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Takifugu rubripes
cluster # 1123 cluster # 1123       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1123#0 length = 592 sequences # 1  
consensus_1123#1 length = 569 sequences # 1  

consensusID : consensus_1123#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence
                              [GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAATCTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAATTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA]

[+] EMBL BU805220             [GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAATCTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAATTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA]


>consensus_1123#0 GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAAT CTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCC TTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATG GGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACG TTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTG GTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGC TGCCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGA AGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAAT TAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAG CCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA



consensusID : consensus_1123#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence
                              [CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGGTACAACAGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCGATTTTTGCTTTCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAACAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAGTTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCA]

[-] EMBL CA589183             [CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTACATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGGTACAACAGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCGATTTTTGCTTTCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAACAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAGTTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCA]


>consensus_1123#1 CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCCTTTTACTGGGCCT GGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATGGGAATACAGACTT TGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACGTTTGCTTGTCTAC ATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTGGTCCGACCCAAGA GCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGCTGCCAGGTACAAC AGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCGATTTTTGCTTTCA GAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAACCAACCTGAAACAG GCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCTCCGCGAGTTAGTT CAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCAAGCCGAAGCCATT AGTACCATCAACCGCTGGGCCCAGGATCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1123#0      GACTTTATGGCGTGTTTGCTGCGAAAGCTGACCTGGAACGTCTGATCAAAACTCAAAAAT 60
consensus_1123#1      ------------------------------------------------------------
                                                                                  

consensus_1123#0      CTGCTAAAGAGGTCGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCC 120
consensus_1123#1      -------------CGCTGTGAACATGACTCCTCTCCTGTCGCTCCTGTTGCCCGGCTTCC 47
                                   ***********************************************

consensus_1123#0      TTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATG 180
consensus_1123#1      TTTTACTGGGCCTGGCGTCCCCTGCGATCACTGATGGATCCCTGGAGAAGCTCACCAATG 107
                      ************************************************************

consensus_1123#0      GGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACG 240
consensus_1123#1      GGAATACAGACTTTGCAGCGAAGTTGTACCAAGCGGTCGCCAGCAGAACTGACGACAACG 167
                      ************************************************************

consensus_1123#0      TTTGCTTGTCTACTTTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTG 300
consensus_1123#1      TTTGCTTGTCTACATTTGCCTTATCCACTGCACTGTCTGCATTGCTGAGCGCCACCAGTG 227
                      ************* **********************************************

consensus_1123#0      GTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGC 360
consensus_1123#1      GTCCGACCCAAGAGCAACTGTTGCAGGGACTCGGTCTGACTGGACTGGATGCTCAGATGC 287
                      ************************************************************

consensus_1123#0      TGCCAG------------------------------------------------------ 366
consensus_1123#1      TGCCAGGTACAACAGGATTATGGAATGGACTATTTTCTGATCTTAAATTGTGATGTGGCG 347
                      ******                                                      

consensus_1123#0      --------------AGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAAC 412
consensus_1123#1      ATTTTTGCTTTCAGAGCTGTTCCAGAATCTGAGGACTGCCATTCAGCCGGGAAACATAAC 407
                                    **********************************************

consensus_1123#0      CAACCTGAAGCAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCT 472
consensus_1123#1      CAACCTGAAACAGGCCGTGGCTCTTCTCCCTTCCCACAACTTTGAAGTGTCAGCATCCCT 467
                      ********* **************************************************

consensus_1123#0      CCGCGAATTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCA 532
consensus_1123#1      CCGCGAGTTAGTTCAAACAAAATTTGGGGGATACATGCCAAGTCTGAAGTACACTGACCA 527
                      ****** *****************************************************

consensus_1123#0      AGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCAGACCGGAGACCAGATTCA 592
consensus_1123#1      AGCCGAAGCCATTAGTACCATCAACCGCTGGGCCCAGGATCA------------------ 569
                      ******************************************                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)