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Takifugu rubripes
cluster # 1152 cluster # 1152       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1152#0 length = 437 sequences # 1  
 consensus_1152#1 length = 319 sequences # 1  
consensusID : consensus_1152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence 
                              [GTTCGGGTTGCGAGCAAGAGGAGGCGGCCCGGCGAATGAGAGACCTGGAGGAAGCGCTGGGGAGGGCGGAGGAAGAGCGGCGGCGTGTGGTGGAGGAGAAGCAGAAGGAGGCGGCGATTGAGGAGCTGTACAAGGAGGCGCAAGAGGAGATCAAGATGCTTCAGGAGGCTCTGAGGGGGACGGTCCCCGTGGACGCAGCAGCAAGAGACTTCGAGGACATGTTTTCGGAGCTCGATGAGGTCATTTCCGGGCTGCAGCGCCGCCTGCTGGAACTGTCGCACTCCTACAGCGAGACCAAGAGTCAGCTCAGCGTGGCTCANAAGCAGCTGGTCGAGGCTCCGCCTCCCCCCTCGGAGGAGGAGCGGGTTCAGGAGCTGCAGGACGAGGCGGAGCANCTGAGGAGGCTGCTGGCAGAGGCAGAGAAGAAGAACGTGGAC]

[+] EMBL BU805453             [GTTCGGGTTGCGAGCAAGAGGAGGCGGCCCGGCGAATGAGAGACCTGGAGGAAGCGCTGGGGAGGGCGGAGGAAGAGCGGCGGCGTGTGGTGGAGGAGAAGCAGAAGGAGGCGGCGATTGAGGAGCTGTACAAGGAGGCGCAAGAGGAGATCAAGATGCTTCAGGAGGCTCTGAGGGGGACGGTCCCCGTGGACGCAGCAGCAAGAGACTTCGAGGACATGTTTTCGGAGCTCGATGAGGTCATTTCCGGGCTGCAGCGCCGCCTGCTGGAACTGTCGCACTCCTACAGCGAGACCAAGAGTCAGCTCAGCGTGGCTCANAAGCAGCTGGTCGAGGCTCCGCCTCCCCCCTCGGAGGAGGAGCGGGTTCAGGAGCTGCAGGACGAGGCGGAGCANCTGAGGAGGCTGCTGGCAGAGGCAGAGAAGAAGAACGTGGAC]




>consensus_1152#0
GTTCGGGTTGCGAGCAAGAGGAGGCGGCCCGGCGAATGAGAGACCTGGAGGAAGCGCTGG
GGAGGGCGGAGGAAGAGCGGCGGCGTGTGGTGGAGGAGAAGCAGAAGGAGGCGGCGATTG
AGGAGCTGTACAAGGAGGCGCAAGAGGAGATCAAGATGCTTCAGGAGGCTCTGAGGGGGA
CGGTCCCCGTGGACGCAGCAGCAAGAGACTTCGAGGACATGTTTTCGGAGCTCGATGAGG
TCATTTCCGGGCTGCAGCGCCGCCTGCTGGAACTGTCGCACTCCTACAGCGAGACCAAGA
GTCAGCTCAGCGTGGCTCANAAGCAGCTGGTCGAGGCTCCGCCTCCCCCCTCGGAGGAGG
AGCGGGTTCAGGAGCTGCAGGACGAGGCGGAGCANCTGAGGAGGCTGCTGGCAGAGGCAG
AGAAGAAGAACGTGGAC

consensusID : consensus_1152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence 
                              [AGAGTGTCCGGGAGAACGGCTTCCGCGCTGTTTCCTCCCTCCGCCCGGAGACGCGTGCGCTTCTCGGGGTCTTTTTCGTGTCCAGCGCCCGCCGCGGCCAGCACCAACCCGGGTTCGAGGGAGCGGAGGGCTGCATGGACCGGACCCCATCATGAAGAGCGGCGGCGTGTGGTGGAGGAGAAGCAGAAGGAGGCGGCGATTGAGGAGCTGTACAAGGAGGCGCAAGAGGAGATCAAGATGCTTCAGGAGGCTCTGAGGGGGACGGTCCCCGTGGACGCAGCAGCAAGAGACTTCGAGGACATGAAGGCGGAGCTGGATG]

[+] EMBL FR0064025            [AGAGTGTCCGGGAGAACGGCTTCCGCGCTGTTTCCTCCCTCCGCCCGGAGACGCGTGCGCTTCTCGGGGTCTTTTTCGTGTCCAGCGCCCGCCGCGGCCAGCACCAACCCGGGTTCGAGGGAGCGGAGGGCTGCATGGACCGGACCCCATCATGAAGAGCGGCGGCGTGTGGTGGAGGAGAAGCAGAAGGAGGCGGCGATTGAGGAGCTGTACAAGGAGGCGCAAGAGGAGATCAAGATGCTTCAGGAGGCTCTGAGGGGGACGGTCCCCGTGGACGCAGCAGCAAGAGACTTCGAGGACATGAAGGCGGAGCTGGATG]




>consensus_1152#1
AGAGTGTCCGGGAGAACGGCTTCCGCGCTGTTTCCTCCCTCCGCCCGGAGACGCGTGCGC
TTCTCGGGGTCTTTTTCGTGTCCAGCGCCCGCCGCGGCCAGCACCAACCCGGGTTCGAGG
GAGCGGAGGGCTGCATGGACCGGACCCCATCATGAAGAGCGGCGGCGTGTGGTGGAGGAG
AAGCAGAAGGAGGCGGCGATTGAGGAGCTGTACAAGGAGGCGCAAGAGGAGATCAAGATG
CTTCAGGAGGCTCTGAGGGGGACGGTCCCCGTGGACGCAGCAGCAAGAGACTTCGAGGAC
ATGAAGGCGGAGCTGGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1152#0      ------------------------------------------------------------
consensus_1152#1      AGAGTGTCCGGGAGAACGGCTTCCGCGCTGTTTCCTCCCTCCGCCCGGAGACGCGTGCGC 60
                                                                                  

consensus_1152#0      -------------------GTTCGGGTTGCGA-GCAAGAGGAGGCGGCCCGGCGAATGAG 40
consensus_1152#1      TTCTCGGGGTCTTTTTCGTGTCCAGCGCCCGCCGCGGCCAGCACCAACCCGG-GTTCGAG 119
                                         ** * *    **  **     *   *  ***** *   ***

consensus_1152#0      AGACCTGGAGGAAGCGCTGGGGAGGGCGGAG---GAAGAGCGGCGGCGTGTGGTGGAGGA 97
consensus_1152#1      GGAGCGGAGGGCTGCATGGACCGGACCCCATCATGAAGAGCGGCGGCGTGTGGTGGAGGA 179
                       ** * *  **  **   *    *  *  *    **************************

consensus_1152#0      GAAGCAGAAGGAGGCGGCGATTGAGGAGCTGTACAAGGAGGCGCAAGAGGAGATCAAGAT 157
consensus_1152#1      GAAGCAGAAGGAGGCGGCGATTGAGGAGCTGTACAAGGAGGCGCAAGAGGAGATCAAGAT 239
                      ************************************************************

consensus_1152#0      GCTTCAGGAGGCTCTGAGGGGGACGGTCCCCGTGGACGCAGCAGCAAGAGACTTCGAGGA 217
consensus_1152#1      GCTTCAGGAGGCTCTGAGGGGGACGGTCCCCGTGGACGCAGCAGCAAGAGACTTCGAGGA 299
                      ************************************************************

consensus_1152#0      CATGTTTTCGGAGCTCGATGAGGTCATTTCCGGGCTGCAGCGCCGCCTGCTGGAACTGTC 277
consensus_1152#1      CATGAAGGCGGAGCTGGATG---------------------------------------- 319
                      ****    ******* ****                                        

consensus_1152#0      GCACTCCTACAGCGAGACCAAGAGTCAGCTCAGCGTGGCTCANAAGCAGCTGGTCGAGGC 337
consensus_1152#1      ------------------------------------------------------------
                                                                                  

consensus_1152#0      TCCGCCTCCCCCCTCGGAGGAGGAGCGGGTTCAGGAGCTGCAGGACGAGGCGGAGCANCT 397
consensus_1152#1      ------------------------------------------------------------
                                                                                  

consensus_1152#0      GAGGAGGCTGCTGGCAGAGGCAGAGAAGAAGAACGTGGAC 437
consensus_1152#1      ----------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)