These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [ATCCACCGGGAAAACGATTTTTTTTCCTAATTGATTTTCCGAAATAGGAGATTAAAAAAAAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAGCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGGNNAACATCTACCCATATATGTGGACGGCGGGAGGGTGGCGCGAGAGGAAGGAACTCGAGGACGAAGACAAGACCAGAGAGGCCCGATAGAGAGGAGAAAAAAAGGAAGAGAGAACAAATGAAAAAAGGAAAAAAAGAAGGAAGAAGAGGAGAGGAGCGGGAGAAGCGAGGGGAAGGGGAAAATAGAGGGGAGAAAGAGAAACAAGAGAGGAGAAAGCCAGAAAAAACGGCCGAAAAGAGGGAAAGGAGGAGAAAAGGAAACAAAGAGGAAGGCGCAGGAGAAGAGGAGGAAAGAGAAAAAGAAGCAACAAAGGAGGGAGGGAAGGAGAAGAAGAAAAGAAAAAAAAGAAGGGGAGAGAGAGAAGAGCGCGAAGGGGGGAGGAGACAGAACAAGGAA] [+] EMBL CA329316 [ATCCACCGGGAAAACGATTTTTTTTCCTAATTGATTTTCCGAAATAGGAGATTAAAAAAAAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAGCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGGNNAACATCTACCCATATATGTGGACGGCGGGAGGGTGGCGCGAGAGGAAGGAACTCGAGGACGAAGACAAGACCAGAGAGGCCCGATAGAGAGGAGAAAAAAAGGAAGAGAGAACAAATGAAAAAAGGAAAAAAAGAAGGAAGAAGAGGAGAGGAGCGGGAGAAGCGAGGGGAAGGGGAAAATAGAGGGGAGAAAGAGAAACAAGAGAGGAGAAAGCCAGAAAAAACGGCCGAAAAGAGGGAAAGGAGGAGAAAAGGAAACAAAGAGGAAGGCGCAGGAGAAGAGGAGGAAAGAGAAAAAGAAGCAACAAAGGAGGGAGGGAAGGAGAAGAAGAAAAGAAAAAAAAGAAGGGGAGAGAGAGAAGAGCGCGAAGGGGGGAGGAGACAGAACAAGGAA] consensusID : consensus_110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [CGGGAAAACGATTTTTTTTTAATTGATTTTCCGAAATAGGAGATTAAAAAAAAAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAGCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGGACATCTTCACATTTATTTGGCCTGCGTGAGCGTTGCTCAGCATCAACGAGCTCACGGCCGTGTCAGCAGCTCCTGGGCCCACGTCTGGATGGCGGATGTTGCGTGTTGGAGCAGCTGCCACGTGGAGTTGGTGAAAGACAGCGCGTGGCCCTGCAGGCACGACACGGACACCTCGCCGTTGCAGGAGTCCTGTAGGCTGATCCACGCTCTGTGTAAAAGGGCGGAGAGGTACGCCAGGGCAGGCAGGATGTAGTTCTGATGGAGGAGCAGCAG] [+] EMBL CA329426 [CGGGAAAACGATTTTTTTTTAATTGATTTTCCGAAATAGGAGATTAAAAAAAAAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGAGCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGGACATCTTCACATTTATTTGGCCTGCGTGAGCGTTGCTCAGCATCAACGAGCTCACGGCCGTGTCAGCAGCTCCTGGGCCCACGTCTGGATGGCGGATGTTGCGTGTTGGAGCAGCTGCCACGTGGAGTTGGTGAAAGACAGCGCGTGGCCCTGCAGGCACGACACGGACACCTCGCCGTTGCAGGAGTCCTGTAGGCTGATCCACGCTCTGTGTAAAAGGGCGGAGAGGTACGCCAGGGCAGGCAGGATGTAGTTCTGATGGAGGAGCAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_110#0 ATCCACCGGGAAAACGATTTTTTTTCCTAATTGATTTTCCGAAATAGGAGATTAAAAAAA 60 consensus_110#1 ------CGGGAAAACGATTTTTTTT--TAATTGATTTTCCGAAATAGGAGATTAAAAAAA 52 ******************* ********************************* consensus_110#0 AAA-GTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGA 119 consensus_110#1 AAAAGTCTATTTTTGAGGGAGACTCACAGTGTCCAAGAGCAGCTGTGGAGGACAGCTGGA 112 *** ******************************************************** consensus_110#0 GCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 179 consensus_110#1 GCACTGAAAGGCAGCCACAGATGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGGA 172 ****************************************************** * * consensus_110#0 TGTGTGTGTGTGTGTGTG-TGTGTGTGTGTGNGGNN-AACATCTACCCATATATGTGGAC 237 consensus_110#1 CATCTTCACATTTATTTGGCCTGCGTGAGCGTTGCTCAGCATCAACGAGCTCACG----- 227 * * * * * ** ** *** * * * * **** ** * * consensus_110#0 GGCGGGAGGGTGGCGCGAGAGGAAGGAACTCGAGGACGAAGACAAGACCAGAGAGGCCCG 297 consensus_110#1 GCCGTGTCAGCAGCTCCTGGGCCCACGTCTGGATGGCGGATGTTGCGTGTTGGAGCAGCT 287 * ** * * ** * * * ** ** * ** * *** * consensus_110#0 ATAGAGAGGAGAAAAAAAGGAAGAGAGAACAAATGAAAAAAGGAAAAAAAGAAGGAAGAA 357 consensus_110#1 GCCACGTGGAGTTGGTGAAAGACAGCGCGTGGCCCTGCAGGCACGACACGGACACCTCGC 347 * **** * * ** * * * * ** consensus_110#0 GAGGAGAGGAGCGGGAGAAGCGAGGGGAAGGGGAAAATAGAGGGGAGAAAGAGAAACAAG 417 consensus_110#1 CGTTGCAGGAGTCCTGTAGGCTGATCCACGCTCTGTGTAAAAGGGCGGA-GAGGTACGCC 406 ***** * ** * * ** * *** * * *** ** consensus_110#0 AGAGGAGAAAGCCAGAAAAAACGGCCGAAAAGAGGGAAAGGAGGAGAAAAGGAAACAAAG 477 consensus_110#1 AGGGCAGGCAGGATGTAGTTCTGATGGAGGAGCAGCAG---------------------- 444 ** * ** ** * * * ** ** * * consensus_110#0 AGGAAGGCGCAGGAGAAGAGGAGGAAAGAGAAAAAGAAGCAACAAAGGAGGGAGGGAAGG 537 consensus_110#1 ------------------------------------------------------------ consensus_110#0 AGAAGAAGAAAAGAAAAAAAAGAAGGGGAGAGAGAGAAGAGCGCGAAGGGGGGAGGAGAC 597 consensus_110#1 ------------------------------------------------------------ consensus_110#0 AGAACAAGGAA 608 consensus_110#1 ----------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |