These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAATCTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAATTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA] [+] EMBL BU805220 [GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAATCTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAATTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA] consensusID : consensus_1123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGGTACAACAGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCGATTTTTGCTTTCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAACAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAGTTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCA] [-] EMBL CA589183 [CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGGTACAACAGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCGATTTTTGCTTTCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAACAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAGTTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1123#0 GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAAT 60 consensus_1123#1 ------------------------------------------------------------ consensus_1123#0 CTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCC 120 consensus_1123#1 -------------CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCC 47 *********************************************** consensus_1123#0 TTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATG 180 consensus_1123#1 TTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATG 107 ************************************************************ consensus_1123#0 GGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACG 240 consensus_1123#1 GGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACG 167 ************************************************************ consensus_1123#0 TTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTG 300 consensus_1123#1 TTTGCTTGTCTACATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTG 227 ************* ********************************************** consensus_1123#0 GTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGC 360 consensus_1123#1 GTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGC 287 ************************************************************ consensus_1123#0 TGCCAG------------------------------------------------------ 366 consensus_1123#1 TGCCAGGTACAACAGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCG 347 ****** consensus_1123#0 --------------AGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAAC 412 consensus_1123#1 ATTTTTGCTTTCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAAC 407 ********************************************** consensus_1123#0 CAACCTGAAGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCT 472 consensus_1123#1 CAACCTGAAACAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCT 467 ********* ************************************************** consensus_1123#0 CCGCGAATTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCA 532 consensus_1123#1 CCGCGAGTTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCA 527 ****** ***************************************************** consensus_1123#0 AGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA 592 consensus_1123#1 AGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCA------------------ 569 ****************************************** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |