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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[CTAAGTTGCTTGAGTTGTGATTGAGAGTTTCTGGCCCGATTCTGCCTCCTACATGTCTAAGTGTCGTTGGGTGAGATTTTAAACCCCCTCCTGAAGCTGCCTCTCCAGCGTATAAAGGTTTCTTCTGCATTTATGGAGAAAGTTGTTGGCCCACACAGCTCCTCAAGTGTGAGGCGAACCAAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGACCATTCCACGAGATGTCAACACAGCTATAATGGAGCTGCTGATCATGGCCTACGCCCTCAAGACCTCCTGTGCTAAGAACATCATTGGAGTGATTCCTTACTTCCCCTACAGCAAACAGTGCAAGATGAGAAAAAGAGGCTCGATAGTGAGCAAGCTCTTAGCGTCCATGCTGGCGAAAGCAGGTTTGACACACATCATCACCATGGACTTGCACCAGAAGGAGATTCAGGGTTTCTTCACCTTCCCAGTGGACAACCTGCGCGCCTCTCCTTTCCTGATTCAGTACATCCAGGAAGAGATTCCTGATTACAGAAATGCAATAATTGTGGCAAAGTCTCCCTCCGCAGCTAAAAGGGCTCAGTCCTACGCTGAGC]
[+] EMBL BU807626 [CTAAGTTGCTTGAGTTGTGATTGAGAGTTTCTGGCCCGATTCTGCCTCCTACATGTCTAAGTGTCGTTGGGTGAGATTTTAAACCCCCTCCTGAAGCTGCCTCTCCAGCGTATAAAGGTTTCTTCTGCATTTATGGAGAAAGTTGTTGGCCCACACAGCTCCTCAAGTGTGAGGCGAACCAAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGACCATTCCACGAGATGTCAACACAGCTATAATGGAGCTGCTGATCATGGCCTACGCCCTCAAGACCTCCTGTGCTAAGAACATCATTGGAGTGATTCCTTACTTCCCCTACAGCAAACAGTGCAAGATGAGAAAAAGAGGCTCGATAGTGAGCAAGCTCTTAGCGTCCATGCTGGCGAAAGCAGGTTTGACACACATCATCACCATGGACTTGCACCAGAAGGAGATTCAGGGTTTCTTCACCTTCCCAGTGGACAACCTGCGCGCCTCTCCTTTCCTGATTCAGTACATCCAGGAAGAGATTCCTGATTACAGAAATGCAATAATTGTGGCAAAGTCTCCCTCCGCAGCTAAAAGGGCTCAGTCCTACGCTGAGC]
consensusID : consensus_1270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[ATTATTTTAGCGGTAGTTCTAGCGCTTTTTATTTGGCACAAACGGTTATTAATAAAGCATTAAAAACATTTCGTTCTTTTACGTCAAAGACAAAATTTTGTTGTTGCGAAAGGACGCTATCAGCTCAAGTCAGTGCCAGTTGCTAGCGCTAGCAAGATAGTCGGCTAGCTACAACGTCATAAGGAGTCGGAAACTAAATCATTTTTTGAATAAAAGGGATACTTCTGCCATTTCCAAGGACGATGAATGCCCCTAAAAGTGGTTATCGAGTCTTCTCCGCAAATTCATCTGTTGCGTGTACAGAATTGGCCAAGAAAATAACAGAACGGCTTGGAGTTGAACTTGGCAAATCTGTCGTTTTTCAGGAGTCCAACAGAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGACCATTCCACG]
[+] EMBL BU806373 [ATTATTTTAGCGGTAGTTCTAGCGCTTTTTATTTGGCACAAACGGTTATTAATAAAGCATTAAAAACATTTCGTTCTTTTACGTCAAAGACAAAATTTTGTTGTTGCGAAAGGACGCTATCAGCTCAAGTCAGTGCCAGTTGCTAGCGCTAGCAAGATAGTCGGCTAGCTACAACGTCATAAGGAGTCGGAAACTAAATCATTTTTTGAATAAAAGGGATACTTCTGCCATTTCCAAGGACGATGAATGCCCCTAAAAGTGGTTATCGAGTCTTCTCCGCAAATTCATCTGTTGCGTGTACAGAATTGGCCAAGAAAATAACAGAACGGCTTGGAGTTGAACTTGGCAAATCTGTCGTTTTTCAGGAGTCCAACAGAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGACCATTCCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1270#0 CTAAGTTGCTTGAGTTGTGATTGAGAGTTTCTGGCCCGATTCTGCCTCCTACATGTCTAA 60
consensus_1270#1 ----ATTATTTTAGCGGTAG--------TTCTAGCGCT-TTTTATTTGGCACA-----AA 42
** ** ** ** **** ** * ** * * *** **
consensus_1270#0 GTGTCGTTGGGTGAGATTTTAAACCCCCTCCTGAAGCTGCCTCTCCAGCGTATAAAGGTT 120
consensus_1270#1 CGGTTATTAATAAAGCATTAAAAACATTTCGTT------CTTTTACGTCAAAGACAAAAT 96
** ** ** ** *** * ** * * * * * * * * * *
consensus_1270#0 TCTTCTGCATTTATGGAGAAAGTTGTTGGCCCACACAGCTCCTCAAGTGTGAGGCGAACC 180
consensus_1270#1 TTTGTTG--TTGCGAAAGGACGCTATCAGCTCAAGTCAGTGC-CAGTTGCTAGCGCTAGC 153
* * ** ** ** * * * * ** ** * * ** ** ** * *
consensus_1270#0 AAGAAACCCGAGTGGATGTAAAAGAATCAGTTCGTGGACAGACTATCTTCATTATTCAGA 240
consensus_1270#1 AAGATAGTCGGCTAGCTACAACGTCATAAGGAGTCGG--AAACTAAAT-CATTTTTTGAA 210
**** * ** * * * ** ** ** ** * **** * **** ** *
consensus_1270#0 CCATTCCACGAGATGTCAACACAGCTATAATGGAGCTGCTGATCATGGCCTACGCCCTCA 300
consensus_1270#1 TAA----AAGGGAT------ACTTCTGCCAT-----TTCCAAGGACGATGAATGCCCCTA 255
* * * *** ** ** ** * * * * * * **** *
consensus_1270#0 AGACCTCCTGTGCTAAGAACATCATTGGAGTGATTCCTTACTTCCCCTACAGCAAACAGT 360
consensus_1270#1 AAA------GTGGTTATCGAGTCTTCTCCGCAAATTCATCTGTTGCGTGTACAGAATTGG 309
* * *** * * ** * * * * * * * * * * ** *
consensus_1270#0 GCAAGATGAGAAAAAGA-GGCTCGATAGTGAGCAAGCTCTTAGCGTCCATGCTGGCGAAA 419
consensus_1270#1 CCAAGAAAATAACAGAACGGCTTGGAGTTGAAC------TTGGCAAATCTGTCGTTTTTC 363
***** * ** * * **** * *** * ** ** ** *
consensus_1270#0 GCAGGTTTGACACACATCATCACCATGGACTTGCACCAGAAGGAGATTCAGGGTTTCTTC 479
consensus_1270#1 AGGAGTCCAACAGAGAA-ACCCGAGTGGA--TGTAAAAGAATCAG-TTCGTGGACAGACT 419
** *** * * * * **** ** * **** ** *** **
consensus_1270#0 ACCTTCCCAGTGGACAAC-CTGCGCGCCTCTCCTTTCCTGATTCAGTACATCCAGGAAGA 538
consensus_1270#1 ATCTTCATTATTCAGACCATTCCACG---------------------------------- 445
* **** * * * * * * **
consensus_1270#0 GATTCCTGATTACAGAAATGCAATAATTGTGGCAAAGTCTCCCTCCGCAGCTAAAAGGGC 598
consensus_1270#1 ------------------------------------------------------------
consensus_1270#0 TCAGTCCTACGCTGAGC 615
consensus_1270#1 -----------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |