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Takifugu rubripes
cluster # 1338 cluster # 1338       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1338#0 length = 586 sequences # 1  
consensus_1338#1 length = 359 sequences # 1  

consensusID : consensus_1338#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [AAACGCGTCAGTCCGGGAGAGAAAGCGGGATTTGTGCCGGCTCGGTCCACCGAGGTGGTTCTGAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACACGGACACAGATAAAGTCCTGGGCGAGCTGGTCCGCATCGGAGCTGGGCAGGAGGCCAAGCAGGAACCCGTGACCACCGTGTCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCCCCCACCGTACAGCTGCCTTTGCCCTCATCTGCTGCAGGTGGAGAGGACAAACACGGGGAGGACGATGTTCTCAGACCCATCGTTCTTGATGGGAGCAACGTGGCCATGAGTCATGGGAACAAGGAAGTTTTCTCTTGTTTGGGAATCCAGCTAGCTGTGAACTTCTTCCTGGAGCGTGGCCACACTCACATTACTGTCTTTGTCCCATCGTGGCGGAAGGAGCAGCCCAGGCCAGACGTTCCTATCACA]

[+] EMBL BU807224             [AAACGCGTCAGTCCGGGAGAGAAAGCGGGATTTGTGCCGGCTCGGTCCACCGAGGTGGTTCTGAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACACGGACACAGATAAAGTCCTGGGCGAGCTGGTCCGCATCGGAGCTGGGCAGGAGGCCAAGCAGGAACCCGTGACCACCGTGTCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCCCCCACCGTACAGCTGCCTTTGCCCTCATCTGCTGCAGGTGGAGAGGACAAACACGGGGAGGACGATGTTCTCAGACCCATCGTTCTTGATGGGAGCAACGTGGCCATGAGTCATGGGAACAAGGAAGTTTTCTCTTGTTTGGGAATCCAGCTAGCTGTGAACTTCTTCCTGGAGCGTGGCCACACTCACATTACTGTCTTTGTCCCATCGTGGCGGAAGGAGCAGCCCAGGCCAGACGTTCCTATCACA]


>consensus_1338#0 AAACGCGTCAGTCCGGGAGAGAAAGCGGGATTTGTGCCGGCTCGGTCCACCGAGGTGGTT CTGAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCAGTAGGAGCATGGATCCCTCTGC AGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCCACAAGCTGGGCTACTCCACGGC TCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACACGGACACAGATAAAGTCCTGGG CGAGCTGGTCCGCATCGGAGCTGGGCAGGAGGCCAAGCAGGAACCCGTGACCACCGTGTC TGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCCCCCACCGTACAGCTGCCTTTGCC CTCATCTGCTGCAGGTGGAGAGGACAAACACGGGGAGGACGATGTTCTCAGACCCATCGT TCTTGATGGGAGCAACGTGGCCATGAGTCATGGGAACAAGGAAGTTTTCTCTTGTTTGGG AATCCAGCTAGCTGTGAACTTCTTCCTGGAGCGTGGCCACACTCACATTACTGTCTTTGT CCCATCGTGGCGGAAGGAGCAGCCCAGGCCAGACGTTCCTATCACA



consensusID : consensus_1338#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence
                              [GGGGGTCTGAGGTTGTTTACGTGAAAAGCAAAAGATGAGCACTGAAGTCAAATTTTGAGCCCATACGTCGCTGACACGTCTGCACAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACACGGACACAGATAAAGTCCTGGGCGAGCTGGGCCGCATCGGAGCTGGGCAGGAGGCCAAGCAGGAACCCGTGACCACCGTGGCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCC]

[+] EMBL FR0061297            [GGGGGTCTGAGGTTGTTTACGTGAAAAGCAAAAGATGAGCACTGAAGTCAAATTTTGAGCCCATACGTCGCTGACACGTCTGCACAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACACGGACACAGATAAAGTCCTGGGCGAGCTGGGCCGCATCGGAGCTGGGCAGGAGGCCAAGCAGGAACCCGTGACCACCGTGGCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCC]


>consensus_1338#1 GGGGGTCTGAGGTTGTTTACGTGAAAAGCAAAAGATGAGCACTGAAGTCAAATTTTGAGC CCATACGTCGCTGACACGTCTGCACAGATCTCCCAGCTCCACATTCCTCCTGCTCTACCA GTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTTCC ACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAACA CGGACACAGATAAAGTCCTGGGCGAGCTGGGCCGCATCGGAGCTGGGCAGGAGGCCAAGC AGGAACCCGTGACCACCGTGGCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1338#0      -----------------------AAACGCGTCAGTCCGGGAGAGAAAGCGGGATTTGTGC 37
consensus_1338#1      GGGGGTCTGAGGTTGTTTACGTGAAAAGCAAAAGATGAGCACTGAAGTCAAATTTTGAGC 60
                                             *** **   **    * *  ***  *    **** **

consensus_1338#0      CGGCTCGGTCCACCGAGGTGGTTCTG-AGATCTCCCAGCTCCACATTCCTCCTGCTCTAC 96
consensus_1338#1      CCATACG--TCGCTGACACGTCTGCACAGATCTCCCAGCTCCACATTCCTCCTGCTCTAC 118
                      *    **   * * **   *  *    *********************************

consensus_1338#0      CAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTT 156
consensus_1338#1      CAGTAGGAGCATGGATCCCTCTGCAGACCCCCAGCACCACCCGGCCCAGATGGACTTCTT 178
                      ************************************************************

consensus_1338#0      CCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAA 216
consensus_1338#1      CCACAAGCTGGGCTACTCCACGGCTCAGGTCCAGGCCATCCAGCAGCAGTTTGGCCCCAA 238
                      ************************************************************

consensus_1338#0      CACGGACACAGATAAAGTCCTGGGCGAGCTGGTCCGCATCGGAGCTGGGCAGGAGGCCAA 276
consensus_1338#1      CACGGACACAGATAAAGTCCTGGGCGAGCTGGGCCGCATCGGAGCTGGGCAGGAGGCCAA 298
                      ******************************** ***************************

consensus_1338#0      GCAGGAACCCGTGACCACCGTGTCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATC 336
consensus_1338#1      GCAGGAACCCGTGACCACCGTGGCTGTGCTGGTGCCCAGAGGGAACCACCAGAATTCATC 358
                      ********************** *************************************

consensus_1338#0      CCCCACCGTACAGCTGCCTTTGCCCTCATCTGCTGCAGGTGGAGAGGACAAACACGGGGA 396
consensus_1338#1      C----------------------------------------------------------- 359
                      *                                                           

consensus_1338#0      GGACGATGTTCTCAGACCCATCGTTCTTGATGGGAGCAACGTGGCCATGAGTCATGGGAA 456
consensus_1338#1      ------------------------------------------------------------
                                                                                  

consensus_1338#0      CAAGGAAGTTTTCTCTTGTTTGGGAATCCAGCTAGCTGTGAACTTCTTCCTGGAGCGTGG 516
consensus_1338#1      ------------------------------------------------------------
                                                                                  

consensus_1338#0      CCACACTCACATTACTGTCTTTGTCCCATCGTGGCGGAAGGAGCAGCCCAGGCCAGACGT 576
consensus_1338#1      ------------------------------------------------------------
                                                                                  

consensus_1338#0      TCCTATCACA 586
consensus_1338#1      ----------
                                




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)