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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence
[CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGACCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGACCCGGGTGGCTCCACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCTGAAGGACAGGGAACGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT]
[+] EMBL CA846268 [CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGACCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGACCCGGGTGGCTCCACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCTGAAGGACAGGGAACGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT]
consensusID : consensus_1298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAG]
[+] EMBL BU806730 [TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAGTCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTAGTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTTTCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGAGCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAAACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGTTAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCCGATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTGTCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCTGTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGATCACATCCAACAAGCCACCATCCATTGTTTGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1298#0 --------------------CTCGGTCTAGTTGACAAAACAAGTTTAAAGCTAACAATAG 40
consensus_1298#1 TGACGTCATTGGTAGTTCCACTTCGGCTAGTTGACAAAACAAGTTTAAAGCTAACAATAG 60
** * **********************************
consensus_1298#0 TCAGACCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTA 100
consensus_1298#1 TCAGAGCTCAAAGTTTAATATATATATTGTACGGTGGCCATATTGCACCTACAGTGTTTA 120
***** ******************************************************
consensus_1298#0 GTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTT 160
consensus_1298#1 GTAATGCCGAAGGGCAATTCTGACATGTGAAAGAATTCGACTTGTTTAATTGGACGCGTT 180
************************************************************
consensus_1298#0 TCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGA 220
consensus_1298#1 TCTTTTTTTAATGTTGGAGTTGCTTTCAGAGGTGGAACTTTAGCCTTCCTTACTTAGCGA 240
************************************************************
consensus_1298#0 GCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAA 280
consensus_1298#1 GCCGAGGGTGCACAGAGGATGCACGCACGGAACCCACTACAACAAAGAAAGAAGCACAAA 300
************************************************************
consensus_1298#0 ACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGT 340
consensus_1298#1 ACTGTTGGTGAAAAACAAGAAATAATGTGTGTTGGACCATGCATTAGTTCCGGGAATTGT 360
************************************************************
consensus_1298#0 TAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCC 400
consensus_1298#1 TAGGATGCTATGGACGAAGGGATCGCGGCGAATGGAAACGCCTCACGCTTCCCTTGGTCC 420
************************************************************
consensus_1298#0 GATGACACGACAGCTGAGG---------------------------AAAATGGTTGCGTG 433
consensus_1298#1 GATGACACGACAGCTGAGGTCTGGCACAGTACTCCAGTCAAAACCGAAAATGGTTGCGTG 480
******************* **************
consensus_1298#0 TCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCT 493
consensus_1298#1 TCAAGGGGCAAACCAAGGGTGGTGAAAAGCTTGAGCATGTCTTCACCCCCCATCCCAGCT 540
************************************************************
consensus_1298#0 GTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGAT 553
consensus_1298#1 GTGGACCTGGGTGCCTCCAGCATGCGGCCCCCTGAGGGGAGATCAGGTCTGGGCACCGAT 600
************************************************************
consensus_1298#0 CACATCCAACAAGCCACCATCCATTGTTTGCAGTTCCACGCGAACGACCCGGGTGGCTCC 613
consensus_1298#1 CACATCCAACAAGCCACCATCCATTGTTTGCAG--------------------------- 633
*********************************
consensus_1298#0 ACCATCCAGCGGCAGAGAAGAGAGCTCCAGCTGCTGATGGCTGAGCTGAAGGACAGGGAA 673
consensus_1298#1 ------------------------------------------------------------
consensus_1298#0 CGGGAGCTGAACGCCATGGCTGCCTCTCATCACAAGCAAAT 714
consensus_1298#1 -----------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |