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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[CACCATACTGGTGCACGGGAAACAGGTGACTCTCGGCCTGTTTGGGCAGGAAGAGGAAGTGATCTCCAACCCGCTGTCGCCGGGGGTGATCCAGGGCATCATCTACAGCAAGTGCTCCGCTCCCGGCGCCGAGCGGGAGGCCGTTCTCCAGCAGGAGCTGGTCATCCACATCGGATGGATCATCTCCAATAACCCGGAGCTCTTCAGCGGCATGCTGAAGATCTGAGTCGGGTGGATCGTCCAGGCTATGAAACACGAGCTGAAAATCCGAGCTGGGGACATGCCCGCGCAGGACATCCACCAACTGTCTCCCAGCGACATCAAGCAGCTGCTGCTGGACGTCCTGCAGCCCCAACACACTGCCAGGTCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCTGGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGCTGAGACGCACCTCCCACAGCAACCGACGCTCTCTGACATGACCATGTATGAGATGAACTTCTCTCTGCTGGTGGAGGACACGCTGAAGAACATCGTCCTGCCCGAGTACAGAC]
[+] EMBL BU805195 [CACCATACTGGTGCACGGGAAACAGGTGACTCTCGGCCTGTTTGGGCAGGAAGAGGAAGTGATCTCCAACCCGCTGTCGCCGGGGGTGATCCAGGGCATCATCTACAGCAAGTGCTCCGCTCCCGGCGCCGAGCGGGAGGCCGTTCTCCAGCAGGAGCTGGTCATCCACATCGGATGGATCATCTCCAATAACCCGGAGCTCTTCAGCGGCATGCTGAAGATCTGAGTCGGGTGGATCGTCCAGGCTATGAAACACGAGCTGAAAATCCGAGCTGGGGACATGCCCGCGCAGGACATCCACCAACTGTCTCCCAGCGACATCAAGCAGCTGCTGCTGGACGTCCTGCAGCCCCAACACACTGCCAGGTCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCTGGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGCTGAGACGCACCTCCCACAGCAACCGACGCTCTCTGACATGACCATGTATGAGATGAACTTCTCTCTGCTGGTGGAGGACACGCTGAAGAACATCGTCCTGCCCGAGTACAGAC]
consensusID : consensus_1120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[TCCTTTTTTATCTTTAATTGTTTTATCTGCCGCGGGGTGTTTATATCGGAGCATATTATCTGCTTCTGCATCAGCCCATTTCCCCACTGAAATGATTAAAGCTTATCTAATCTCATCTGATCTAATAAGCATCGACTTAGACAATTCCCCGGAGCCCAGAAGCTGGCCACACATGATTTCCTCTCCTTAAAACGGAGGCCAATATTTTCCCTTTTTTAATGTTTCACCTCAGGGCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCTGGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGCTGAGACGCACCTCCCACAGGTAATTAGGACCTCCAGTCATGCTGCTTTCAGCACTGTCGGTT]
[+] EMBL FR0063575 [TCCTTTTTTATCTTTAATTGTTTTATCTGCCGCGGGGTGTTTATATCGGAGCATATTATCTGCTTCTGCATCAGCCCATTTCCCCACTGAAATGATTAAAGCTTATCTAATCTCATCTGATCTAATAAGCATCGACTTAGACAATTCCCCGGAGCCCAGAAGCTGGCCACACATGATTTCCTCTCCTTAAAACGGAGGCCAATATTTTCCCTTTTTTAATGTTTCACCTCAGGGCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCTGGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGCTGAGACGCACCTCCCACAGGTAATTAGGACCTCCAGTCATGCTGCTTTCAGCACTGTCGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1120#0 CACCATACTGGTGCACGGGAAACAGGTGACTCTCGGCCTGTTTGGGCAGGAAGAGGAAGT 60
consensus_1120#1 ------------------------------------------------------------
consensus_1120#0 GATCTCCAACCCGCTGTCGCCGGGGGTGATCCAGGGCATCATCTACAGCAAGTGCTCCGC 120
consensus_1120#1 -------------------------------------------------------TCCTT 5
***
consensus_1120#0 TCCCGGCGCCGAGCGGGAGGCCGTTCTCCAGCAGGAGCTGGTCAT-CCACATCGGATGGA 179
consensus_1120#1 TTTTATCTTTAATTG------TTTTATCTGCCGCGGGGTGTTTATATCGGAGCATATTAT 59
* * * * ** ** * * * ** * ** * * * **
consensus_1120#0 TCATCTC--CAATAACCCGGAGCTCTTCAGCGGCATGCTGAAGATCTGAGTCGGGTGGAT 237
consensus_1120#1 CTGCTTCTGCATCAGCCC--ATTTCCCCACTGAAATGATTAAAGCTTA--TCTAATC--T 113
** ** * *** * ** ** * *** * ** * ** * *
consensus_1120#0 CGTCCAGGCTATGAAACACGAGCTGAAAATCCGAGCTGGGGACATGCCCGCGCAGGACAT 297
consensus_1120#1 CATCTGATCTAATAAGCATCGACTTAGACAATTCCCCGGAG-------CCCAGAAGCTGG 166
* ** *** ** ** ** * * * ** * * * * *
consensus_1120#0 CCACCAACTGTCTCCCAGCGACATCAAGCAGCTGCTGCTGGACGTCCTGCAGCCCCAACA 357
consensus_1120#1 CCACACATGATTTCCT--CTCCTTAAAACGGAGGCCAATATTTTCCCTTTTTTAATGTTT 224
**** * * *** * * * ** * * ** * ***
consensus_1120#0 CACTGCCAGGTCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCT 417
consensus_1120#1 CACC-TCAGGGCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCT 283
*** **** *************************************************
consensus_1120#0 GGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGC 477
consensus_1120#1 GGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGC 343
************************************************************
consensus_1120#0 TGAGACGCACCTCCCACAG-CAACCGACGCTCTCTGACATGACCATGTATGAGATGAACT 536
consensus_1120#1 TGAGACGCACCTCCCACAGGTAATTAGGACCTCCAGTCATG-CTGCTTTCAGCACTGTCG 402
******************* ** * * * **** * * * *
consensus_1120#0 TCTCTCTGCTGGTGGAGGACACGCTGAAGAACATCGTCCTGCCCGAGTACAGAC 590
consensus_1120#1 GTT--------------------------------------------------- 405
*
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |