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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[GCGCCCTGAGCAGCAGTCCGCAGGAGACCCCCACTTAGAGCCAGCGCACAACATCAGCATAAACTTCTCACCTGGCGCTCGACATACCAAAACTACCAGAGCCATAAATGGAGGAGTGAGCTCTTGTGACAAGAGGTGGGAGGGGCTTCAAATCAACCCATACCACTCTACTTTTCCTGAGGCGATCTTTCTCCCAAACAGTCAGCAGCTTGTCTAAGGAGAGGACAGTGGAAAAAACTCTATGTGGTCCCCTACTGTCCATAAAAGCTTTGAGAATCGATCACAAACTACTATGGTGCAGATGCACTCATGGCTCTTGCTTATAGTGCTGTGACCCAGTTGGGCCTATTTTCTCAGCAGTATCCACCACCTCTGCTGCCTAAACCTAGAAAAGACAATATGAGACTTCAGAAACTCCTCAAGAGAAATGCCAAGAAAAAAACCTCTGCTCAGGGATCACAGACTGCTACATATTTCCGCTCAAGCCTTTCACCTGTGGATGAAGCGAGCCCTGATCTTGAGCACAGTGACCGCTCCACT]
[+] EMBL BU805338 [GCGCCCTGAGCAGCAGTCCGCAGGAGACCCCCACTTAGAGCCAGCGCACAACATCAGCATAAACTTCTCACCTGGCGCTCGACATACCAAAACTACCAGAGCCATAAATGGAGGAGTGAGCTCTTGTGACAAGAGGTGGGAGGGGCTTCAAATCAACCCATACCACTCTACTTTTCCTGAGGCGATCTTTCTCCCAAACAGTCAGCAGCTTGTCTAAGGAGAGGACAGTGGAAAAAACTCTATGTGGTCCCCTACTGTCCATAAAAGCTTTGAGAATCGATCACAAACTACTATGGTGCAGATGCACTCATGGCTCTTGCTTATAGTGCTGTGACCCAGTTGGGCCTATTTTCTCAGCAGTATCCACCACCTCTGCTGCCTAAACCTAGAAAAGACAATATGAGACTTCAGAAACTCCTCAAGAGAAATGCCAAGAAAAAAACCTCTGCTCAGGGATCACAGACTGCTACATATTTCCGCTCAAGCCTTTCACCTGTGGATGAAGCGAGCCCTGATCTTGAGCACAGTGACCGCTCCACT]
consensusID : consensus_1096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[CGCACACCCCCACTTAGAGCCAGCGCACAACATCAGCATAAACTTCTCACCTGGGTGCAGATGCACTCATGGCTCTTGCTTATAGTGCTGTGACCCAGTTGGGCCTATTTTCTCAGCAGTATCCACCACCTCTGCTGCCTAAACCTAGAAAAGACAATATGAGACTTCAGAAACTCCTCAAGAGAAATGCCAAGAAAAAAACCTCTGCTCAGGGATCACAGACTGCTACATATTTCCGCTCAAGCCTTTCACCTGTGGATGAAGCGAGCCCTGATCTTGAGCACAGTGACCGCTCCACTCCTCCTAAAACTCCAGAGACACAATTCAGGCTGGATAACCCCCACCAACCACCGCGGATCACTGTAAGACCACTATACCAACATGTGGGCTCACCTTACCCACACCGTGCCAATTATGAGAAAACAAATATATTCTCACTTCAGACTATGGT]
[+] EMBL BU804951 [CGCACACCCCCACTTAGAGCCAGCGCACAACATCAGCATAAACTTCTCACCTGGGTGCAGATGCACTCATGGCTCTTGCTTATAGTGCTGTGACCCAGTTGGGCCTATTTTCTCAGCAGTATCCACCACCTCTGCTGCCTAAACCTAGAAAAGACAATATGAGACTTCAGAAACTCCTCAAGAGAAATGCCAAGAAAAAAACCTCTGCTCAGGGATCACAGACTGCTACATATTTCCGCTCAAGCCTTTCACCTGTGGATGAAGCGAGCCCTGATCTTGAGCACAGTGACCGCTCCACTCCTCCTAAAACTCCAGAGACACAATTCAGGCTGGATAACCCCCACCAACCACCGCGGATCACTGTAAGACCACTATACCAACATGTGGGCTCACCTTACCCACACCGTGCCAATTATGAGAAAACAAATATATTCTCACTTCAGACTATGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1096#0 GCGCCCTGAGCAGCAGTCCGCAGGAGACCCCCACTTAGAGCCAGCGCACAACATCAGCAT 60
consensus_1096#1 ------------------------------------------------------------
consensus_1096#0 AAACTTCTCACCTGGCGCTCGACATACCAAAACTACCAGAGCCATAAATGGAGGAGTGAG 120
consensus_1096#1 ------------------------------------------------------------
consensus_1096#0 CTCTTGTGACAAGAGGTGGGAGGGGCTTCAAATCAACCCATACCACTCTACTTTTCCTGA 180
consensus_1096#1 ------------------------------------------------------------
consensus_1096#0 GGCGATCTTTCTCCCAAACAGTCAGCAGCTTGTCTAAGGAGAGGACAGTGGAAAAAACTC 240
consensus_1096#1 ----------------------------------------------------------CG 2
consensus_1096#0 TATGTGGTCCCCTACTGTCCATAAAAGCTTTGAGAATCGATCACAAACTACTATGGTGCA 300
consensus_1096#1 CACACCCCCACTTAGAGCCAGCGCACAACATCAGCATAAACTTC---TCACCTGGGTGCA 59
* * * ** * * * * ** ** * * ** ******
consensus_1096#0 GATGCACTCATGGCTCTTGCTTATAGTGCTGTGACCCAGTTGGGCCTATTTTCTCAGCAG 360
consensus_1096#1 GATGCACTCATGGCTCTTGCTTATAGTGCTGTGACCCAGTTGGGCCTATTTTCTCAGCAG 119
************************************************************
consensus_1096#0 TATCCACCACCTCTGCTGCCTAAACCTAGAAAAGACAATATGAGACTTCAGAAACTCCTC 420
consensus_1096#1 TATCCACCACCTCTGCTGCCTAAACCTAGAAAAGACAATATGAGACTTCAGAAACTCCTC 179
************************************************************
consensus_1096#0 AAGAGAAATGCCAAGAAAAAAACCTCTGCTCAGGGATCACAGACTGCTACATATTTCCGC 480
consensus_1096#1 AAGAGAAATGCCAAGAAAAAAACCTCTGCTCAGGGATCACAGACTGCTACATATTTCCGC 239
************************************************************
consensus_1096#0 TCAAGCCTTTCACCTGTGGATGAAGCGAGCCCTGATCTTGAGCACAGTGACCGCTCCACT 540
consensus_1096#1 TCAAGCCTTTCACCTGTGGATGAAGCGAGCCCTGATCTTGAGCACAGTGACCGCTCCACT 299
************************************************************
consensus_1096#0 ------------------------------------------------------------
consensus_1096#1 CCTCCTAAAACTCCAGAGACACAATTCAGGCTGGATAACCCCCACCAACCACCGCGGATC 359
consensus_1096#0 ------------------------------------------------------------
consensus_1096#1 ACTGTAAGACCACTATACCAACATGTGGGCTCACCTTACCCACACCGTGCCAATTATGAG 419
consensus_1096#0 --------------------------------
consensus_1096#1 AAAACAAATATATTCTCACTTCAGACTATGGT 451
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |