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Takifugu rubripes
cluster # 1279 cluster # 1279       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1279#0 length = 620 sequences # 1  
 consensus_1279#1 length = 254 sequences # 1  
consensusID : consensus_1279#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence 
                              [GCTTTTTTTTATTTTTTATTTTTTTAGATTTTCAGCGTAGCTGCAGTTAAATGTTAAAAGCTAGGATGTCACGCAGATGGTTAATTTTTTTTTTATTGGGGATTCAAATGGACTGAGTCATGGGGGTGGAAATGGACTTAGTGGTTAGCGGAAGATCTCGGGAGCGGCACGAAAACGGACGGAAGCGGAGCGGGACCAGTGCGGAACCAGGCAGTTCAGGACCAGAGGGCGTGGGCGGACCATTGTTAGAACCAGGCAGGACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGTACCAGGCCATCTTCTCCCACGCCGCAGGCGACAACGGCACCCTGCTGAGCTTCTCCGAGGGAGACGTCATCACCCTGCTCGTGCCCGAAGCCCGCGACGGCTGGCACTACGGCGAGAACGAAAAGAACAAGATGCGCGGCTGGTTCCCCTTCTCCTACACGCGCGTCCTGCCCGAGAGCGACAGCGAGAAGCTCAAAGTGAACCTGCATCACGGGAAAAGCAGCAGCACGGGGAACCTGCTGGAGAACGACGGCTCGCTGCCCACGCCCGACTACGGCCTGACCGCCCGTCTGCTGGCCCAGAGTCTTGCACAGACCCGCCCACGT]

[+] EMBL BU806448             [GCTTTTTTTTATTTTTTATTTTTTTAGATTTTCAGCGTAGCTGCAGTTAAATGTTAAAAGCTAGGATGTCACGCAGATGGTTAATTTTTTTTTTATTGGGGATTCAAATGGACTGAGTCATGGGGGTGGAAATGGACTTAGTGGTTAGCGGAAGATCTCGGGAGCGGCACGAAAACGGACGGAAGCGGAGCGGGACCAGTGCGGAACCAGGCAGTTCAGGACCAGAGGGCGTGGGCGGACCATTGTTAGAACCAGGCAGGACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGTACCAGGCCATCTTCTCCCACGCCGCAGGCGACAACGGCACCCTGCTGAGCTTCTCCGAGGGAGACGTCATCACCCTGCTCGTGCCCGAAGCCCGCGACGGCTGGCACTACGGCGAGAACGAAAAGAACAAGATGCGCGGCTGGTTCCCCTTCTCCTACACGCGCGTCCTGCCCGAGAGCGACAGCGAGAAGCTCAAAGTGAACCTGCATCACGGGAAAAGCAGCAGCACGGGGAACCTGCTGGAGAACGACGGCTCGCTGCCCACGCCCGACTACGGCCTGACCGCCCGTCTGCTGGCCCAGAGTCTTGCACAGACCCGCCCACGT]




>consensus_1279#0
GCTTTTTTTTATTTTTTATTTTTTTAGATTTTCAGCGTAGCTGCAGTTAAATGTTAAAAG
CTAGGATGTCACGCAGATGGTTAATTTTTTTTTTATTGGGGATTCAAATGGACTGAGTCA
TGGGGGTGGAAATGGACTTAGTGGTTAGCGGAAGATCTCGGGAGCGGCACGAAAACGGAC
GGAAGCGGAGCGGGACCAGTGCGGAACCAGGCAGTTCAGGACCAGAGGGCGTGGGCGGAC
CATTGTTAGAACCAGGCAGGACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGTACCAGG
CCATCTTCTCCCACGCCGCAGGCGACAACGGCACCCTGCTGAGCTTCTCCGAGGGAGACG
TCATCACCCTGCTCGTGCCCGAAGCCCGCGACGGCTGGCACTACGGCGAGAACGAAAAGA
ACAAGATGCGCGGCTGGTTCCCCTTCTCCTACACGCGCGTCCTGCCCGAGAGCGACAGCG
AGAAGCTCAAAGTGAACCTGCATCACGGGAAAAGCAGCAGCACGGGGAACCTGCTGGAGA
ACGACGGCTCGCTGCCCACGCCCGACTACGGCCTGACCGCCCGTCTGCTGGCCCAGAGTC
TTGCACAGACCCGCCCACGT

consensusID : consensus_1279#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence 
                              [AATGGACTTATTGGTTAGCGGAAGATCTTGCGAGCGGCACGAAAACGGACGGAAGCGGAGCGGGACCAGTGCGGAACCAGGCAGTTCAGGACCAAAGGGTGTGGGCGGACCAGTGCAGAACCAGGCTGGACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGTACCTGGCATAACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGAAAAAAAAATGGATTTTTGATAGAAGCAAAGAGGTTGGTTCGACTTTA]

[+] EMBL FR0059103            [AATGGACTTATTGGTTAGCGGAAGATCTTGCGAGCGGCACGAAAACGGACGGAAGCGGAGCGGGACCAGTGCGGAACCAGGCAGTTCAGGACCAAAGGGTGTGGGCGGACCAGTGCAGAACCAGGCTGGACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGTACCTGGCATAACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGAAAAAAAAATGGATTTTTGATAGAAGCAAAGAGGTTGGTTCGACTTTA]




>consensus_1279#1
AATGGACTTATTGGTTAGCGGAAGATCTTGCGAGCGGCACGAAAACGGACGGAAGCGGAG
CGGGACCAGTGCGGAACCAGGCAGTTCAGGACCAAAGGGTGTGGGCGGACCAGTGCAGAA
CCAGGCTGGACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGTACCTGGCATAACAGGAC
CAGAGGGCGTGGGAGGACCAGTGCGGAAAAAAAAATGGATTTTTGATAGAAGCAAAGAGG
TTGGTTCGACTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1279#0      GCTTTTTTTTATTTTTTATTTTTTTAGATTTTCAGCGTAGCTGCAGTTAAATGTTAAAAG 60
consensus_1279#1      ------------------------------------------------------------
                                                                                  

consensus_1279#0      CTAGGATGTCACGCAGATGGTTAATTTTTTTTTTATTGGGGATTCAAATGGACTGAGTCA 120
consensus_1279#1      ------------------------------------------------------------
                                                                                  

consensus_1279#0      TGGGGGTGGAAATGGACTTAGTGGTTAGCGGAAGATCTCGGGAGCGGCACGAAAACGGAC 180
consensus_1279#1      ----------AATGGACTTATTGGTTAGCGGAAGATCTTGCGAGCGGCACGAAAACGGAC 50
                                ********** ***************** * *******************

consensus_1279#0      GGAAGCGGAGCGGGACCAGTGCGGAACCAGGCAGTTCAGGACCAGAGGGCGTGGGCGGAC 240
consensus_1279#1      GGAAGCGGAGCGGGACCAGTGCGGAACCAGGCAGTTCAGGACCAAAGGGTGTGGGCGGAC 110
                      ******************************************** **** **********

consensus_1279#0      CATTGTTAGAACCAGGCAGGACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGTACCAGG 300
consensus_1279#1      CAGTGC-AGAACCAGGCTGGACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGTACCTGG 169
                      ** **  ********** *************************************** **

consensus_1279#0      CC--ATCTTCTCCCACGCCGCAGGCG-ACAACGGCACCCTGCTGAGCTTCTCCGAGGGAG 357
consensus_1279#1      CATAACAGGACCAGAGGGCGTGGGAGGACCAGTGCGGAAAAAAAAATGGATTTTTGATAG 229
                      *   *      *  * * **  ** * ** *  **         *     *    *  **

consensus_1279#0      ACGTCATCACCCTGCTCGTGCCCGAAGCCCGCGACGGCTGGCACTACGGCGAGAACGAAA 417
consensus_1279#1      AAGCAAAGAGGTTGGTTCGACTTTA----------------------------------- 254
                      * *  *  *   ** *    *   *                                   

consensus_1279#0      AGAACAAGATGCGCGGCTGGTTCCCCTTCTCCTACACGCGCGTCCTGCCCGAGAGCGACA 477
consensus_1279#1      ------------------------------------------------------------
                                                                                  

consensus_1279#0      GCGAGAAGCTCAAAGTGAACCTGCATCACGGGAAAAGCAGCAGCACGGGGAACCTGCTGG 537
consensus_1279#1      ------------------------------------------------------------
                                                                                  

consensus_1279#0      AGAACGACGGCTCGCTGCCCACGCCCGACTACGGCCTGACCGCCCGTCTGCTGGCCCAGA 597
consensus_1279#1      ------------------------------------------------------------
                                                                                  

consensus_1279#0      GTCTTGCACAGACCCGCCCACGT 620
consensus_1279#1      -----------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)