTGTGGTGTATTCCGACATNAAAAGCCCTCGTGCCGAATNTTGGCTCGGA]
[-] EMBL CD082707 [GTTATATCAAGAATATAAGTTAGAAGTGATATAGACATTTTAAATATACAATTAAAGTATGAACCAATTAGACGATTTAAAAAATAACTAAAATATTGATAAGTAATAATCTTGTTTAAATAAAAACATTTTCTCATTTGAATTGAAGGTAGTAACAAACGTTTAAATAACAAAAAGGCAAAACAAAATAGACTAGTAATGGCAAATACTTATGCATATAATCACAAGCTTTTACAAATCAAGAAATGCTGACTCAAAGATTAAATAGGAATGCAGTGCATTTGCACAAGGAGAATGATAGCTTACAACTGATAGGTATCTGACATCTAAGAGTTTATACAGAATATTTGGGAGGTGGGTCTTCTGTAAGTCTGACCGTAGGTGGGTCCCCAACTATGAGAACAGGTTGGATGAATCGGTCACCAAAAGAAATAGGAGCAGAAGCGACAGACCTAGACAGGTGGCACTGCATTCTAGAATGTCCAGATGTGCTAGTAATTCTGAGATTAGATTGGTGTGGTGTATTCCGACATNAAAAGCCCTCGTGCCGAATNTTGGCTCGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9994#0 TGTTATATCAAGAATATAAGTTAGAAGTGATATAGACATTTTAAATATACAATTAAAGTA 60
consensus_9994#1 -GTTATATCAAGAATATAAGTTAGAAGTGATATAGACATTTTAAATATACAATTAAAGTA 59
***********************************************************
consensus_9994#0 TGAACCAATTAGACGATTTAAAAAATAACTAAAATATTGATAAGTAATAATCTTGTTTAA 120
consensus_9994#1 TGAACCAATTAGACGATTTAAAAAATAACTAAAATATTGATAAGTAATAATCTTGTTTAA 119
************************************************************
consensus_9994#0 ATAAAAACATTTTCTCATTTGAATTGAAGGTAGTAACAAACGTTTAAATAACAAAAAGGC 180
consensus_9994#1 ATAAAAACATTTTCTCATTTGAATTGAAGGTAGTAACAAACGTTTAAATAACAAAAAGGC 179
************************************************************
consensus_9994#0 AAAACAAAATAGACTAGTAATGGCAAATACTTATGCATATAATCACAAGCTTTTACAAAT 240
consensus_9994#1 AAAACAAAATAGACTAGTAATGGCAAATACTTATGCATATAATCACAAGCTTTTACAAAT 239
************************************************************
consensus_9994#0 CAAGAAATGCTGACTCAAAGATTAAATAGGAATGCAGTGCATTTGCACAAGGAGAATGAT 300
consensus_9994#1 CAAGAAATGCTGACTCAAAGATTAAATAGGAATGCAGTGCATTTGCACAAGGAGAATGAT 299
************************************************************
consensus_9994#0 AGCTTACAACTGATAGGTATCTGACATCTAAGAGTTTATACAGAATATTTGGGAGGTGGG 360
consensus_9994#1 AGCTTACAACTGATAGGTATCTGACATCTAAGAGTTTATACAGAATATTTGGGAGGTGGG 359
************************************************************
consensus_9994#0 TCTTCTGTAAGTCTGACCGTAGGTGGGTCCCCAACTATGAGAACAGGTTGGATGAATCGG 420
consensus_9994#1 TCTTCTGTAAGTCTGACCGTAGGTGGGTCCCCAACTATGAGAACAGGTTGGATGAATCGG 419
************************************************************
consensus_9994#0 TCACCAAAAGAAATAGGAGCAGAAGCGACAGACCTAGACAGGTGGCACTGCATTCTAGAA 480
consensus_9994#1 TCACCAAAAGAAATAGGAGCAGAAGCGACAGACCTAGACAGGTGGCACTGCATTCTAGAA 479
************************************************************
consensus_9994#0 TGTCCAGATGTGCTAGTAATTCTGAGATTAGATTGGTGTGGTGTATTCCGACATAAAAG- 539
consensus_9994#1 TGTCCAGATGTGCTAGTAATTCTGAGATTAGATTGGTGTGGTGTATTCCGACATNAAAAG 539
****************************************************** ***
consensus_9994#0 ---TCGTGACAAACGCGAACGTATAGATGAATGAAAACGAGGACGAGATATTCCAGCTGA 596
consensus_9994#1 CCCTCGTGCCGAATNTTGGCTCGGA----------------------------------- 564
***** * ** * *
consensus_9994#0 ACGTCTCCTATAGCGACGAGATGGGTTCGACTGAAACGTCATACGTTGGTTCCGCTGAAT 656
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 GCGGGTAACAGTTGCACCCAAACCAGATCTCCTTTGTGACTCATTGTAACTAGGAGGAAA 716
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 GGGAGGAAATATCATAGGTGGTTCTTCATGTGTAGGTGAAAGTATCACATAAACAATCGT 776
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 AGTGGAAGATGAAAATGGAGGTGGATTAGATGAAGAATCAGAGGCATTGGAAACATTTGT 836
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 AGGGACTTGGAGAGTTGTATACAGAAGACGAGGACGAGGTTCACTAGGACGAATAAGACG 896
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 CAATCTTTTAAAACGACGAAATATAGATCTACTTAAGGTACCTGGTTGTTGAACAGAGGA 956
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 CTGTTCATTGCTGGAAGAGCAGGAAACTGAAGTTCGATCTTGAGTTTCGAATCTCTCTGC 1016
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 ATCGAATAGGTTAGCAGCTGCACGAGCGGCAGACAAAGCTACTGTACCAGTACCTGCTTG 1076
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 TGTGAGGATTAATGAATGACGATTCAACTCAGATAAAAAAGGGATTAATGTATGGTGGAT 1136
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 TTGTGGCTTATGAACTACTTCATTAGCACTACTGGTGGGATAATTTCGTATAGGTACATC 1196
consensus_9994#1 ------------------------------------------------------------
consensus_9994#0 TG 1198
consensus_9994#1 --
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||