These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [GACGTCCGCTTGTCATCACCAGGGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACTTCTTCAATCCACCACGAACCACTAATATAGAGGAGGGGGGAGTACAAGTCCGTTTGCGTCCGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGAGGGAGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCACCTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAAGACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGATTTGGACCTCAGAATGACAGGATGAAGCAGGTGCAGTCGCAGGTGGATGAGGTCATCGACGTGATGCAGGAGAATATTTCCAAGGTGATAGAGAGAGGCGAGCGCCTCGATGACCTCCAGGATAAGTCGGAGAGCCTGTCGGACAACGCGTCGGCCTTCAGTAGCCGAGCCAAACAGCTGCACAGGAGGATGTGGTGGAGGGACATGAAGATGAAGCTGATTATCGCCCTGGTCGTGTTCGCCCTCCTGCTCATCATCATAATTCCCGTGATCCTCCGATAGCGCTAATG] [+] EMBL BU806249 [GACGTCCGCTTGTCATCACCAGGGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACTTCTTCAATCCACCACGAACCACTAATATAGAGGAGGGGGGAGTACAAGTCCGTTTGCGTCCGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGAGGGAGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCACCTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAAGACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGATTTGGACCTCAGAATGACAGGATGAAGCAGGTGCAGTCGCAGGTGGATGAGGTCATCGACGTGATGCAGGAGAATATTTCCAAGGTGATAGAGAGAGGCGAGCGCCTCGATGACCTCCAGGATAAGTCGGAGAGCCTGTCGGACAACGCGTCGGCCTTCAGTAGCCGAGCCAAACAGCTGCACAGGAGGATGTGGTGGAGGGACATGAAGATGAAGCTGATTATCGCCCTGGTCGTGTTCGCCCTCCTGCTCATCATCATAATTCCCGTGATCCTCCGATAGCGCTAATG] consensusID : consensus_1254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [GGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACTTCGTGAATCCACCACGAACCACTAATATAGAGGAGGNGGGAGTACAAGTCCGTTTGCGTCCGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGGCTTTTTATTCCCCTAACATATTGCCGAGAAACGGACGCTGCTGAGAAAGCCACATTGTCCGGCTGAACTGGATTCAATGAGGGGGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCACCTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAAGACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGAGTTGGACCTCAGAAT] [+] EMBL FR0060828 [GGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACTTCGTGAATCCACCACGAACCACTAATATAGAGGAGGNGGGAGTACAAGTCCGTTTGCGTCCGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGGCTTTTTATTCCCCTAACATATTGCCGAGAAACGGACGCTGCTGAGAAAGCCACATTGTCCGGCTGAACTGGATTCAATGAGGGGGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCACCTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAAGACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGAGTTGGACCTCAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1254#0 GACGTCCGCTTGTCATCACCAGGGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACT 60 consensus_1254#1 ----------------------GGCAGCACTGGAAACGAAATGAGATGAGAAACAGAACT 38 ************************************** consensus_1254#0 TCTTCAATCCACCACGAACCACTAATATAGAGGAGGGGGGAGTACAAGTCCGTTTGCGTC 120 consensus_1254#1 TCGTGAATCCACCACGAACCACTAATATAGAGGAGGNGGGAGTACAAGTCCGTTTGCGTC 98 ** * ******************************* *********************** consensus_1254#0 CGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGG-------------------- 160 consensus_1254#1 CGTCCCCCACCTCCGGCGAGCATCAAATCGAAGGAAACGGGCTTTTTATTCCCCTAACAT 158 **************************************** consensus_1254#0 ------------------------------------------------------------ consensus_1254#1 ATTGCCGAGAAACGGACGCTGCTGAGAAAGCCACATTGTCCGGCTGAACTGGATTCAATG 218 consensus_1254#0 AGGGAGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCAC 220 consensus_1254#1 AGGGGGCCAGATCACGAGGAGCAGCCTGACGACAACATGCCCCCCAAGTTTAAGCGGCAC 278 **** ******************************************************* consensus_1254#0 CTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAA 280 consensus_1254#1 CTCAATGATGACGAGGTCACGGGATCGATTCGGAGTGAGAGGAGGAACCTGCTGGAGGAA 338 ************************************************************ consensus_1254#0 GACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGATTTGGACCT 340 consensus_1254#1 GACTCAGATGAGGAAGAAGACTTCTTTCTGCGAGGACCCACGGGGCCCAGAGTTGGACCT 398 *************************************************** ******** consensus_1254#0 CAGAATGACAGGATGAAGCAGGTGCAGTCGCAGGTGGATGAGGTCATCGACGTGATGCAG 400 consensus_1254#1 CAGAAT------------------------------------------------------ 404 ****** consensus_1254#0 GAGAATATTTCCAAGGTGATAGAGAGAGGCGAGCGCCTCGATGACCTCCAGGATAAGTCG 460 consensus_1254#1 ------------------------------------------------------------ consensus_1254#0 GAGAGCCTGTCGGACAACGCGTCGGCCTTCAGTAGCCGAGCCAAACAGCTGCACAGGAGG 520 consensus_1254#1 ------------------------------------------------------------ consensus_1254#0 ATGTGGTGGAGGGACATGAAGATGAAGCTGATTATCGCCCTGGTCGTGTTCGCCCTCCTG 580 consensus_1254#1 ------------------------------------------------------------ consensus_1254#0 CTCATCATCATAATTCCCGTGATCCTCCGATAGCGCTAATG 621 consensus_1254#1 ----------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |