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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[CAGTTGCAGGGGCAGGATTCTGGTTCGGAACAACTCCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCGACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGGACTTTAATCTGTTTGAGTAAGAGGCTTTAATGCATGCGATCTAGATGTCATAGTTCAGCCAATGCCTTCTAACATTAAGCCCTTGTAGGTGTCGGTGTCTGAAACCGTCAGCGTCTGATCACGTCTGATGTTTCACTTATTGCGCAATCGCCACTCGAAAAGTGTGTTTCATTCCCAGATTTCCGCGTTTGCTCCGACGGCAGCGACGGTTTCTAATCTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTCTTTTCCTTTTCTAATGAAAACCAGATGTTAACCACCATGTCCGTCTTGTATAGTCTGCAGCCACAGAAGGAGCCACATTATACACCATCATTCACCACCAACCGTGCAGAGACTAAAGGCGTGGGGCAATCATACATTAGATTTGAGCCATTCTGATCACATATCATGCACAGCCGGATCAATATTTATCTGCCACACTGTGACA]
[+] EMBL BU807156 [CAGTTGCAGGGGCAGGATTCTGGTTCGGAACAACTCCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCGACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGGACTTTAATCTGTTTGAGTAAGAGGCTTTAATGCATGCGATCTAGATGTCATAGTTCAGCCAATGCCTTCTAACATTAAGCCCTTGTAGGTGTCGGTGTCTGAAACCGTCAGCGTCTGATCACGTCTGATGTTTCACTTATTGCGCAATCGCCACTCGAAAAGTGTGTTTCATTCCCAGATTTCCGCGTTTGCTCCGACGGCAGCGACGGTTTCTAATCTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTCTTTTCCTTTTCTAATGAAAACCAGATGTTAACCACCATGTCCGTCTTGTATAGTCTGCAGCCACAGAAGGAGCCACATTATACACCATCATTCACCACCAACCGTGCAGAGACTAAAGGCGTGGGGCAATCATACATTAGATTTGAGCCATTCTGATCACATATCATGCACAGCCGGATCAATATTTATCTGCCACACTGTGACA]
consensusID : consensus_1332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[CCCTAAATCAGGTTACAGCAGCGCACAGTTGCAGGGGCAGGACTCTGGATCGGAACAACTCCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCGACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGGACTTTAATCTGTTTGAGTGGATATGATGCCCTCCAGACGGCTGTGATGCATGTTCATACTTTCCAGAAGCAATAAATCACCTCACCGCCATGAGTTCCCAGACAAGTTTTGGCAGCAACATGCTGTTCCAGTCCATTAACGATGACCTGAACGCATCACTGGTCACAGCAGATGAGTTATCGAAAGAGTTCAACTCCCTGCTGAAGGAGGTGTCCTCGGAAGAAAAGACTGGAACACAGACCAGCCCTCGAGTTTCCAGAGAGCAGCCTCGGTCCATCAGCC]
[+] EMBL CA588554 [CCCTAAATCAGGTTACAGCAGCGCACAGTTGCAGGGGCAGGACTCTGGATCGGAACAACTCCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCGACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGGACTTTAATCTGTTTGAGTGGATATGATGCCCTCCAGACGGCTGTGATGCATGTTCATACTTTCCAGAAGCAATAAATCACCTCACCGCCATGAGTTCCCAGACAAGTTTTGGCAGCAACATGCTGTTCCAGTCCATTAACGATGACCTGAACGCATCACTGGTCACAGCAGATGAGTTATCGAAAGAGTTCAACTCCCTGCTGAAGGAGGTGTCCTCGGAAGAAAAGACTGGAACACAGACCAGCCCTCGAGTTTCCAGAGAGCAGCCTCGGTCCATCAGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1332#0 -------------------------CAGTTGCAGGGGCAGGATTCTGGTTCGGAACAACT 35
consensus_1332#1 CCCTAAATCAGGTTACAGCAGCGCACAGTTGCAGGGGCAGGACTCTGGATCGGAACAACT 60
***************** ***** ***********
consensus_1332#0 CCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCG 95
consensus_1332#1 CCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCG 120
************************************************************
consensus_1332#0 ACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGG 155
consensus_1332#1 ACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGG 180
************************************************************
consensus_1332#0 ACTTTAATCTGTTTGAGTAAGAGGCTTTAATGCATGCGATCTAGATGTCATAGTTCAGCC 215
consensus_1332#1 ACTTTAATCTGTTTGAGT----GGATATGATGCCCTCCAGACGGCTGTGATGCAT--GTT 234
****************** ** * * **** * * * *** ** * *
consensus_1332#0 AATGCCTTCTAACATTAAGCCCTTGTAGGTGTCGGTGTCTGAAACCGTCAGCGTCTGATC 275
consensus_1332#1 CATACTTTCCAGAAGCAA-------TAAATCACCTCACC----GCCATGAGTTCCCAGAC 283
** * *** * * ** ** * * * ** * ** * *
consensus_1332#0 ACGTCTGATGTTTCACTTATTGCGCAATCGCCACTCGAAAAGTGTGTTTCATTCCCAGAT 335
consensus_1332#1 AAGTTTTGGCAGCAACATGCTGTT------CCAGTCCATTAACG------ATGACCTGAA 331
* ** * ** * ** *** ** * * * ** ** **
consensus_1332#0 TTCCGCGTTTGCTCCGACGGCAGCGACGGTTTCTAATCTTCCTTTTCCTTTTCCTTTTCC 395
consensus_1332#1 CGCATCACTGGTC---ACAGCAGATGAGTTATCGAA----------AGAGTTCAACTCCC 378
* * * * ** **** * * ** ** *** * **
consensus_1332#0 TTTTCCTTTCTTTTCCTTTTCTAATGAAAACCAGATGTTAACCACCATGTCCGTCTTGTA 455
consensus_1332#1 TGCTGAAGGAGGTGTCCTCGGAAGAAAAGACTGGAACACAG--ACCAGCCCTCGAGTTTC 436
* * * * * * ** ** ** * **** * * *
consensus_1332#0 TAGTCTGCAGCCACAGA--AGGAGCCACATTATACACCATCATTCACCACCAACCGTGCA 513
consensus_1332#1 CAGAGAGCAGCCTCGGTCCATCAGCC---------------------------------- 462
** ****** * * * ****
consensus_1332#0 GAGACTAAAGGCGTGGGGCAATCATACATTAGATTTGAGCCATTCTGATCACATATCATG 573
consensus_1332#1 ------------------------------------------------------------
consensus_1332#0 CACAGCCGGATCAATATTTATCTGCCACACTGTGACA 610
consensus_1332#1 -------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |