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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[GAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCGGACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACATCGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTCGGGCCGGGTGATTCTAGACCTTTTCGGTGATATTCGGTTGAATTCCCTGAAGCTCCACGCCGAAGGGTTTGCTAAAGTCCATTGGACGGAAACCCGGTCTGCCGGCTCCAGCACCGCATACACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGCAGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAATTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACACGGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCCGCGGGCCACCGTCAAGAAGATCAAGAAGGAGTTTACGGTCATCGAGCCCATCGACATCAACACACCAGCCTTACTGGCGCCACAGGCTGGAACAAAGGACAAGATGGCACGGGCGTGGTACAGAAACTTCGGGCAGGTGTCCGTGACAGCG]
[+] EMBL BU804602 [GAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCGGACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACATCGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTCGGGCCGGGTGATTCTAGACCTTTTCGGTGATATTCGGTTGAATTCCCTGAAGCTCCACGCCGAAGGGTTTGCTAAAGTCCATTGGACGGAAACCCGGTCTGCCGGCTCCAGCACCGCATACACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGCAGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAATTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACACGGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCCGCGGGCCACCGTCAAGAAGATCAAGAAGGAGTTTACGGTCATCGAGCCCATCGACATCAACACACCAGCCTTACTGGCGCCACAGGCTGGAACAAAGGACAAGATGGCACGGGCGTGGTACAGAAACTTCGGGCAGGTGTCCGTGACAGCG]
consensusID : consensus_1049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[GTGAGCTCAGACACCAGGAAACTGAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCGCACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACATCGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTCGGGCCGGGTGATTCTAGACCTTTTCGGTGAGATTCGGTTGAATTCCCTGAAGCTCCACGCCGAAGGGTTTGCTAAAGTCCATTGGACGGAATCCCGGTCTGCCGGCTCCAGCACCGCATACACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGCAGGTCAGTCCGCTCTGCAGGCACGCTGATGGGGGAGACTCCGGTAGACTTGAAGGGGATCAAAAACAACAAAACCAGCGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAATTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACACGGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCC]
[+] EMBL BU804718 [GTGAGCTCAGACACCAGGAAACTGAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCGCACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACATCGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTCGGGCCGGGTGATTCTAGACCTTTTCGGTGAGATTCGGTTGAATTCCCTGAAGCTCCACGCCGAAGGGTTTGCTAAAGTCCATTGGACGGAATCCCGGTCTGCCGGCTCCAGCACCGCATACACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGCAGGTCAGTCCGCTCTGCAGGCACGCTGATGGGGGAGACTCCGGTAGACTTGAAGGGGATCAAAAACAACAAAACCAGCGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAATTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACACGGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1049#0 -----------------------GAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCG 37
consensus_1049#1 GTGAGCTCAGACACCAGGAAACTGAAAAATAACCCCAGTCTTCCACAAGAAGATACCTCG 60
*************************************
consensus_1049#0 GACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACAT 97
consensus_1049#1 CACCTTTAAAACCACTCCACAGACGACCATGATCTTCGACAAGTTAAAAAAGTTAGACAT 120
***********************************************************
consensus_1049#0 CGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTC 157
consensus_1049#1 CGTCTTTGACTCCCCGGAGGTCGACTGTCCTCCGGTGTTCAGCAGCGGGGATGTTGTTTC 180
************************************************************
consensus_1049#0 GGGCCGGGTGATTCTAGACCTTTTCGGTGATATTCGGTTGAATTCCCTGAAGCTCCACGC 217
consensus_1049#1 GGGCCGGGTGATTCTAGACCTTTTCGGTGAGATTCGGTTGAATTCCCTGAAGCTCCACGC 240
****************************** *****************************
consensus_1049#0 CGAAGGGTTTGCTAAAGTCCATTGGACGGAAACCCGGTCTGCCGGCTCCAGCACCGCATA 277
consensus_1049#1 CGAAGGGTTTGCTAAAGTCCATTGGACGGAATCCCGGTCTGCCGGCTCCAGCACCGCATA 300
******************************* ****************************
consensus_1049#0 CACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGC 337
consensus_1049#1 CACCCAGAACTACAGCGACGAAGTGGAGTACCTGAACCGGAGGGAGGTGCTGCTTCAGGC 360
************************************************************
consensus_1049#0 AG---------------------------------------------------------- 339
consensus_1049#1 AGGTCAGTCCGCTCTGCAGGCACGCTGATGGGGGAGACTCCGGTAGACTTGAAGGGGATC 420
**
consensus_1049#0 -------------------ATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAA 380
consensus_1049#1 AAAAACAACAAAACCAGCGATAACGGCGAGGTGACGGTCCTCCCAGAGGGTAGACACGAA 480
*****************************************
consensus_1049#0 TTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACAC 440
consensus_1049#1 TTTCCATTCAGCTTCCAGCTCCCAGAGGAGACGCTGGTCACCTCCTTTGAGGGGAAACAC 540
************************************************************
consensus_1049#0 GGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCCGCGGGCCACCGTCAAGAAG 500
consensus_1049#1 GGCAGCATCCGTTACTGGGTCAAAGTGAAGCTACACAGGCC------------------- 581
*****************************************
consensus_1049#0 ATCAAGAAGGAGTTTACGGTCATCGAGCCCATCGACATCAACACACCAGCCTTACTGGCG 560
consensus_1049#1 ------------------------------------------------------------
consensus_1049#0 CCACAGGCTGGAACAAAGGACAAGATGGCACGGGCGTGGTACAGAAACTTCGGGCAGGTG 620
consensus_1049#1 ------------------------------------------------------------
consensus_1049#0 TCCGTGACAGCG 632
consensus_1049#1 ------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |